Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024476 | XP_003630752.2 | 99.528 | 424 | 2 | 0 | 1 | 424 | 1 | 424 | 0.0 | 880 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024476 | sp|Q93Z18|CKL3_ARATH | 73.286 | 423 | 94 | 4 | 1 | 415 | 1 | 412 | 0.0 | 643 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024476 | tr|G7L860|G7L860_MEDTR | 99.528 | 424 | 2 | 0 | 1 | 424 | 1 | 424 | 0.0 | 880 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024476 | MtrunA17_Chr8g0390211 | 99.528 | 424 | 2 | 0 | 1 | 424 | 1 | 424 | 0.0 | 880 |
MsaG024476 | MtrunA17_Chr6g0486611 | 80.282 | 426 | 80 | 4 | 1 | 424 | 1 | 424 | 0.0 | 707 |
MsaG024476 | MtrunA17_Chr3g0140071 | 61.663 | 433 | 154 | 5 | 1 | 424 | 1 | 430 | 0.0 | 517 |
MsaG024476 | MtrunA17_Chr4g0071031 | 68.698 | 361 | 111 | 2 | 1 | 360 | 1 | 360 | 0.0 | 516 |
MsaG024476 | MtrunA17_Chr2g0329981 | 63.706 | 394 | 132 | 5 | 1 | 385 | 1 | 392 | 0.0 | 513 |
MsaG024476 | MtrunA17_Chr1g0166821 | 64.781 | 389 | 128 | 4 | 1 | 385 | 2 | 385 | 0.0 | 512 |
MsaG024476 | MtrunA17_Chr1g0183631 | 77.181 | 298 | 68 | 0 | 1 | 298 | 1 | 298 | 7.43e-178 | 504 |
MsaG024476 | MtrunA17_Chr1g0146151 | 58.605 | 430 | 161 | 5 | 1 | 422 | 1 | 421 | 2.23e-177 | 501 |
MsaG024476 | MtrunA17_Chr1g0187571 | 65.160 | 376 | 114 | 5 | 1 | 366 | 2 | 370 | 6.95e-176 | 499 |
MsaG024476 | MtrunA17_Chr8g0342821 | 76.589 | 299 | 69 | 1 | 1 | 299 | 1 | 298 | 2.62e-175 | 498 |
MsaG024476 | MtrunA17_Chr7g0261501 | 75.758 | 297 | 72 | 0 | 1 | 297 | 1 | 297 | 1.90e-174 | 496 |
MsaG024476 | MtrunA17_Chr2g0299661 | 57.303 | 445 | 155 | 6 | 1 | 423 | 1 | 432 | 2.03e-172 | 491 |
MsaG024476 | MtrunA17_Chr1g0167261 | 61.299 | 354 | 117 | 3 | 1 | 352 | 2 | 337 | 1.67e-156 | 446 |
MsaG024476 | MtrunA17_Chr7g0214531 | 36.735 | 294 | 166 | 7 | 2 | 278 | 27 | 317 | 3.45e-55 | 192 |
MsaG024476 | MtrunA17_Chr1g0213321 | 38.276 | 290 | 162 | 8 | 2 | 278 | 109 | 394 | 1.68e-54 | 192 |
MsaG024476 | MtrunA17_Chr3g0140431 | 37.634 | 279 | 161 | 6 | 5 | 273 | 32 | 307 | 6.04e-53 | 186 |
MsaG024476 | MtrunA17_Chr1g0146301 | 36.918 | 279 | 163 | 6 | 5 | 273 | 118 | 393 | 6.90e-53 | 187 |
MsaG024476 | MtrunA17_Chr7g0253211 | 37.543 | 293 | 162 | 8 | 2 | 277 | 314 | 602 | 2.40e-52 | 188 |
MsaG024476 | MtrunA17_Chr8g0340491 | 34.752 | 282 | 162 | 6 | 9 | 273 | 128 | 404 | 9.23e-48 | 173 |
MsaG024476 | MtrunA17_Chr7g0245031 | 35.385 | 130 | 70 | 4 | 107 | 236 | 250 | 365 | 8.58e-14 | 73.2 |
MsaG024476 | MtrunA17_Chr7g0272841 | 27.064 | 218 | 134 | 6 | 9 | 213 | 68 | 273 | 6.11e-13 | 70.9 |
MsaG024476 | MtrunA17_Chr5g0397101 | 28.372 | 215 | 138 | 5 | 5 | 213 | 63 | 267 | 3.02e-12 | 68.2 |
MsaG024476 | MtrunA17_Chr3g0093391 | 26.556 | 241 | 138 | 8 | 14 | 229 | 28 | 254 | 6.53e-12 | 67.4 |
MsaG024476 | MtrunA17_Chr2g0304111 | 27.632 | 228 | 130 | 9 | 3 | 214 | 17 | 225 | 8.62e-12 | 66.6 |
MsaG024476 | MtrunA17_Chr5g0428031 | 27.668 | 253 | 129 | 10 | 7 | 236 | 7 | 228 | 1.16e-11 | 66.2 |
MsaG024476 | MtrunA17_Chr4g0075541 | 28.824 | 170 | 104 | 4 | 100 | 269 | 185 | 337 | 1.52e-11 | 65.5 |
MsaG024476 | MtrunA17_Chr8g0387671 | 30.189 | 212 | 130 | 8 | 9 | 213 | 66 | 266 | 2.67e-11 | 65.5 |
MsaG024476 | MtrunA17_Chr3g0123491 | 24.895 | 237 | 136 | 8 | 9 | 214 | 93 | 318 | 4.27e-11 | 64.3 |
MsaG024476 | MtrunA17_Chr1g0197721 | 27.966 | 236 | 155 | 8 | 9 | 236 | 51 | 279 | 4.72e-11 | 64.7 |
MsaG024476 | MtrunA17_Chr1g0190131 | 25.000 | 244 | 157 | 8 | 1 | 236 | 1 | 226 | 7.14e-11 | 62.8 |
MsaG024476 | MtrunA17_Chr3g0107051 | 30.594 | 219 | 126 | 8 | 7 | 214 | 19 | 222 | 9.99e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG024476 | AT4G28880.3 | 73.286 | 423 | 94 | 4 | 1 | 415 | 1 | 412 | 0.0 | 643 |
MsaG024476 | AT4G28880.2 | 73.286 | 423 | 94 | 4 | 1 | 415 | 1 | 412 | 0.0 | 643 |
MsaG024476 | AT4G28880.1 | 73.286 | 423 | 94 | 4 | 1 | 415 | 1 | 412 | 0.0 | 643 |
MsaG024476 | AT4G28880.4 | 73.286 | 423 | 94 | 4 | 1 | 415 | 1 | 412 | 0.0 | 643 |
MsaG024476 | AT4G28860.1 | 72.471 | 425 | 93 | 7 | 1 | 415 | 1 | 411 | 0.0 | 624 |
MsaG024476 | AT4G28860.2 | 77.929 | 367 | 69 | 3 | 1 | 359 | 1 | 363 | 0.0 | 603 |
MsaG024476 | AT5G57015.1 | 73.270 | 318 | 79 | 1 | 1 | 312 | 1 | 318 | 1.42e-178 | 505 |
MsaG024476 | AT4G26100.1 | 70.326 | 337 | 94 | 3 | 1 | 333 | 1 | 335 | 5.17e-178 | 504 |
MsaG024476 | AT1G72710.1 | 69.591 | 342 | 102 | 2 | 1 | 341 | 1 | 341 | 9.83e-176 | 499 |
MsaG024476 | AT3G23340.1 | 58.491 | 424 | 158 | 5 | 1 | 420 | 1 | 410 | 7.99e-175 | 496 |
MsaG024476 | AT2G19470.1 | 59.653 | 404 | 131 | 4 | 1 | 389 | 1 | 387 | 1.96e-174 | 495 |
MsaG024476 | AT1G03930.1 | 73.737 | 297 | 78 | 0 | 1 | 297 | 1 | 297 | 5.58e-173 | 493 |
MsaG024476 | AT5G44100.1 | 74.074 | 297 | 77 | 0 | 1 | 297 | 1 | 297 | 1.57e-172 | 491 |
MsaG024476 | AT5G44100.2 | 74.074 | 297 | 77 | 0 | 1 | 297 | 1 | 297 | 1.57e-172 | 491 |
MsaG024476 | AT4G28540.1 | 74.161 | 298 | 77 | 0 | 1 | 298 | 5 | 302 | 2.60e-172 | 491 |
MsaG024476 | AT5G43320.1 | 56.849 | 438 | 168 | 6 | 1 | 419 | 1 | 436 | 5.59e-171 | 488 |
MsaG024476 | AT1G04440.1 | 64.345 | 359 | 114 | 4 | 1 | 346 | 1 | 358 | 8.58e-169 | 482 |
MsaG024476 | AT4G14340.1 | 57.044 | 433 | 164 | 7 | 1 | 423 | 7 | 427 | 2.62e-168 | 480 |
MsaG024476 | AT5G43320.2 | 74.411 | 297 | 76 | 0 | 1 | 297 | 1 | 297 | 3.27e-168 | 476 |
MsaG024476 | AT5G43320.3 | 74.411 | 297 | 76 | 0 | 1 | 297 | 1 | 297 | 3.27e-168 | 476 |
MsaG024476 | AT4G14340.2 | 68.111 | 323 | 97 | 2 | 1 | 318 | 7 | 328 | 1.25e-165 | 470 |
MsaG024476 | AT3G23340.2 | 55.896 | 424 | 155 | 6 | 1 | 420 | 1 | 396 | 3.66e-162 | 463 |
MsaG024476 | AT4G08800.1 | 62.585 | 294 | 78 | 2 | 1 | 294 | 1 | 262 | 7.94e-136 | 391 |
MsaG024476 | AT2G25760.2 | 38.112 | 286 | 160 | 5 | 5 | 273 | 101 | 386 | 9.61e-56 | 196 |
MsaG024476 | AT3G13670.1 | 36.735 | 294 | 166 | 7 | 2 | 278 | 127 | 417 | 4.33e-55 | 194 |
MsaG024476 | AT3G03940.1 | 38.225 | 293 | 160 | 8 | 2 | 277 | 130 | 418 | 2.83e-54 | 192 |
MsaG024476 | AT2G25760.1 | 37.762 | 286 | 158 | 6 | 5 | 273 | 101 | 383 | 1.49e-53 | 189 |
MsaG024476 | AT5G18190.2 | 37.288 | 295 | 164 | 8 | 2 | 279 | 120 | 410 | 1.02e-52 | 187 |
MsaG024476 | AT5G18190.1 | 37.288 | 295 | 164 | 8 | 2 | 279 | 120 | 410 | 1.02e-52 | 187 |
MsaG024476 | AT4G23650.1 | 30.374 | 214 | 133 | 6 | 8 | 215 | 77 | 280 | 1.18e-13 | 73.2 |
MsaG024476 | AT3G06030.1 | 27.189 | 217 | 135 | 7 | 9 | 213 | 68 | 273 | 3.85e-13 | 71.6 |
MsaG024476 | AT4G24400.1 | 27.381 | 252 | 131 | 9 | 7 | 236 | 7 | 228 | 1.62e-11 | 66.2 |
MsaG024476 | AT3G23000.1 | 28.182 | 220 | 137 | 8 | 3 | 213 | 19 | 226 | 1.77e-11 | 66.2 |
MsaG024476 | AT4G24400.2 | 27.381 | 252 | 131 | 9 | 7 | 236 | 7 | 228 | 2.02e-11 | 65.9 |
MsaG024476 | AT4G13020.2 | 28.261 | 184 | 118 | 4 | 5 | 180 | 8 | 185 | 4.08e-11 | 65.1 |
MsaG024476 | AT4G13020.3 | 28.261 | 184 | 118 | 4 | 5 | 180 | 8 | 185 | 4.09e-11 | 65.1 |
MsaG024476 | AT4G13020.4 | 28.723 | 188 | 115 | 5 | 1 | 180 | 1 | 177 | 4.48e-11 | 64.7 |
MsaG024476 | AT4G13020.1 | 28.723 | 188 | 115 | 5 | 1 | 180 | 1 | 177 | 4.64e-11 | 64.7 |
MsaG024476 | AT3G10540.1 | 27.542 | 236 | 156 | 8 | 9 | 236 | 45 | 273 | 4.68e-11 | 65.1 |
MsaG024476 | AT4G13020.6 | 28.723 | 188 | 115 | 5 | 1 | 180 | 1 | 177 | 4.85e-11 | 64.7 |
MsaG024476 | AT1G51660.1 | 26.772 | 254 | 155 | 9 | 12 | 255 | 82 | 314 | 5.07e-11 | 64.3 |
MsaG024476 | AT3G49370.1 | 29.412 | 221 | 132 | 9 | 7 | 215 | 140 | 348 | 5.19e-11 | 65.1 |
MsaG024476 | AT4G13020.7 | 28.723 | 188 | 115 | 5 | 1 | 180 | 1 | 177 | 5.72e-11 | 64.3 |
MsaG024476 | AT2G46700.1 | 25.571 | 219 | 141 | 6 | 6 | 213 | 140 | 347 | 6.83e-11 | 64.7 |
Find 105 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCAGACAAGGCAGGGTTTA+AGG | 0.145583 | 4:+99938874 | None:intergenic |
CTTGGTGCAGGTGGCATTCC+AGG | 0.196530 | 4:-99941756 | MsaT024476.1:intron |
CAGGTTTACATAATTGATTT+TGG | 0.206036 | 4:-99941167 | MsaT024476.1:CDS |
GCCTTCCTTGGCAAGGTCTA+AGG | 0.233807 | 4:-99940609 | MsaT024476.1:CDS |
TTTGATCAGCGGCCTGATTA+TGG | 0.242360 | 4:-99940363 | MsaT024476.1:CDS |
CATGGGCAAGCCAGTAAAAT+TGG | 0.281681 | 4:-99938833 | MsaT024476.1:CDS |
AGGGAGAACAAAAGCTTAAC+AGG | 0.296533 | 4:-99940959 | MsaT024476.1:CDS |
TCAGGAAATGCTACTGGTTC+TGG | 0.311321 | 4:-99939157 | MsaT024476.1:CDS |
GTGGCATTCCAGGCTTAAAA+TGG | 0.316285 | 4:-99941746 | MsaT024476.1:CDS |
TCTTTACCACAGCCAGTTCC+TGG | 0.326468 | 4:-99939542 | MsaT024476.1:intron |
GTACTTCTGTACTTCCTTAG+AGG | 0.327253 | 4:-99940774 | MsaT024476.1:CDS |
CTCCTGCTGGTACTTCAAAA+AGG | 0.340286 | 4:-99938901 | MsaT024476.1:CDS |
TAAAATGGTTTGGCATAGAT+AGG | 0.351034 | 4:-99941731 | MsaT024476.1:CDS |
GCAAAGTAGACGGGATGATT+TGG | 0.359030 | 4:-99940811 | MsaT024476.1:CDS |
TACCATGCTTGACATTCATT+TGG | 0.370830 | 4:+99938766 | None:intergenic |
GAATGCCATACCTTCCTCTA+AGG | 0.375079 | 4:+99940760 | None:intergenic |
GCAAGTTGCAATACTCATCT+TGG | 0.379672 | 4:-99940923 | MsaT024476.1:CDS |
TGATTGCTGATACTTTAAAA+TGG | 0.383962 | 4:+99939722 | None:intergenic |
GCAGACAAGGCAGGGTTTAA+GGG | 0.384050 | 4:+99938875 | None:intergenic |
CGGTTACTTGCACCAGGAAC+TGG | 0.392308 | 4:+99939530 | None:intergenic |
GTGCTTGCTATCGATTTACT+TGG | 0.395396 | 4:-99941699 | MsaT024476.1:CDS |
CGCTTCAAGAATCCATAATC+AGG | 0.403903 | 4:+99940351 | None:intergenic |
ATTCCAGGCTTAAAATGGTT+TGG | 0.408195 | 4:-99941741 | MsaT024476.1:CDS |
CCAATCGCCACATCCCTTAC+AGG | 0.412179 | 4:-99941115 | MsaT024476.1:intron |
AGGGATGTGGCGATTGGTTG+TGG | 0.418253 | 4:+99941121 | None:intergenic |
GATGACATCCAGCTACTTGA+AGG | 0.432963 | 4:+99938809 | None:intergenic |
TGGGCTAGCAAAACGGTATC+GGG | 0.438977 | 4:-99941147 | MsaT024476.1:CDS |
AAGTCCCATGAGGAAGTTAT+CGG | 0.450800 | 4:+99941435 | None:intergenic |
TGCAATACTCATCTTGGGAT+TGG | 0.451960 | 4:-99940917 | MsaT024476.1:intron |
CAAGTTGCAATACTCATCTT+GGG | 0.453718 | 4:-99940922 | MsaT024476.1:CDS |
AAGTATGAAGCAAACTCTAC+TGG | 0.459456 | 4:+99940408 | None:intergenic |
AAGCTCTACAATATTCTTCA+AGG | 0.460096 | 4:-99941870 | MsaT024476.1:CDS |
GAACCTTCCAACACTGGACA+TGG | 0.461334 | 4:-99938851 | MsaT024476.1:CDS |
AATCACCTTCACGAGCAAAT+AGG | 0.462598 | 4:+99940316 | None:intergenic |
CCTTCCTTGGCAAGGTCTAA+GGG | 0.464110 | 4:-99940608 | MsaT024476.1:CDS |
TTGGGCTAGCAAAACGGTAT+CGG | 0.464581 | 4:-99941148 | MsaT024476.1:CDS |
ATTGAATATGTGCATTCTAA+AGG | 0.468242 | 4:-99941481 | MsaT024476.1:CDS |
TTCATGCATATTCAGGGCAT+GGG | 0.474995 | 4:-99939195 | MsaT024476.1:intron |
TCTGCTTCTTATGCTCCTGC+TGG | 0.479546 | 4:-99938914 | MsaT024476.1:CDS |
ATCAAATATACTCACAGATA+AGG | 0.481086 | 4:+99939677 | None:intergenic |
TTGAAGAATATTGTAGAGCT+TGG | 0.482642 | 4:+99941872 | None:intergenic |
GTCAGAACTCAAGTTTCTAC+CGG | 0.488889 | 4:+99939108 | None:intergenic |
AAATTGGACCTTCAAGTAGC+TGG | 0.490531 | 4:-99938817 | MsaT024476.1:CDS |
GAAGGTTCAGCAGACAAGGC+AGG | 0.495629 | 4:+99938866 | None:intergenic |
TACAAGCTTGGCCGCAAGAT+CGG | 0.497439 | 4:-99942247 | MsaT024476.1:CDS |
TTGTTTAGCCTTCCTTGGCA+AGG | 0.498778 | 4:-99940616 | MsaT024476.1:intron |
TGCCCATGTCCAGTGTTGGA+AGG | 0.501193 | 4:+99938848 | None:intergenic |
CTTGGCCGCAAGATCGGAAG+TGG | 0.502438 | 4:-99942241 | MsaT024476.1:CDS |
TGCTTGCTATCGATTTACTT+GGG | 0.508590 | 4:-99941698 | MsaT024476.1:CDS |
ATGTCAATGAGTGGCAGTAA+TGG | 0.510047 | 4:+99940385 | None:intergenic |
GGGGAAGAGCGAATTAGATC+AGG | 0.520235 | 4:-99939175 | MsaT024476.1:CDS |
AACATGGAGCGCATCGTTGG+CGG | 0.520716 | 4:-99942274 | MsaT024476.1:CDS |
CCCTTAGACCTTGCCAAGGA+AGG | 0.522544 | 4:+99940608 | None:intergenic |
ATTCTAAAGGATATTTGCAT+AGG | 0.523357 | 4:-99941468 | MsaT024476.1:CDS |
CAAAACATGGAGCGCATCGT+TGG | 0.523862 | 4:-99942277 | None:intergenic |
GAACTCAAGTTTCTACCGGC+TGG | 0.525103 | 4:+99939112 | None:intergenic |
AAGATCGGAAGTGGATCCTT+CGG | 0.526716 | 4:-99942232 | MsaT024476.1:CDS |
ACTTGGTCGGAAGGCCAACC+AGG | 0.527701 | 4:-99941416 | MsaT024476.1:intron |
ATTAGATCAGGAAATGCTAC+TGG | 0.537963 | 4:-99939163 | MsaT024476.1:CDS |
GATAACTTCCTCATGGGACT+TGG | 0.538752 | 4:-99941433 | MsaT024476.1:CDS |
GTTGGCGGCAGCTACAAGCT+TGG | 0.539526 | 4:-99942259 | MsaT024476.1:CDS |
GTTGGAAGGTTCAGCAGACA+AGG | 0.540905 | 4:+99938862 | None:intergenic |
GGCTTGCCCATGTCCAGTGT+TGG | 0.544697 | 4:+99938844 | None:intergenic |
GCTTAAATACTGACCTCGAT+AGG | 0.544757 | 4:+99940532 | None:intergenic |
TTCTAAAGGATATTTGCATA+GGG | 0.547650 | 4:-99941467 | MsaT024476.1:CDS |
ATGGATGTTGACAATCATCA+AGG | 0.547757 | 4:-99939494 | MsaT024476.1:intron |
AAAATGGTTTGGCATAGATA+GGG | 0.551435 | 4:-99941730 | MsaT024476.1:CDS |
GTTAATGTTAGCTGATCAAA+TGG | 0.552458 | 4:-99941619 | MsaT024476.1:intron |
TCTGCTGAACCTTCCAACAC+TGG | 0.553667 | 4:-99938857 | MsaT024476.1:CDS |
CAGACAAGGCAGGGTTTAAG+GGG | 0.554251 | 4:+99938876 | None:intergenic |
AAGGTTCAGCAGACAAGGCA+GGG | 0.560637 | 4:+99938867 | None:intergenic |
CCTCATGGGACTTGGTCGGA+AGG | 0.562643 | 4:-99941425 | MsaT024476.1:CDS |
TTCTGTACTTCCTTAGAGGA+AGG | 0.567077 | 4:-99940770 | MsaT024476.1:intron |
AGTCCCATGAGGAAGTTATC+GGG | 0.570424 | 4:+99941436 | None:intergenic |
CGGGATGATTTGGAATCACT+AGG | 0.571323 | 4:-99940801 | MsaT024476.1:CDS |
TAAACCCGATAACTTCCTCA+TGG | 0.571460 | 4:-99941440 | MsaT024476.1:CDS |
AGAGACCTATTTGCTCGTGA+AGG | 0.573148 | 4:-99940321 | MsaT024476.1:intron |
AAATGGACCTGTAAGGGATG+TGG | 0.573331 | 4:+99941108 | None:intergenic |
TAACCGTCATGCAGTAGCAA+TGG | 0.576648 | 4:-99939513 | MsaT024476.1:CDS |
AAACCCGATAACTTCCTCAT+GGG | 0.582601 | 4:-99941439 | MsaT024476.1:CDS |
CCTGTAAGGGATGTGGCGAT+TGG | 0.583284 | 4:+99941115 | None:intergenic |
TTTGACGGCGACGATTTCGA+AGG | 0.585931 | 4:+99942087 | None:intergenic |
AACCTTCCAACACTGGACAT+GGG | 0.589719 | 4:-99938850 | MsaT024476.1:CDS |
AGGATCCACTTCCGATCTTG+CGG | 0.593120 | 4:+99942236 | None:intergenic |
ATGGTTTGGCATAGATAGGG+AGG | 0.602024 | 4:-99941727 | MsaT024476.1:CDS |
AGCAGGAGCATAAGAAGCAG+AGG | 0.604520 | 4:+99938916 | None:intergenic |
TAATAAGATAGTTACCTGGT+TGG | 0.604773 | 4:+99941402 | None:intergenic |
AATATACTCACAGATAAGGA+AGG | 0.613072 | 4:+99939681 | None:intergenic |
GCATGACGGTTACTTGCACC+AGG | 0.618520 | 4:+99939524 | None:intergenic |
TCCTTCGGTGAAATTTACCT+CGG | 0.620087 | 4:-99942217 | MsaT024476.1:intron |
GTTCAGTTCAAATCACCAGC+CGG | 0.624880 | 4:-99939127 | MsaT024476.1:CDS |
TCATGCATATTCAGGGCATG+GGG | 0.625170 | 4:-99939194 | MsaT024476.1:intron |
ACTCATTGACATTTGATCAG+CGG | 0.629606 | 4:-99940374 | MsaT024476.1:CDS |
ACCGAGGTAAATTTCACCGA+AGG | 0.633578 | 4:+99942216 | None:intergenic |
ACTTCCTCATGGGACTTGGT+CGG | 0.634675 | 4:-99941429 | MsaT024476.1:CDS |
TGTCTTACATTCTTGTCACG+AGG | 0.637274 | 4:+99939082 | None:intergenic |
GCATCCACAGTTGCTTTACG+AGG | 0.642435 | 4:-99941895 | MsaT024476.1:CDS |
GCAGCCCTTAGACCTTGCCA+AGG | 0.650628 | 4:+99940604 | None:intergenic |
CTCTACAATATTCTTCAAGG+AGG | 0.657190 | 4:-99941867 | MsaT024476.1:CDS |
GCTGATCAAATGTCAATGAG+TGG | 0.657329 | 4:+99940376 | None:intergenic |
CATCCATTGCTACTGCATGA+CGG | 0.662544 | 4:+99939510 | None:intergenic |
GAAGGTATCGACTCCTATCG+AGG | 0.668216 | 4:-99940545 | MsaT024476.1:intron |
GGGAGAACAAAAGCTTAACA+GGG | 0.678093 | 4:-99940958 | MsaT024476.1:CDS |
TTGGCCTCGTAAAGCAACTG+TGG | 0.692532 | 4:+99941891 | None:intergenic |
CCTTCCGACCAAGTCCCATG+AGG | 0.721487 | 4:+99941425 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 99938781 | 99942293 | 99938781 | ID=MsaG024476 |
Chr4 | mRNA | 99938781 | 99942293 | 99938781 | ID=MsaT024476.1;Parent=MsaG024476 |
Chr4 | exon | 99938781 | 99938960 | 99938781 | ID=MsaT024476.1.exon14;Parent=MsaT024476.1 |
Chr4 | CDS | 99938781 | 99938960 | 99938781 | ID=cds.MsaT024476.1;Parent=MsaT024476.1 |
Chr4 | exon | 99939090 | 99939202 | 99939090 | ID=MsaT024476.1.exon13;Parent=MsaT024476.1 |
Chr4 | CDS | 99939090 | 99939202 | 99939090 | ID=cds.MsaT024476.1;Parent=MsaT024476.1 |
Chr4 | exon | 99939495 | 99939552 | 99939495 | ID=MsaT024476.1.exon12;Parent=MsaT024476.1 |
Chr4 | CDS | 99939495 | 99939552 | 99939495 | ID=cds.MsaT024476.1;Parent=MsaT024476.1 |
Chr4 | exon | 99939692 | 99939774 | 99939692 | ID=MsaT024476.1.exon11;Parent=MsaT024476.1 |
Chr4 | CDS | 99939692 | 99939774 | 99939692 | ID=cds.MsaT024476.1;Parent=MsaT024476.1 |
Chr4 | exon | 99940322 | 99940448 | 99940322 | ID=MsaT024476.1.exon10;Parent=MsaT024476.1 |
Chr4 | CDS | 99940322 | 99940448 | 99940322 | ID=cds.MsaT024476.1;Parent=MsaT024476.1 |
Chr4 | exon | 99940546 | 99940630 | 99940546 | ID=MsaT024476.1.exon9;Parent=MsaT024476.1 |
Chr4 | CDS | 99940546 | 99940630 | 99940546 | ID=cds.MsaT024476.1;Parent=MsaT024476.1 |
Chr4 | exon | 99940771 | 99940834 | 99940771 | ID=MsaT024476.1.exon8;Parent=MsaT024476.1 |
Chr4 | CDS | 99940771 | 99940834 | 99940771 | ID=cds.MsaT024476.1;Parent=MsaT024476.1 |
Chr4 | exon | 99940918 | 99940979 | 99940918 | ID=MsaT024476.1.exon7;Parent=MsaT024476.1 |
Chr4 | CDS | 99940918 | 99940979 | 99940918 | ID=cds.MsaT024476.1;Parent=MsaT024476.1 |
Chr4 | exon | 99941116 | 99941186 | 99941116 | ID=MsaT024476.1.exon6;Parent=MsaT024476.1 |
Chr4 | CDS | 99941116 | 99941186 | 99941116 | ID=cds.MsaT024476.1;Parent=MsaT024476.1 |
Chr4 | exon | 99941417 | 99941512 | 99941417 | ID=MsaT024476.1.exon5;Parent=MsaT024476.1 |
Chr4 | CDS | 99941417 | 99941512 | 99941417 | ID=cds.MsaT024476.1;Parent=MsaT024476.1 |
Chr4 | exon | 99941620 | 99941768 | 99941620 | ID=MsaT024476.1.exon4;Parent=MsaT024476.1 |
Chr4 | CDS | 99941620 | 99941768 | 99941620 | ID=cds.MsaT024476.1;Parent=MsaT024476.1 |
Chr4 | exon | 99941865 | 99941934 | 99941865 | ID=MsaT024476.1.exon3;Parent=MsaT024476.1 |
Chr4 | CDS | 99941865 | 99941934 | 99941865 | ID=cds.MsaT024476.1;Parent=MsaT024476.1 |
Chr4 | exon | 99942084 | 99942124 | 99942084 | ID=MsaT024476.1.exon2;Parent=MsaT024476.1 |
Chr4 | CDS | 99942084 | 99942124 | 99942084 | ID=cds.MsaT024476.1;Parent=MsaT024476.1 |
Chr4 | exon | 99942218 | 99942293 | 99942218 | ID=MsaT024476.1.exon1;Parent=MsaT024476.1 |
Chr4 | CDS | 99942218 | 99942293 | 99942218 | ID=cds.MsaT024476.1;Parent=MsaT024476.1 |
Gene Sequence |
Protein sequence |