Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024406 | XP_003630638.1 | 92.883 | 281 | 12 | 4 | 1 | 274 | 1 | 280 | 3.43e-166 | 471 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024406 | sp|Q7XC57|MYBS3_ORYSJ | 52.047 | 171 | 63 | 5 | 4 | 169 | 3 | 159 | 1.62e-46 | 161 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024406 | tr|G7LJK1|G7LJK1_MEDTR | 92.883 | 281 | 12 | 4 | 1 | 274 | 1 | 280 | 1.64e-166 | 471 |
Gene ID | Type | Classification |
---|---|---|
MsaG024406 | TF | MYB-related |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024406 | MtrunA17_Chr8g0389241 | 92.883 | 281 | 12 | 4 | 1 | 274 | 1 | 280 | 3.15e-170 | 471 |
MsaG024406 | MtrunA17_Chr6g0488471 | 52.145 | 303 | 102 | 13 | 1 | 274 | 1 | 289 | 7.09e-75 | 230 |
MsaG024406 | MtrunA17_Chr2g0331031 | 53.371 | 178 | 65 | 5 | 4 | 169 | 3 | 174 | 1.56e-46 | 159 |
MsaG024406 | MtrunA17_Chr4g0055931 | 47.283 | 184 | 67 | 6 | 4 | 176 | 3 | 167 | 1.03e-43 | 151 |
MsaG024406 | MtrunA17_Chr5g0415191 | 45.143 | 175 | 73 | 5 | 4 | 168 | 5 | 166 | 4.12e-38 | 136 |
MsaG024406 | MtrunA17_Chr4g0062741 | 67.089 | 79 | 25 | 1 | 99 | 176 | 132 | 210 | 3.79e-33 | 122 |
MsaG024406 | MtrunA17_Chr3g0135671 | 35.741 | 263 | 128 | 8 | 4 | 260 | 5 | 232 | 7.97e-32 | 117 |
MsaG024406 | MtrunA17_Chr1g0162081 | 65.823 | 79 | 26 | 1 | 99 | 176 | 116 | 194 | 8.00e-32 | 119 |
MsaG024406 | MtrunA17_Chr7g0241761 | 76.056 | 71 | 16 | 1 | 99 | 168 | 134 | 204 | 7.84e-31 | 117 |
MsaG024406 | MtrunA17_Chr3g0104071 | 71.233 | 73 | 20 | 1 | 97 | 168 | 139 | 211 | 2.23e-30 | 115 |
MsaG024406 | MtrunA17_Chr5g0429521 | 70.270 | 74 | 21 | 1 | 96 | 168 | 123 | 196 | 2.39e-30 | 115 |
MsaG024406 | MtrunA17_Chr1g0210471 | 62.791 | 86 | 31 | 1 | 84 | 168 | 103 | 188 | 8.90e-30 | 112 |
MsaG024406 | MtrunA17_Chr5g0436501 | 64.474 | 76 | 24 | 1 | 96 | 168 | 116 | 191 | 4.52e-27 | 105 |
MsaG024406 | MtrunA17_Chr4g0059701 | 79.245 | 53 | 11 | 0 | 99 | 151 | 78 | 130 | 7.43e-27 | 105 |
MsaG024406 | MtrunA17_Chr3g0092621 | 62.319 | 69 | 25 | 1 | 105 | 172 | 84 | 152 | 1.06e-25 | 99.8 |
MsaG024406 | MtrunA17_Chr6g0452791 | 75.000 | 48 | 12 | 0 | 105 | 152 | 80 | 127 | 2.00e-21 | 88.6 |
MsaG024406 | MtrunA17_Chr5g0409841 | 52.632 | 76 | 33 | 2 | 101 | 173 | 88 | 163 | 9.10e-19 | 82.8 |
MsaG024406 | MtrunA17_Chr5g0440731 | 49.383 | 81 | 37 | 2 | 97 | 173 | 97 | 177 | 9.30e-19 | 84.0 |
MsaG024406 | MtrunA17_Chr5g0440741 | 54.930 | 71 | 28 | 2 | 107 | 173 | 102 | 172 | 6.81e-18 | 81.6 |
MsaG024406 | MtrunA17_Chr5g0409831 | 57.143 | 56 | 24 | 0 | 101 | 156 | 73 | 128 | 3.93e-16 | 75.5 |
MsaG024406 | MtrunA17_Chr8g0365011 | 46.341 | 82 | 29 | 2 | 107 | 173 | 94 | 175 | 2.90e-14 | 71.2 |
MsaG024406 | MtrunA17_Chr8g0364731 | 56.452 | 62 | 24 | 1 | 115 | 173 | 11 | 72 | 1.11e-13 | 67.8 |
MsaG024406 | MtrunA17_Chr1g0192061 | 51.562 | 64 | 26 | 3 | 107 | 166 | 63 | 125 | 1.02e-12 | 65.1 |
MsaG024406 | MtrunA17_Chr5g0432921 | 63.830 | 47 | 16 | 1 | 107 | 153 | 115 | 160 | 9.74e-12 | 63.2 |
MsaG024406 | MtrunA17_Chr5g0432941 | 61.702 | 47 | 17 | 1 | 107 | 153 | 115 | 160 | 3.04e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024406 | AT5G56840.1 | 54.891 | 184 | 51 | 5 | 1 | 174 | 1 | 162 | 5.82e-53 | 172 |
MsaG024406 | AT5G61620.1 | 47.904 | 167 | 81 | 3 | 4 | 168 | 10 | 172 | 1.94e-44 | 153 |
MsaG024406 | AT5G47390.1 | 43.062 | 209 | 96 | 5 | 4 | 208 | 3 | 192 | 1.10e-43 | 152 |
MsaG024406 | AT1G70000.1 | 47.514 | 181 | 60 | 6 | 4 | 169 | 3 | 163 | 5.69e-40 | 140 |
MsaG024406 | AT1G70000.2 | 47.514 | 181 | 60 | 6 | 4 | 169 | 3 | 163 | 5.69e-40 | 140 |
MsaG024406 | AT3G16350.1 | 44.286 | 210 | 63 | 7 | 4 | 169 | 3 | 202 | 3.96e-36 | 133 |
MsaG024406 | AT1G49010.1 | 69.737 | 76 | 22 | 1 | 99 | 173 | 128 | 203 | 1.44e-32 | 122 |
MsaG024406 | AT5G08520.1 | 63.855 | 83 | 27 | 2 | 99 | 178 | 112 | 194 | 1.79e-31 | 118 |
MsaG024406 | AT5G01200.1 | 68.293 | 82 | 23 | 2 | 90 | 168 | 129 | 210 | 4.99e-31 | 116 |
MsaG024406 | AT2G38090.1 | 73.239 | 71 | 18 | 1 | 99 | 168 | 135 | 205 | 5.73e-30 | 114 |
MsaG024406 | AT5G58900.1 | 69.863 | 73 | 21 | 1 | 97 | 168 | 133 | 205 | 1.90e-29 | 113 |
MsaG024406 | AT3G11280.2 | 54.128 | 109 | 43 | 3 | 96 | 199 | 118 | 224 | 3.10e-28 | 109 |
MsaG024406 | AT3G11280.1 | 54.128 | 109 | 43 | 3 | 96 | 199 | 118 | 224 | 3.10e-28 | 109 |
MsaG024406 | AT5G04760.1 | 65.714 | 70 | 23 | 1 | 100 | 168 | 94 | 163 | 4.65e-27 | 105 |
MsaG024406 | AT5G05790.2 | 67.568 | 74 | 23 | 1 | 96 | 168 | 122 | 195 | 5.25e-27 | 106 |
MsaG024406 | AT5G05790.1 | 67.568 | 74 | 23 | 1 | 96 | 168 | 122 | 195 | 5.25e-27 | 106 |
MsaG024406 | AT1G19000.2 | 80.392 | 51 | 10 | 0 | 101 | 151 | 98 | 148 | 2.70e-25 | 102 |
MsaG024406 | AT1G19000.1 | 80.392 | 51 | 10 | 0 | 101 | 151 | 98 | 148 | 2.70e-25 | 102 |
MsaG024406 | AT1G74840.2 | 76.923 | 52 | 12 | 0 | 100 | 151 | 91 | 142 | 1.86e-24 | 98.6 |
MsaG024406 | AT1G74840.1 | 76.923 | 52 | 12 | 0 | 100 | 151 | 91 | 142 | 2.49e-24 | 99.0 |
MsaG024406 | AT3G10580.2 | 61.765 | 68 | 25 | 1 | 101 | 168 | 91 | 157 | 2.03e-21 | 90.9 |
MsaG024406 | AT3G10580.1 | 61.765 | 68 | 25 | 1 | 101 | 168 | 91 | 157 | 2.70e-21 | 91.3 |
MsaG024406 | AT5G23650.1 | 56.579 | 76 | 32 | 1 | 99 | 173 | 114 | 189 | 2.91e-21 | 92.0 |
MsaG024406 | AT4G09450.1 | 67.925 | 53 | 17 | 0 | 101 | 153 | 87 | 139 | 6.88e-18 | 80.1 |
MsaG024406 | AT3G10590.1 | 54.930 | 71 | 28 | 3 | 101 | 168 | 105 | 174 | 1.45e-14 | 71.2 |
Find 63 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTAATTAAGTGACGCTAAT+TGG | 0.117960 | 4:+99191584 | None:intergenic |
CCTGCTGGCTCATTCCTTCT+TGG | 0.142813 | 4:-99191608 | MsaT024406.1:CDS |
TGCTAATTCAGTAGTAAATT+TGG | 0.198359 | 4:-99191849 | MsaT024406.1:CDS |
TTGGAGGACTTCGTCTCTTC+GGG | 0.227891 | 4:-99193104 | MsaT024406.1:CDS |
TTGTGCAGCAGTGCCTAATT+TGG | 0.253498 | 4:-99191681 | MsaT024406.1:CDS |
ATAATTACTCTACAGATAAT+TGG | 0.274738 | 4:-99191721 | MsaT024406.1:CDS |
TATACCTTTCTTTCTCTCTT+GGG | 0.282804 | 4:+99192885 | None:intergenic |
ATATACCTTTCTTTCTCTCT+TGG | 0.345963 | 4:+99192884 | None:intergenic |
CTTGGAGGACTTCGTCTCTT+CGG | 0.346467 | 4:-99193105 | MsaT024406.1:CDS |
GAAAGTGTGAGGTCCAAATT+AGG | 0.360682 | 4:+99191668 | None:intergenic |
TTAATTAAGTGACGCTAATT+GGG | 0.384534 | 4:+99191585 | None:intergenic |
CTGTGCTCTTCTTCTGTCCA+TGG | 0.393875 | 4:+99192369 | None:intergenic |
GCTAATTCAGTAGTAAATTT+GGG | 0.397356 | 4:-99191848 | MsaT024406.1:CDS |
GAGCACAGAACATTCCTTGT+TGG | 0.426067 | 4:-99192354 | MsaT024406.1:CDS |
TGTTCGCATTGTGGTAAGAT+AGG | 0.440998 | 4:-99193162 | MsaT024406.1:CDS |
AATGAGGAAGATGGAGAGGA+TGG | 0.441387 | 4:+99193003 | None:intergenic |
CATGGCTAGCGACTTGTGTA+GGG | 0.443009 | 4:+99192268 | None:intergenic |
GCATGGCTAGCGACTTGTGT+AGG | 0.465972 | 4:+99192267 | None:intergenic |
ATACCTTTCTTTCTCTCTTG+GGG | 0.468820 | 4:+99192886 | None:intergenic |
CCAAGAAGGAATGAGCCAGC+AGG | 0.469903 | 4:+99191608 | None:intergenic |
ATGAGGAGGAAGATGATAGT+TGG | 0.475244 | 4:+99193079 | None:intergenic |
CAAAATCAACCCTCCCCTGC+TGG | 0.476253 | 4:-99191623 | MsaT024406.1:CDS |
GGATTAGAGAAGCTAGGAAA+AGG | 0.476740 | 4:-99192333 | MsaT024406.1:CDS |
TGCACATCCTTCACTACCCT+TGG | 0.478767 | 4:-99193123 | MsaT024406.1:CDS |
AGAAGCTAGGAAAAGGAGAC+TGG | 0.482282 | 4:-99192326 | MsaT024406.1:CDS |
CCTTTCTTTCTCTCTTGGGG+TGG | 0.484527 | 4:+99192889 | None:intergenic |
TGGAGAGGATGGTGAGGGAA+AGG | 0.486578 | 4:+99193014 | None:intergenic |
CAAGAAGGAATGAGCCAGCA+GGG | 0.487978 | 4:+99191609 | None:intergenic |
TGCTTCTTCTTGTTTAAAGT+AGG | 0.502048 | 4:+99191766 | None:intergenic |
GTAAGATAGGACATAATTGT+AGG | 0.502669 | 4:-99193149 | MsaT024406.1:CDS |
CCACCCCAAGAGAGAAAGAA+AGG | 0.504684 | 4:-99192889 | MsaT024406.1:intron |
AGAGAATGAGGAAGATGGAG+AGG | 0.510998 | 4:+99192999 | None:intergenic |
AAGGAATGAGCCAGCAGGGG+AGG | 0.519594 | 4:+99191613 | None:intergenic |
GATGAAGAGAATGAGGAAGA+TGG | 0.523435 | 4:+99192994 | None:intergenic |
AAATTTGGGTCATAAATTTG+AGG | 0.527043 | 4:-99191834 | MsaT024406.1:CDS |
CTTGTTGGATTAGAGAAGCT+AGG | 0.528666 | 4:-99192339 | MsaT024406.1:CDS |
TTGATTGATCAGGAGTTCCA+TGG | 0.532260 | 4:-99192386 | MsaT024406.1:intron |
ACATCCTTCACTACCCTTGG+AGG | 0.544075 | 4:-99193120 | MsaT024406.1:CDS |
TGACGCTAATTGGGCCAAGA+AGG | 0.545277 | 4:+99191594 | None:intergenic |
AGGAATGAGCCAGCAGGGGA+GGG | 0.549931 | 4:+99191614 | None:intergenic |
GGAAGATGGAGAGGATGGTG+AGG | 0.553718 | 4:+99193008 | None:intergenic |
AGATATGAAATATTAGAAGT+GGG | 0.561423 | 4:+99192931 | None:intergenic |
GATCAAGAAAAGCTTTAGCA+TGG | 0.562627 | 4:-99193040 | MsaT024406.1:CDS |
TAGATATGAAATATTAGAAG+TGG | 0.562815 | 4:+99192930 | None:intergenic |
GAAGATGGAGAGGATGGTGA+GGG | 0.564987 | 4:+99193009 | None:intergenic |
ACGTTCAAGTCTCTTTGACT+TGG | 0.572684 | 4:-99192202 | MsaT024406.1:intron |
CGAAGAGACGAAGTCCTCCA+AGG | 0.582973 | 4:+99193106 | None:intergenic |
AACACCAACACAAAAGAACA+AGG | 0.589703 | 4:-99191875 | MsaT024406.1:CDS |
TGATGTTGATGAAGAGAATG+AGG | 0.596418 | 4:+99192987 | None:intergenic |
CTAGCTTCTCTAATCCAACA+AGG | 0.600496 | 4:+99192340 | None:intergenic |
AGAAGAAAGTGTTCGCATTG+TGG | 0.603130 | 4:-99193171 | MsaT024406.1:CDS |
AAGTCCTCCAAGGGTAGTGA+AGG | 0.604978 | 4:+99193116 | None:intergenic |
TTGTTTAAAGTAGGACAAAG+TGG | 0.607562 | 4:+99191775 | None:intergenic |
TGTGAAGTTGAGATGAATGA+TGG | 0.607811 | 4:-99191800 | MsaT024406.1:CDS |
AAGAAGGAATGAGCCAGCAG+GGG | 0.613479 | 4:+99191610 | None:intergenic |
TGGAGGACTTCGTCTCTTCG+GGG | 0.623972 | 4:-99193103 | MsaT024406.1:CDS |
GGTACTAGATGATGATGAGG+AGG | 0.625545 | 4:+99193065 | None:intergenic |
CATGGTACTAGATGATGATG+AGG | 0.639951 | 4:+99193062 | None:intergenic |
GAAGAGACGAAGTCCTCCAA+GGG | 0.651358 | 4:+99193107 | None:intergenic |
ATGGCTAGCGACTTGTGTAG+GGG | 0.659705 | 4:+99192269 | None:intergenic |
CTAGGAAAAGGAGACTGGAG+AGG | 0.661686 | 4:-99192321 | MsaT024406.1:CDS |
GGGATGCAACTGAAAGTGTG+AGG | 0.693635 | 4:+99191657 | None:intergenic |
ACACCAACACAAAAGAACAA+GGG | 0.712802 | 4:-99191874 | MsaT024406.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 99191589 | 99193199 | 99191589 | ID=MsaG024406 |
Chr4 | mRNA | 99191589 | 99193199 | 99191589 | ID=MsaT024406.1;Parent=MsaG024406 |
Chr4 | exon | 99191589 | 99191909 | 99191589 | ID=MsaT024406.1.exon3;Parent=MsaT024406.1 |
Chr4 | CDS | 99191589 | 99191909 | 99191589 | ID=cds.MsaT024406.1;Parent=MsaT024406.1 |
Chr4 | exon | 99192203 | 99192396 | 99192203 | ID=MsaT024406.1.exon2;Parent=MsaT024406.1 |
Chr4 | CDS | 99192203 | 99192396 | 99192203 | ID=cds.MsaT024406.1;Parent=MsaT024406.1 |
Chr4 | exon | 99192890 | 99193199 | 99192890 | ID=MsaT024406.1.exon1;Parent=MsaT024406.1 |
Chr4 | CDS | 99192890 | 99193199 | 99192890 | ID=cds.MsaT024406.1;Parent=MsaT024406.1 |
Gene Sequence |
Protein sequence |