AlfalfaGEDB | MsaG024476

M. sativa ssp. caerulea / MsaG024476

KEGG: K00924 K08959 K08960
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008360 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009785 GO:0009791 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0030522 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051716 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0098657 GO:0104004 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024476	XP_003630752.2	99.528	424	2	0	1	424	1	424	0.0	880

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024476	sp\|Q93Z18\|CKL3_ARATH	73.286	423	94	4	1	415	1	412	0.0	643

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024476	tr\|G7L860\|G7L860_MEDTR	99.528	424	2	0	1	424	1	424	0.0	880

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024476	MtrunA17_Chr8g0390211	99.528	424	2	0	1	424	1	424	0.0	880
MsaG024476	MtrunA17_Chr6g0486611	80.282	426	80	4	1	424	1	424	0.0	707
MsaG024476	MtrunA17_Chr3g0140071	61.663	433	154	5	1	424	1	430	0.0	517
MsaG024476	MtrunA17_Chr4g0071031	68.698	361	111	2	1	360	1	360	0.0	516
MsaG024476	MtrunA17_Chr2g0329981	63.706	394	132	5	1	385	1	392	0.0	513
MsaG024476	MtrunA17_Chr1g0166821	64.781	389	128	4	1	385	2	385	0.0	512
MsaG024476	MtrunA17_Chr1g0183631	77.181	298	68	0	1	298	1	298	7.43e-178	504
MsaG024476	MtrunA17_Chr1g0146151	58.605	430	161	5	1	422	1	421	2.23e-177	501
MsaG024476	MtrunA17_Chr1g0187571	65.160	376	114	5	1	366	2	370	6.95e-176	499
MsaG024476	MtrunA17_Chr8g0342821	76.589	299	69	1	1	299	1	298	2.62e-175	498

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024476	AT4G28880.3	73.286	423	94	4	1	415	1	412	0.0	643
MsaG024476	AT4G28880.2	73.286	423	94	4	1	415	1	412	0.0	643
MsaG024476	AT4G28880.1	73.286	423	94	4	1	415	1	412	0.0	643
MsaG024476	AT4G28880.4	73.286	423	94	4	1	415	1	412	0.0	643
MsaG024476	AT4G28860.1	72.471	425	93	7	1	415	1	411	0.0	624
MsaG024476	AT4G28860.2	77.929	367	69	3	1	359	1	363	0.0	603
MsaG024476	AT5G57015.1	73.270	318	79	1	1	312	1	318	1.42e-178	505
MsaG024476	AT4G26100.1	70.326	337	94	3	1	333	1	335	5.17e-178	504
MsaG024476	AT1G72710.1	69.591	342	102	2	1	341	1	341	9.83e-176	499
MsaG024476	AT3G23340.1	58.491	424	158	5	1	420	1	410	7.99e-175	496

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Find 105 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTTTGGCATAGATA+GGG	0.551435	4:-99941730	MsaT024476.1:CDS
AAACCCGATAACTTCCTCAT+GGG	0.582601	4:-99941439	MsaT024476.1:CDS
AAATGGACCTGTAAGGGATG+TGG	0.573331	4:+99941108	None:intergenic
AAATTGGACCTTCAAGTAGC+TGG	0.490531	4:-99938817	MsaT024476.1:CDS
AACATGGAGCGCATCGTTGG+CGG	0.520716	4:-99942274	MsaT024476.1:CDS
AACCTTCCAACACTGGACAT+GGG	0.589719	4:-99938850	MsaT024476.1:CDS
AAGATCGGAAGTGGATCCTT+CGG	0.526716	4:-99942232	MsaT024476.1:CDS
AAGCTCTACAATATTCTTCA+AGG	0.460096	4:-99941870	MsaT024476.1:CDS
AAGGTTCAGCAGACAAGGCA+GGG	0.560637	4:+99938867	None:intergenic
AAGTATGAAGCAAACTCTAC+TGG	0.459456	4:+99940408	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	99938781	99942293	99938781	ID=MsaG024476
Chr4	mRNA	99938781	99942293	99938781	ID=MsaT024476.1;Parent=MsaG024476
Chr4	exon	99938781	99938960	99938781	ID=MsaT024476.1.exon14;Parent=MsaT024476.1
Chr4	CDS	99938781	99938960	99938781	ID=cds.MsaT024476.1;Parent=MsaT024476.1
Chr4	exon	99939090	99939202	99939090	ID=MsaT024476.1.exon13;Parent=MsaT024476.1
Chr4	CDS	99939090	99939202	99939090	ID=cds.MsaT024476.1;Parent=MsaT024476.1
Chr4	exon	99939495	99939552	99939495	ID=MsaT024476.1.exon12;Parent=MsaT024476.1
Chr4	CDS	99939495	99939552	99939495	ID=cds.MsaT024476.1;Parent=MsaT024476.1
Chr4	exon	99939692	99939774	99939692	ID=MsaT024476.1.exon11;Parent=MsaT024476.1
Chr4	CDS	99939692	99939774	99939692	ID=cds.MsaT024476.1;Parent=MsaT024476.1
Chr4	exon	99940322	99940448	99940322	ID=MsaT024476.1.exon10;Parent=MsaT024476.1
Chr4	CDS	99940322	99940448	99940322	ID=cds.MsaT024476.1;Parent=MsaT024476.1
Chr4	exon	99940546	99940630	99940546	ID=MsaT024476.1.exon9;Parent=MsaT024476.1
Chr4	CDS	99940546	99940630	99940546	ID=cds.MsaT024476.1;Parent=MsaT024476.1
Chr4	exon	99940771	99940834	99940771	ID=MsaT024476.1.exon8;Parent=MsaT024476.1
Chr4	CDS	99940771	99940834	99940771	ID=cds.MsaT024476.1;Parent=MsaT024476.1
Chr4	exon	99940918	99940979	99940918	ID=MsaT024476.1.exon7;Parent=MsaT024476.1
Chr4	CDS	99940918	99940979	99940918	ID=cds.MsaT024476.1;Parent=MsaT024476.1
Chr4	exon	99941116	99941186	99941116	ID=MsaT024476.1.exon6;Parent=MsaT024476.1
Chr4	CDS	99941116	99941186	99941116	ID=cds.MsaT024476.1;Parent=MsaT024476.1
Chr4	exon	99941417	99941512	99941417	ID=MsaT024476.1.exon5;Parent=MsaT024476.1
Chr4	CDS	99941417	99941512	99941417	ID=cds.MsaT024476.1;Parent=MsaT024476.1
Chr4	exon	99941620	99941768	99941620	ID=MsaT024476.1.exon4;Parent=MsaT024476.1
Chr4	CDS	99941620	99941768	99941620	ID=cds.MsaT024476.1;Parent=MsaT024476.1
Chr4	exon	99941865	99941934	99941865	ID=MsaT024476.1.exon3;Parent=MsaT024476.1
Chr4	CDS	99941865	99941934	99941865	ID=cds.MsaT024476.1;Parent=MsaT024476.1
Chr4	exon	99942084	99942124	99942084	ID=MsaT024476.1.exon2;Parent=MsaT024476.1
Chr4	CDS	99942084	99942124	99942084	ID=cds.MsaT024476.1;Parent=MsaT024476.1
Chr4	exon	99942218	99942293	99942218	ID=MsaT024476.1.exon1;Parent=MsaT024476.1
Chr4	CDS	99942218	99942293	99942218	ID=cds.MsaT024476.1;Parent=MsaT024476.1

Gene Sequence

>MsaT024476.1

ATGGAGCGCATCGTTGGCGGCAGCTACAAGCTTGGCCGCAAGATCGGAAGTGGATCCTTCGGTGAAATTTACCTCGCTACGCATATTGATACCTTCGAAATCGTCGCCGTCAAAATCGAGAATAGTAAAACAAAGCATCCACAGTTGCTTTACGAGGCCAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATTCCAGGCTTAAAATGGTTTGGCATAGATAGGGAGGATAACGTGCTTGCTATCGATTTACTTGGGCCTAGTCTTGAAGATCTTTTTGTTTATTGTGGAAGGAAGTTTTCGTTGAAGACTGTGTTAATGTTAGCTGATCAAATGATCACTAGAATTGAATATGTGCATTCTAAAGGATATTTGCATAGGGATATTAAACCCGATAACTTCCTCATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTAGCAAAACGGTATCGGGAATCCACAACCAATCGCCACATCCCTTACAGGGAGAACAAAAGCTTAACAGGGACTGCTCGATATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTAGACGGGATGATTTGGAATCACTAGGATATGTACTTCTGTACTTCCTTAGAGGAAGCCTTCCTTGGCAAGGTCTAAGGGCTGCAACAAAGAAACAGAAGTATGAAAAAATATGTCAGAAGAAGGTATCGACTCCTATCGAGGTACTATGCAAATCTCATCCAGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCATTGACATTTGATCAGCGGCCTGATTATGGATTCTTGAAGCGCTTATTTAGAGACCTATTTGCTCGTGAAGGCTATGAATTTGATTTCGTTTTTGATTGGACCATTTTAAAGTATCAGCAATCACAGAAGAATTTAGTTCAGCCTTCCTTATCTCCAGTTCCTGGTGCAAGTAACCGTCATGCAGTAGCAATGGATGTTGACAATCATCAAGGGCATGGGGAAGAGCGAATTAGATCAGGAAATGCTACTGGTTCTGGTGTTAAAGTTCAGTTCAAATCACCAGCCGGTAGAAACTTGAGTTCTGACAATCCTCGTGACAAGAATATTTTTGGAGAAGCAAATATGGCCTCTGCTTCTTATGCTCCTGCTGGTACTTCAAAAAGGAACCCCTTAAACCCTGCCTTGTCTGCTGAACCTTCCAACACTGGACATGGGCAAGCCAGTAAAATTGGACCTTCAAGTAGCTGGATGTCATCTCTGCAGCGCATATCTTCTTCCAAATGA

Protein sequence

>MsaT024476.1

MERIVGGSYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPGLKWFGIDREDNVLAIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRESTTNRHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLRAATKKQKYEKICQKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDFVFDWTILKYQQSQKNLVQPSLSPVPGASNRHAVAMDVDNHQGHGEERIRSGNATGSGVKVQFKSPAGRNLSSDNPRDKNIFGEANMASASYAPAGTSKRNPLNPALSAEPSNTGHGQASKIGPSSSWMSSLQRISSSK*