AlfalfaGEDB | MsaG024406

M. sativa ssp. caerulea / MsaG024406

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024406	XP_003630638.1	92.883	281	12	4	1	274	1	280	3.43e-166	471

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024406	sp\|Q7XC57\|MYBS3_ORYSJ	52.047	171	63	5	4	169	3	159	1.62e-46	161

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024406	tr\|G7LJK1\|G7LJK1_MEDTR	92.883	281	12	4	1	274	1	280	1.64e-166	471

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TFs/TRs:

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Gene ID	Type	Classification
MsaG024406	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024406	MtrunA17_Chr8g0389241	92.883	281	12	4	1	274	1	280	3.15e-170	471
MsaG024406	MtrunA17_Chr6g0488471	52.145	303	102	13	1	274	1	289	7.09e-75	230
MsaG024406	MtrunA17_Chr2g0331031	53.371	178	65	5	4	169	3	174	1.56e-46	159
MsaG024406	MtrunA17_Chr4g0055931	47.283	184	67	6	4	176	3	167	1.03e-43	151
MsaG024406	MtrunA17_Chr5g0415191	45.143	175	73	5	4	168	5	166	4.12e-38	136
MsaG024406	MtrunA17_Chr4g0062741	67.089	79	25	1	99	176	132	210	3.79e-33	122
MsaG024406	MtrunA17_Chr3g0135671	35.741	263	128	8	4	260	5	232	7.97e-32	117
MsaG024406	MtrunA17_Chr1g0162081	65.823	79	26	1	99	176	116	194	8.00e-32	119
MsaG024406	MtrunA17_Chr7g0241761	76.056	71	16	1	99	168	134	204	7.84e-31	117
MsaG024406	MtrunA17_Chr3g0104071	71.233	73	20	1	97	168	139	211	2.23e-30	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024406	AT5G56840.1	54.891	184	51	5	1	174	1	162	5.82e-53	172
MsaG024406	AT5G61620.1	47.904	167	81	3	4	168	10	172	1.94e-44	153
MsaG024406	AT5G47390.1	43.062	209	96	5	4	208	3	192	1.10e-43	152
MsaG024406	AT1G70000.1	47.514	181	60	6	4	169	3	163	5.69e-40	140
MsaG024406	AT1G70000.2	47.514	181	60	6	4	169	3	163	5.69e-40	140
MsaG024406	AT3G16350.1	44.286	210	63	7	4	169	3	202	3.96e-36	133
MsaG024406	AT1G49010.1	69.737	76	22	1	99	173	128	203	1.44e-32	122
MsaG024406	AT5G08520.1	63.855	83	27	2	99	178	112	194	1.79e-31	118
MsaG024406	AT5G01200.1	68.293	82	23	2	90	168	129	210	4.99e-31	116
MsaG024406	AT2G38090.1	73.239	71	18	1	99	168	135	205	5.73e-30	114

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Find 63 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTGGGTCATAAATTTG+AGG	0.527043	4:-99191834	MsaT024406.1:CDS
AACACCAACACAAAAGAACA+AGG	0.589703	4:-99191875	MsaT024406.1:CDS
AAGAAGGAATGAGCCAGCAG+GGG	0.613479	4:+99191610	None:intergenic
AAGGAATGAGCCAGCAGGGG+AGG	0.519594	4:+99191613	None:intergenic
AAGTCCTCCAAGGGTAGTGA+AGG	0.604978	4:+99193116	None:intergenic
AATGAGGAAGATGGAGAGGA+TGG	0.441387	4:+99193003	None:intergenic
ACACCAACACAAAAGAACAA+GGG	0.712802	4:-99191874	MsaT024406.1:CDS
ACATCCTTCACTACCCTTGG+AGG	0.544075	4:-99193120	MsaT024406.1:CDS
ACGTTCAAGTCTCTTTGACT+TGG	0.572684	4:-99192202	MsaT024406.1:intron
AGAAGAAAGTGTTCGCATTG+TGG	0.603130	4:-99193171	MsaT024406.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	99191589	99193199	99191589	ID=MsaG024406
Chr4	mRNA	99191589	99193199	99191589	ID=MsaT024406.1;Parent=MsaG024406
Chr4	exon	99191589	99191909	99191589	ID=MsaT024406.1.exon3;Parent=MsaT024406.1
Chr4	CDS	99191589	99191909	99191589	ID=cds.MsaT024406.1;Parent=MsaT024406.1
Chr4	exon	99192203	99192396	99192203	ID=MsaT024406.1.exon2;Parent=MsaT024406.1
Chr4	CDS	99192203	99192396	99192203	ID=cds.MsaT024406.1;Parent=MsaT024406.1
Chr4	exon	99192890	99193199	99192890	ID=MsaT024406.1.exon1;Parent=MsaT024406.1
Chr4	CDS	99192890	99193199	99192890	ID=cds.MsaT024406.1;Parent=MsaT024406.1

Gene Sequence

>MsaT024406.1

ATGGGGAGAAGAAAGTGTTCGCATTGTGGTAAGATAGGACATAATTGTAGGACATGCACATCCTTCACTACCCTTGGAGGACTTCGTCTCTTCGGGGTCCAACTATCATCTTCCTCCTCATCATCATCTAGTACCATGATCAAGAAAAGCTTTAGCATGGACACCTTTCCCTCACCATCCTCTCCATCTTCCTCATTCTCTTCATCAACATCATTAACCAATATTGATGAAAATTATTATCACAAACCCACTTCTAATATTTCATATCTATCAGATTGTTTTATAGGTCCACCCCAAGAGAGAAAGAAAGGAGTTCCATGGACAGAAGAAGAGCACAGAACATTCCTTGTTGGATTAGAGAAGCTAGGAAAAGGAGACTGGAGAGGCATCTCTAAAAACTTTGTCACTTCAAGAACCCCTACACAAGTCGCTAGCCATGCTCAAAAATACTTTCTTAGATTGGCTACTATCAACAAGAAGCGACGTTCAAGTCTCTTTGACTTGGTTGGGAGCAAGAACACCAACACAAAAGAACAAGGGTATGCTAATTCAGTAGTAAATTTGGGTCATAAATTTGAGGATAAGTGTAAATGTGAAGTTGAGATGAATGATGGCACCACTTTGTCCTACTTTAAACAAGAAGAAGCAGCCAAATCAGAAAAGCAAGAAAATAATTACTCTACAGATAATTGGCTACATGACTCTTCAAATTGTGCAGCAGTGCCTAATTTGGACCTCACACTTTCAGTTGCATCCCCTAAGCTTGAACAAAATCAACCCTCCCCTGCTGGCTCATTCCTTCTTGGCCCAATTAGCGTCACTTAA

Protein sequence

>MsaT024406.1

MGRRKCSHCGKIGHNCRTCTSFTTLGGLRLFGVQLSSSSSSSSSTMIKKSFSMDTFPSPSSPSSSFSSSTSLTNIDENYYHKPTSNISYLSDCFIGPPQERKKGVPWTEEEHRTFLVGLEKLGKGDWRGISKNFVTSRTPTQVASHAQKYFLRLATINKKRRSSLFDLVGSKNTNTKEQGYANSVVNLGHKFEDKCKCEVEMNDGTTLSYFKQEEAAKSEKQENNYSTDNWLHDSSNCAAVPNLDLTLSVASPKLEQNQPSPAGSFLLGPISVT*