AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG024630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG024630 MtrunA17_Chr8g0392301 98.704 1003 13 0 1 1003 1 1003 0.0 2064
MsaG024630 MtrunA17_Chr5g0447641 53.571 980 399 14 41 994 263 1212 0.0 995
MsaG024630 MtrunA17_Chr8g0377481 52.261 995 398 17 29 994 21 967 0.0 988
MsaG024630 MtrunA17_Chr3g0122391 51.908 996 413 16 25 996 73 1026 0.0 979
MsaG024630 MtrunA17_Chr2g0311191 74.444 180 7 1 320 499 94 234 1.03e-80 262
MsaG024630 MtrunA17_Chr2g0311191 80.882 68 13 0 184 251 21 88 5.38e-30 119
MsaG024630 MtrunA17_Chr3g0136601 36.364 297 170 8 386 680 373 652 5.30e-41 163
MsaG024630 MtrunA17_Chr3g0136601 31.677 161 97 3 847 995 790 949 8.95e-18 89.0
MsaG024630 MtrunA17_Chr1g0150511 34.494 316 179 8 386 680 379 687 5.34e-41 164
MsaG024630 MtrunA17_Chr1g0150511 33.566 143 83 3 863 994 870 1011 1.29e-15 82.0
MsaG024630 MtrunA17_Chr5g0405701 33.036 336 191 7 336 670 462 764 2.22e-40 162
MsaG024630 MtrunA17_Chr5g0405701 31.138 167 74 4 858 998 1047 1198 3.57e-15 80.9
MsaG024630 MtrunA17_Chr8g0371601 34.416 308 152 5 372 670 460 726 6.30e-40 160
MsaG024630 MtrunA17_Chr8g0371601 32.353 170 73 4 841 982 999 1154 8.17e-17 85.9
MsaG024630 MtrunA17_Chr4g0013831 29.888 358 187 9 377 727 338 638 3.91e-30 128
MsaG024630 MtrunA17_Chr7g0269631 31.148 305 155 4 377 680 338 588 6.66e-28 120
MsaG024630 MtrunA17_Chr1g0197591 27.446 368 220 13 335 688 328 662 5.57e-24 109
MsaG024630 MtrunA17_Chr1g0197591 38.571 140 62 5 858 990 923 1045 3.21e-16 84.0
MsaG024630 MtrunA17_Chr1g0194741 27.628 333 191 10 340 655 352 651 3.26e-22 102
MsaG024630 MtrunA17_Chr1g0190021 25.481 208 152 1 362 569 350 554 3.29e-17 87.0
MsaG024630 MtrunA17_Chr1g0194731 33.117 154 78 5 846 991 313 449 4.14e-15 79.3
MsaG024630 MtrunA17_Chr7g0274831 21.038 366 232 3 370 735 362 670 1.22e-14 78.6
MsaG024630 MtrunA17_Chr7g0274831 33.871 124 62 3 860 980 638 744 1.05e-11 69.3
MsaG024630 MtrunA17_Chr8g0343551 42.353 85 32 3 906 990 15 82 3.55e-13 66.2
MsaG024630 MtrunA17_Chr8g0364781 44.776 67 37 0 864 930 15 81 4.45e-13 67.8
MsaG024630 MtrunA17_Chr1g0186431 29.530 149 105 0 362 510 344 492 8.96e-12 69.3
MsaG024630 MtrunA17_Chr1g0186431 31.387 137 74 3 856 991 630 747 1.72e-11 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG024630 AT2G01830.2 71.183 989 255 12 25 1003 112 1080 0.0 1402
MsaG024630 AT2G01830.1 71.183 989 255 12 25 1003 89 1057 0.0 1402
MsaG024630 AT2G01830.4 71.183 989 255 12 25 1003 89 1057 0.0 1402
MsaG024630 AT2G01830.6 71.183 989 255 12 25 1003 89 1057 0.0 1402
MsaG024630 AT2G01830.3 71.183 989 255 12 25 1003 89 1057 0.0 1402
MsaG024630 AT2G01830.5 71.183 989 255 12 25 1003 101 1069 0.0 1402
MsaG024630 AT5G35750.1 54.328 1005 393 16 16 995 211 1174 0.0 1020
MsaG024630 AT1G27320.1 54.088 954 369 15 68 996 121 1030 0.0 981
MsaG024630 AT2G17820.1 33.333 345 178 7 336 670 451 753 4.40e-42 168
MsaG024630 AT5G10720.1 35.254 295 142 6 386 680 369 614 8.92e-41 163
MsaG024630 AT5G10720.1 34.028 144 83 2 862 994 779 921 3.27e-16 84.3
MsaG024630 AT1G66340.1 28.112 466 255 11 377 835 337 729 3.63e-35 144
MsaG024630 AT2G47430.1 30.723 332 183 11 372 690 384 681 1.42e-30 130
MsaG024630 AT2G47430.1 37.063 143 59 5 857 983 982 1109 1.38e-16 85.9
MsaG024630 AT2G40940.1 30.952 336 167 7 356 680 306 587 1.42e-27 119
MsaG024630 AT3G04580.2 32.026 153 82 5 846 996 631 763 2.61e-13 74.7
MsaG024630 AT3G04580.1 32.026 153 82 5 846 996 631 763 2.61e-13 74.7
MsaG024630 AT4G18130.1 31.034 145 98 2 388 531 875 1018 2.43e-11 68.6

Find 231 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTCTTCACCTCAGTTAT+TGG 0.154797 4:-101592011 None:intergenic
TGAATTCCATTTACCTATAT+TGG 0.177421 4:+101593446 MsaT024630.1:CDS
TGTCATGAATCTACTGAAAT+AGG 0.183473 4:-101593597 None:intergenic
CATGAAAGTAAGCTTGATTT+TGG 0.185418 4:+101590256 MsaT024630.1:CDS
TCCAATTTGGCGGTGCCTTC+TGG 0.187946 4:-101590412 None:intergenic
CAAACATACCCGTCCATTTC+TGG 0.199510 4:-101592968 None:intergenic
TGCTGGTCATCAAGCAATTT+TGG 0.203159 4:+101590150 MsaT024630.1:CDS
AGCTTGCCTTCAGCAAGTTT+TGG 0.267697 4:+101592706 MsaT024630.1:CDS
TGAGAACCCAACAACCTAAA+AGG 0.270552 4:-101589689 None:intergenic
TTCTCAAATTAATGTTTCTA+TGG 0.271180 4:+101588951 MsaT024630.1:CDS
TTGAAGCAACTCGTCGAATT+CGG 0.272691 4:+101593367 MsaT024630.1:CDS
AGTGAGAAGGAAAGAGGTTT+TGG 0.273718 4:+101589033 MsaT024630.1:CDS
CAAAATCAAGCTTACTTTCA+TGG 0.285290 4:-101590255 None:intergenic
ATTGGTTGCCATACATGATT+AGG 0.295381 4:-101590207 None:intergenic
GGCTTTAAGCCCTCTAAAAC+TGG 0.307736 4:-101592054 None:intergenic
ACCAGAAGGCACCGCCAAAT+TGG 0.310432 4:+101590411 MsaT024630.1:CDS
TCATGGCCAATATAGGTAAA+TGG 0.311222 4:-101593452 None:intergenic
AAAACTCTTCATCAGCAATT+AGG 0.316824 4:-101591692 None:intergenic
TGAAGCAACTCGTCGAATTC+GGG 0.321951 4:+101593368 MsaT024630.1:CDS
GGATCTCCCATAACAATATC+TGG 0.330567 4:-101591284 None:intergenic
CAGAAGGGTTTCTGTAATAA+TGG 0.331115 4:-101589150 None:intergenic
CTGCTGATGAACGCAACAAC+TGG 0.339209 4:+101591655 MsaT024630.1:CDS
AGCTCGACTTCTAGAAATTA+TGG 0.341838 4:+101591855 MsaT024630.1:CDS
CTTAAAGCCGTTGTGGTTGA+TGG 0.345003 4:+101592068 MsaT024630.1:CDS
AATGAACTTTAACAAATATA+TGG 0.345150 4:-101591512 None:intergenic
ATCATTTGATGTTTCCTGTA+TGG 0.346790 4:-101590283 None:intergenic
TTTGTGATTCTTCTATTAAT+CGG 0.350778 4:+101590461 MsaT024630.1:CDS
TTCGAAAGGCCGCTACTTAG+TGG 0.361977 4:+101589331 MsaT024630.1:CDS
GGATATTCAAATGCCAGAAA+TGG 0.363538 4:+101592955 MsaT024630.1:CDS
AGAGAGGACATCATCGAGTA+TGG 0.366813 4:-101591066 None:intergenic
TAATGAGCTCTTCTGTTGTT+GGG 0.368418 4:-101589766 None:intergenic
TTCCTTTCTCGGCCCAAGAT+AGG 0.368808 4:+101591805 MsaT024630.1:CDS
TTATGAACAAGTCACCTTGA+TGG 0.371342 4:+101591755 MsaT024630.1:CDS
AATTTACTTGGTCAACTTGC+TGG 0.372381 4:+101590133 MsaT024630.1:CDS
TCGTATCATCTACAGCAAAA+TGG 0.372950 4:+101588997 MsaT024630.1:CDS
TTAATGAGCTCTTCTGTTGT+TGG 0.375076 4:-101589767 None:intergenic
TAAGTGCCTAGTTGAACTAA+TGG 0.375538 4:+101591905 MsaT024630.1:CDS
GTAGAAAGTGCTGTCCAATT+TGG 0.380449 4:-101590425 None:intergenic
CTAGTCACAGCAGCTCTAAC+AGG 0.385909 4:-101592095 None:intergenic
AAGGCATGAAAATCCTATCT+TGG 0.386310 4:-101591818 None:intergenic
TCAAGCTTTCCATTTGTTGC+GGG 0.386642 4:-101591552 None:intergenic
GGGAGCTTAGATTTGTAAAC+AGG 0.386741 4:-101589737 None:intergenic
GATCTTCAGTGTGCGCCAAC+TGG 0.387077 4:+101592538 MsaT024630.1:CDS
GGTTGACACTAACACTGAAT+TGG 0.390644 4:-101589093 None:intergenic
TTGGTTGCCATACATGATTA+GGG 0.392434 4:-101590206 None:intergenic
TCTGCTGTCATGGCCAATAT+AGG 0.397938 4:-101593459 None:intergenic
AAAGAGAGGCTTCACCGGTT+AGG 0.399569 4:+101589434 MsaT024630.1:CDS
AGTCGCAAATGCCATCAATA+AGG 0.400064 4:+101592151 MsaT024630.1:CDS
AAACATCACCTTCTTCGTAT+TGG 0.401351 4:-101590225 None:intergenic
AAAGTTCCAGATATTGTTAT+GGG 0.403106 4:+101591278 MsaT024630.1:CDS
GAAGCCACTGAGAGCTAGTA+TGG 0.403349 4:+101592679 MsaT024630.1:CDS
AAGAGAGGCTTCACCGGTTA+GGG 0.409347 4:+101589435 MsaT024630.1:CDS
TAAAGTTCCAGATATTGTTA+TGG 0.411623 4:+101591277 MsaT024630.1:CDS
TAAAGATTCTCTTCCTCAAA+AGG 0.411974 4:-101593543 None:intergenic
TGGGTAGTCTTTGTGATCAA+AGG 0.412517 4:+101589053 MsaT024630.1:CDS
AACAGAAAGCCCGCAACAAA+TGG 0.414966 4:+101591543 MsaT024630.1:CDS
GTTTCTATGGATTCTTCTGA+TGG 0.417958 4:+101588964 MsaT024630.1:CDS
CGAACTGAAGTTGAACCATT+AGG 0.418453 4:-101592764 None:intergenic
TGTGTCGAAGACACTGGAAT+TGG 0.420012 4:+101591780 MsaT024630.1:CDS
CTCAAGCTTTCCATTTGTTG+CGG 0.424158 4:-101591553 None:intergenic
TCAGTGTGCGCCAACTGGAC+TGG 0.427277 4:+101592543 MsaT024630.1:CDS
CAAATTGTAACAAATCTTGT+TGG 0.428971 4:+101591320 MsaT024630.1:CDS
TGGAATTGGAATTCCTTTCT+CGG 0.432442 4:+101591794 MsaT024630.1:CDS
TACTAATATTCGTAGCTAGA+AGG 0.432556 4:-101592604 None:intergenic
GATATTGTTATGGGAGATCC+TGG 0.437067 4:+101591287 MsaT024630.1:CDS
GTCTAGACACAAAGGTTTAG+AGG 0.439244 4:+101591103 MsaT024630.1:CDS
CTTCTGTTGTTGGGTTGTGA+GGG 0.443892 4:-101589757 None:intergenic
TTACCTAAAATGCCATTCAT+AGG 0.447126 4:-101590725 None:intergenic
AATTATGGTGGTACCGGCAT+TGG 0.449454 4:+101591870 MsaT024630.1:CDS
ATAATGAGAGCTAGAGCTAC+TGG 0.450935 4:+101589647 MsaT024630.1:CDS
GCAGAATCAGCACCACCCTT+TGG 0.456173 4:+101588862 MsaT024630.1:CDS
CATTCTGTTTCCAGTCCAGT+TGG 0.457489 4:-101592553 None:intergenic
GGGTAGTCTTTGTGATCAAA+GGG 0.462700 4:+101589054 MsaT024630.1:CDS
TCCAATAACTGAGGTGAAGA+AGG 0.463469 4:+101592010 MsaT024630.1:CDS
TTCAAAGTTACAAGAGCAAA+CGG 0.464582 4:+101588886 MsaT024630.1:CDS
AAGAGCAGCTTTGCCGCTAT+CGG 0.467101 4:-101592891 None:intergenic
TCTTCTGTTGTTGGGTTGTG+AGG 0.467157 4:-101589758 None:intergenic
TCAAAGTTACAAGAGCAAAC+GGG 0.468850 4:+101588887 MsaT024630.1:CDS
AGGCATGAAAATCCTATCTT+GGG 0.473309 4:-101591817 None:intergenic
ATAGAAGAATCACAAAGAAT+AGG 0.477698 4:-101590454 None:intergenic
AATAAGGCTGTTTCCTTGTG+TGG 0.480317 4:+101592167 MsaT024630.1:CDS
TCACTTGTGGAAAATTTACT+TGG 0.482007 4:+101590121 MsaT024630.1:CDS
AGATACCATTTGAAGAGACT+TGG 0.482768 4:+101592116 MsaT024630.1:CDS
GTCAAATAAACTTTATAAGC+CGG 0.482875 4:+101591931 MsaT024630.1:CDS
ACTGATCCCCTAATCATGTA+TGG 0.483235 4:+101590199 MsaT024630.1:CDS
GAGCTATCTGCCTGAACAAA+AGG 0.486203 4:-101591837 None:intergenic
CATGGGTTTGTGGAGAGGAC+GGG 0.486989 4:+101592516 MsaT024630.1:CDS
TCATGGGTTTGTGGAGAGGA+CGG 0.487640 4:+101592515 MsaT024630.1:CDS
GGTGCATACTCATCCCTAAC+CGG 0.487653 4:-101589448 None:intergenic
AGTATGGAACGAAGGTCAAA+TGG 0.489767 4:-101591050 None:intergenic
CAAGGAAACAGCCTTATTGA+TGG 0.489776 4:-101592162 None:intergenic
AAGTGCCTAGTTGAACTAAT+GGG 0.492093 4:+101591906 MsaT024630.1:CDS
AGGCGCCTGCAGCCACCCTC+CGG 0.492109 4:-101592838 None:intergenic
TCAGTTCGAAGCCTTCTGTT+CGG 0.494919 4:+101592779 MsaT024630.1:CDS
TCATTCAAGCACATAGAGCT+TGG 0.496464 4:+101588927 MsaT024630.1:CDS
GAGAACCCAACAACCTAAAA+GGG 0.497618 4:-101589688 None:intergenic
ATCCTATCTTGGGCCGAGAA+AGG 0.498744 4:-101591807 None:intergenic
GTATCCCAAGTCTCTTCAAA+TGG 0.499078 4:-101592121 None:intergenic
AAGCTTGAGACTTATCGAAA+TGG 0.503401 4:+101591567 MsaT024630.1:CDS
GGAAACATCAAATGATATGT+AGG 0.503498 4:+101590290 MsaT024630.1:CDS
CTGGGAAAAGAGTCGCCTAA+TGG 0.504300 4:+101592749 MsaT024630.1:CDS
AAAATCCGCGGTAAATGAAA+AGG 0.506447 4:-101591970 None:intergenic
GGATGATTTCCACGAAATGC+AGG 0.506772 4:+101590526 MsaT024630.1:CDS
GACTGCTCAGGCATGTGGTA+AGG 0.508840 4:+101590953 MsaT024630.1:CDS
GAGTCGATTGATATGATGTC+TGG 0.510772 4:+101589505 MsaT024630.1:CDS
GATGGAGAGGACAGCGAATG+AGG 0.511200 4:+101593392 MsaT024630.1:CDS
TTAATTGGAGGCAGATATGT+TGG 0.514349 4:+101590079 MsaT024630.1:intron
TTTATAAGCCGGCCGCAGGT+TGG 0.515174 4:+101591942 MsaT024630.1:CDS
CTTGTAACTTTGAAGCCAAA+GGG 0.516016 4:-101588877 None:intergenic
TGCACCGGTCATATTTGCTC+AGG 0.519789 4:+101589465 MsaT024630.1:CDS
TTAAAGCCGTTGTGGTTGAT+GGG 0.520906 4:+101592069 MsaT024630.1:CDS
TGAAGCTGGCAAATTAGAGC+TGG 0.522160 4:+101591019 MsaT024630.1:CDS
ATGAAGAGTGTTTGAAATGT+GGG 0.523905 4:+101593499 MsaT024630.1:CDS
GAAATTAGAACACCTATGAA+TGG 0.524054 4:+101590713 MsaT024630.1:CDS
TATAATCTCAAAACGCTAAG+TGG 0.524296 4:+101591624 MsaT024630.1:CDS
AACAGGCAAGAAGAGACAGC+TGG 0.524546 4:+101592730 MsaT024630.1:CDS
TTGTTCATAAAATTCATTCG+AGG 0.525613 4:-101591742 None:intergenic
AACACTCTTCATATGTAGCA+TGG 0.525664 4:-101593488 None:intergenic
CTTTGATGTGGAGTCACTTG+TGG 0.526300 4:+101590108 MsaT024630.1:CDS
TGTATGATTGTAGGAATGCT+TGG 0.526473 4:+101590882 MsaT024630.1:intron
CATCTACAGCAAAATGGACG+TGG 0.529606 4:+101589003 MsaT024630.1:CDS
TCTAGAAATTATGGTGGTAC+CGG 0.530180 4:+101591864 MsaT024630.1:CDS
ATGGATTACATCTGCTGTCA+TGG 0.530208 4:-101593469 None:intergenic
TTCAAATGCCAGAAATGGAC+GGG 0.532095 4:+101592960 MsaT024630.1:CDS
TACTAAAGTGAGAAGGAAAG+AGG 0.533010 4:+101589027 MsaT024630.1:CDS
GTAAACCGGAGGGTGGCTGC+AGG 0.533229 4:+101592833 MsaT024630.1:CDS
AATGGAAAGAGAGGCTTCAC+CGG 0.534549 4:+101589429 MsaT024630.1:CDS
AAACCCTTCTGCCATTGACC+AGG 0.535215 4:+101589162 MsaT024630.1:CDS
TCAAGCACAAACCTGGTCAA+TGG 0.536283 4:-101589173 None:intergenic
AGCCGATGTTGCCAAGTCAC+AGG 0.537666 4:+101590571 MsaT024630.1:CDS
TCTTGTAACTTTGAAGCCAA+AGG 0.538214 4:-101588878 None:intergenic
ATGGTCTGTGTCGAAGACAC+TGG 0.538586 4:+101591774 MsaT024630.1:CDS
AACTCGTCGAATTCGGGAGA+TGG 0.539466 4:+101593374 MsaT024630.1:CDS
AAACTTTATAAGCCGGCCGC+AGG 0.541024 4:+101591938 MsaT024630.1:CDS
TGTTTGAAATGTGGGATGGA+TGG 0.544805 4:+101593507 MsaT024630.1:CDS
TTTGATAAAGCTAAATCCGC+AGG 0.546457 4:+101592635 MsaT024630.1:CDS
CTGTTCCCAAAACTTGCTGA+AGG 0.546763 4:-101592712 None:intergenic
TTGTTGGGTTCTCATCATCT+CGG 0.549046 4:+101589698 MsaT024630.1:CDS
GTCGAATTCGGGAGATGGAG+AGG 0.549539 4:+101593379 MsaT024630.1:CDS
ATAAGGCTGTTTCCTTGTGT+GGG 0.549996 4:+101592168 MsaT024630.1:CDS
GAGCTCATTAAAGCGACCGC+AGG 0.550704 4:+101589779 MsaT024630.1:CDS
TGCTGATGAACGCAACAACT+GGG 0.552352 4:+101591656 MsaT024630.1:CDS
GTTAACAACTCTTTGTGCAT+AGG 0.556014 4:-101589359 None:intergenic
GACCGAGCGAAAATTGAAGC+TGG 0.556250 4:+101591005 MsaT024630.1:CDS
GAGAAGGATTCATGGGTTTG+TGG 0.557947 4:+101592506 MsaT024630.1:CDS
ATTGGAGGCAGATATGTTGG+AGG 0.558944 4:+101590082 MsaT024630.1:intron
TGACTATGCTCAGACTGCTC+AGG 0.560313 4:+101590941 MsaT024630.1:CDS
AGTCTGAGCATAGTCACGTT+GGG 0.560336 4:-101590934 None:intergenic
GTAGCTAGAAGGATCATTTG+AGG 0.560581 4:-101592593 None:intergenic
GGATTCATGGGTTTGTGGAG+AGG 0.561266 4:+101592511 MsaT024630.1:CDS
AGGTGCTTCCAACCTGCGGC+CGG 0.562519 4:-101591950 None:intergenic
GATACCATTTGAAGAGACTT+GGG 0.564437 4:+101592117 MsaT024630.1:CDS
ACTGATACTCAAACCAATGC+CGG 0.566091 4:-101591883 None:intergenic
TATGAAGAGTGTTTGAAATG+TGG 0.566182 4:+101593498 MsaT024630.1:CDS
GAAAGTGCTGTCCAATTTGG+CGG 0.567496 4:-101590422 None:intergenic
ACAATTTGTCTGAATCTCCC+AGG 0.568802 4:-101591305 None:intergenic
GTTTCCTGAGCAAATATGAC+CGG 0.569475 4:-101589469 None:intergenic
AAGGAAAAGTACCTGTGACT+TGG 0.570868 4:-101590582 None:intergenic
CACAAGTGACTCCACATCAA+AGG 0.571996 4:-101590107 None:intergenic
TATAAAGACAATGGAAAGAG+AGG 0.575171 4:+101589420 MsaT024630.1:CDS
GTTTGAGAAGCAGCATGGAG+TGG 0.575227 4:+101589396 MsaT024630.1:CDS
TAGAGGGCTTAAAGCCGTTG+TGG 0.575392 4:+101592061 MsaT024630.1:CDS
CTTGAGACTTATCGAAATGG+AGG 0.580908 4:+101591570 MsaT024630.1:CDS
TATGGCAACCAATACGAAGA+AGG 0.582214 4:+101590217 MsaT024630.1:CDS
CCACTGAGAGCTAGTATGGT+GGG 0.584057 4:+101592683 MsaT024630.1:CDS
CAAACCTGGTCAATGGCAGA+AGG 0.584600 4:-101589166 None:intergenic
TACCTGTGACTTGGCAACAT+CGG 0.584979 4:-101590573 None:intergenic
CTTAAATATTCCAAAATCCG+CGG 0.588225 4:-101591982 None:intergenic
GCTTGGTCTGCTTCTACGCA+CGG 0.590241 4:+101590899 MsaT024630.1:CDS
ATTCAAATGCCAGAAATGGA+CGG 0.591431 4:+101592959 MsaT024630.1:CDS
TAATGAGAGCTAGAGCTACT+GGG 0.593885 4:+101589648 MsaT024630.1:CDS
TGGAGTGGTTATAAAGACAA+TGG 0.596726 4:+101589411 MsaT024630.1:CDS
TTGATGACAATGGAGTAAAC+CGG 0.599633 4:+101592819 MsaT024630.1:CDS
ACTCTTCATCAGCAATTAGG+TGG 0.601724 4:-101591689 None:intergenic
GAGCAGTTTGAGAAGCAGCA+TGG 0.604333 4:+101589391 MsaT024630.1:CDS
ATGGAAAGTTGAAACAAGGA+TGG 0.605809 4:-101589131 None:intergenic
ACAGGCAAGAAGAGACAGCT+GGG 0.606308 4:+101592731 MsaT024630.1:CDS
AGCAAGCATCAAAATTGTGA+GGG 0.607346 4:-101592928 None:intergenic
GAGGAGACGAATGGTGAATG+TGG 0.607644 4:+101593411 MsaT024630.1:CDS
GGAGCTAAAAGTTCGAGCAG+AGG 0.610100 4:+101590547 MsaT024630.1:CDS
CAACTGGACTGGAAACAGAA+TGG 0.610211 4:+101592554 MsaT024630.1:CDS
GGATGGCAAGAGCATGAACA+TGG 0.613468 4:-101589114 None:intergenic
CAGTCTGAGCATAGTCACGT+TGG 0.615929 4:-101590935 None:intergenic
AAGTAGCGGCCTTTCGAAAG+CGG 0.618779 4:-101589326 None:intergenic
TTAAGCCCTCTAAAACTGGA+TGG 0.620083 4:-101592050 None:intergenic
GATGTGAAGTGTGCCGATAG+CGG 0.620620 4:+101592878 MsaT024630.1:CDS
TCAGAGAAGTCTAGACACAA+AGG 0.620996 4:+101591095 MsaT024630.1:CDS
AGCTCATTAAAGCGACCGCA+GGG 0.621429 4:+101589780 MsaT024630.1:CDS
TGGTTGCCATACATGATTAG+GGG 0.623830 4:-101590205 None:intergenic
CAAAGTTACAAGAGCAAACG+GGG 0.624122 4:+101588888 MsaT024630.1:CDS
AGAGTGTTTGAAATGTGGGA+TGG 0.624246 4:+101593503 MsaT024630.1:CDS
TGCACAAAGAGTTGTTAACT+CGG 0.624623 4:+101589363 MsaT024630.1:CDS
AAGCAAGCATCAAAATTGTG+AGG 0.627279 4:-101592929 None:intergenic
TGTTGGAGGATCCTTTGATG+TGG 0.629395 4:+101590096 MsaT024630.1:CDS
GTCTTCGACACAGACCATCA+AGG 0.633984 4:-101591769 None:intergenic
TTGAGACTTATCGAAATGGA+GGG 0.635447 4:+101591571 MsaT024630.1:CDS
AAACCTGGTCAATGGCAGAA+GGG 0.635904 4:-101589165 None:intergenic
CGGCTAGGACCGCTTTCGAA+AGG 0.636060 4:+101589317 MsaT024630.1:CDS
TTTGTACAGGTATCACCAGA+AGG 0.636717 4:+101590397 MsaT024630.1:intron
TGGCAAATTAGAGCTGGAAG+CGG 0.637994 4:+101591025 MsaT024630.1:CDS
CGAATGGTGAATGTGGTGAA+AGG 0.638437 4:+101593418 MsaT024630.1:CDS
GGGTTCTCATCATCTCGGTG+TGG 0.642737 4:+101589703 MsaT024630.1:CDS
AAAATGGTGCTTCCAGCACA+GGG 0.643044 4:+101592192 MsaT024630.1:CDS
GAATCATATTGTCAAAGTAG+AGG 0.643202 4:+101590505 MsaT024630.1:CDS
ATACTGCAGTTCACTGAGCG+AGG 0.645750 4:+101591489 MsaT024630.1:intron
GACCACCCATTAGTTCAACT+AGG 0.646099 4:-101591911 None:intergenic
GGTTAGGGATGAGTATGCAC+CGG 0.649698 4:+101589450 MsaT024630.1:CDS
GCCACTGAGAGCTAGTATGG+TGG 0.649946 4:+101592682 MsaT024630.1:CDS
GTAACTTTGAAGCCAAAGGG+TGG 0.650789 4:-101588874 None:intergenic
GCTCAGACTGCTCAGGCATG+TGG 0.653319 4:+101590948 MsaT024630.1:CDS
ACAGCGAATGAGGAGACGAA+TGG 0.654884 4:+101593402 MsaT024630.1:CDS
CACCGTATCACTAAAACCTG+CGG 0.656600 4:-101592651 None:intergenic
AATAATGGAAAGTTGAAACA+AGG 0.658333 4:-101589135 None:intergenic
GATTGATATGATGTCTGGAG+AGG 0.658590 4:+101589510 MsaT024630.1:CDS
ACATCATATCAATCGACTCA+AGG 0.660613 4:-101589501 None:intergenic
GAAGTTGTGCATGCATCTAG+CGG 0.666517 4:+101591600 MsaT024630.1:CDS
TAAGAAGAATCCAATAACTG+AGG 0.666691 4:+101592001 MsaT024630.1:CDS
ATATTGTTATGGGAGATCCT+GGG 0.667347 4:+101591288 MsaT024630.1:CDS
CAATGGAGTAAACCGGAGGG+TGG 0.669359 4:+101592826 MsaT024630.1:CDS
CATCATCGAGTATGGAACGA+AGG 0.675752 4:-101591058 None:intergenic
TGCCTAGTTGAACTAATGGG+TGG 0.680573 4:+101591909 MsaT024630.1:CDS
AAGGCCGCTACTTAGTGGAG+TGG 0.681896 4:+101589336 MsaT024630.1:CDS
GAAAAGGTGCTTCCAACCTG+CGG 0.683040 4:-101591954 None:intergenic
TCGACTTCTAGAAATTATGG+TGG 0.683726 4:+101591858 MsaT024630.1:CDS
ATCTACAGCAAAATGGACGT+GGG 0.684272 4:+101589004 MsaT024630.1:CDS
ATGACAATGGAGTAAACCGG+AGG 0.689272 4:+101592822 MsaT024630.1:CDS
TGACAATGGAGTAAACCGGA+GGG 0.689626 4:+101592823 MsaT024630.1:CDS
ACGTGGGTACTAAAGTGAGA+AGG 0.690355 4:+101589020 MsaT024630.1:CDS
AGGTTTCCCATCAACCACAA+CGG 0.697501 4:-101592075 None:intergenic
CCCACCATACTAGCTCTCAG+TGG 0.729319 4:-101592683 None:intergenic
TAGGCCACTCCACTAAGTAG+CGG 0.749192 4:-101589340 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr4 gene 101588836 101593617 101588836 ID=MsaG024630
Chr4 mRNA 101588836 101593617 101588836 ID=MsaT024630.1;Parent=MsaG024630
Chr4 exon 101588836 101589183 101588836 ID=MsaT024630.1.exon1;Parent=MsaT024630.1
Chr4 CDS 101588836 101589183 101588836 ID=cds.MsaT024630.1;Parent=MsaT024630.1
Chr4 exon 101589298 101589531 101589298 ID=MsaT024630.1.exon2;Parent=MsaT024630.1
Chr4 CDS 101589298 101589531 101589298 ID=cds.MsaT024630.1;Parent=MsaT024630.1
Chr4 exon 101589632 101589801 101589632 ID=MsaT024630.1.exon3;Parent=MsaT024630.1
Chr4 CDS 101589632 101589801 101589632 ID=cds.MsaT024630.1;Parent=MsaT024630.1
Chr4 exon 101590093 101590311 101590093 ID=MsaT024630.1.exon4;Parent=MsaT024630.1
Chr4 CDS 101590093 101590311 101590093 ID=cds.MsaT024630.1;Parent=MsaT024630.1
Chr4 exon 101590406 101590592 101590406 ID=MsaT024630.1.exon5;Parent=MsaT024630.1
Chr4 CDS 101590406 101590592 101590406 ID=cds.MsaT024630.1;Parent=MsaT024630.1
Chr4 exon 101590692 101590743 101590692 ID=MsaT024630.1.exon6;Parent=MsaT024630.1
Chr4 CDS 101590692 101590743 101590692 ID=cds.MsaT024630.1;Parent=MsaT024630.1
Chr4 exon 101590895 101591124 101590895 ID=MsaT024630.1.exon7;Parent=MsaT024630.1
Chr4 CDS 101590895 101591124 101590895 ID=cds.MsaT024630.1;Parent=MsaT024630.1
Chr4 exon 101591257 101591355 101591257 ID=MsaT024630.1.exon8;Parent=MsaT024630.1
Chr4 CDS 101591257 101591355 101591257 ID=cds.MsaT024630.1;Parent=MsaT024630.1
Chr4 exon 101591498 101592213 101591498 ID=MsaT024630.1.exon9;Parent=MsaT024630.1
Chr4 CDS 101591498 101592213 101591498 ID=cds.MsaT024630.1;Parent=MsaT024630.1
Chr4 exon 101592478 101592981 101592478 ID=MsaT024630.1.exon10;Parent=MsaT024630.1
Chr4 CDS 101592478 101592981 101592478 ID=cds.MsaT024630.1;Parent=MsaT024630.1
Chr4 exon 101593365 101593617 101593365 ID=MsaT024630.1.exon11;Parent=MsaT024630.1
Chr4 CDS 101593365 101593617 101593365 ID=cds.MsaT024630.1;Parent=MsaT024630.1
Gene Sequence

>MsaT024630.1

ATGGGTCTTCTCTTGAAGATGAAGATGCAGAATCAGCACCACCCTTTGGCTTCAAAGTTACAAGAGCAAACGGGGAACAAAAGATACACATTCATTCAAGCACATAGAGCTTGGCTTCTCAAATTAATGTTTCTATGGATTCTTCTGATGGCTCTGATTAGTCGTATCATCTACAGCAAAATGGACGTGGGTACTAAAGTGAGAAGGAAAGAGGTTTTGGGTAGTCTTTGTGATCAAAGGGCTAGAATGTTGCAAGACCAATTCAGTGTTAGTGTCAACCATGTTCATGCTCTTGCCATCCTTGTTTCAACTTTCCATTATTACAGAAACCCTTCTGCCATTGACCAGGAAACTTTTGCAGAATATACGGCTAGGACCGCTTTCGAAAGGCCGCTACTTAGTGGAGTGGCCTATGCACAAAGAGTTGTTAACTCGGAAAGAGAGCAGTTTGAGAAGCAGCATGGAGTGGTTATAAAGACAATGGAAAGAGAGGCTTCACCGGTTAGGGATGAGTATGCACCGGTCATATTTGCTCAGGAAACTCTCTCTTACCTTGAGTCGATTGATATGATGTCTGGAGAGGAGGATCGAGAGAACATAATGAGAGCTAGAGCTACTGGGAAAGCTGTTCTGACTAGCCCTTTTAGGTTGTTGGGTTCTCATCATCTCGGTGTGGTTTTAACATTTCCTGTTTACAAATCTAAGCTCCCTCACAACCCAACAACAGAAGAGCTCATTAAAGCGACCGCAGGATATGTTGGAGGATCCTTTGATGTGGAGTCACTTGTGGAAAATTTACTTGGTCAACTTGCTGGTCATCAAGCAATTTTGGTCAATGTATATGATGTCACGAACTCTACTGATCCCCTAATCATGTATGGCAACCAATACGAAGAAGGTGATGTTTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATCAAATGATATGTAGGTATCACCAGAAGGCACCGCCAAATTGGACAGCACTTTCTACTGCAGTCCTATTCTTTGTGATTCTTCTATTAATCGGTTACATTTTATATGGTGCTGGGAATCATATTGTCAAAGTAGAGGATGATTTCCACGAAATGCAGGAGCTAAAAGTTCGAGCAGAGGCAGCCGATGTTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCTATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTACGCACGGAATTGAACTCAACCCAACGTGACTATGCTCAGACTGCTCAGGCATGTGGTAAGGCTCTGATAGCATTAATAAATGAAGTGCTTGACCGAGCGAAAATTGAAGCTGGCAAATTAGAGCTGGAAGCGGTTCCATTTGACCTTCGTTCCATACTCGATGATGTCCTCTCTCTTTTTTCAGAGAAGTCTAGACACAAAGGTTTAGAGCTGGCAGTGTTCGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATTGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGCCATATATTTGTTAAAGTTCATTTATCCGAAAACAGAAAGCCCGCAACAAATGGAAAGCTTGAGACTTATCGAAATGGAGGGTCTGAAGAAGTTGTGCATGCATCTAGCGGTTATAATCTCAAAACGCTAAGTGGATATGAAGCTGCTGATGAACGCAACAACTGGGATAATTTTAACCACCTAATTGCTGATGAAGAGTTTTTCTGCGATGCTTCAACTAAAAAAGTGGCCTCGAATGAATTTTATGAACAAGTCACCTTGATGGTCTGTGTCGAAGACACTGGAATTGGAATTCCTTTCTCGGCCCAAGATAGGATTTTCATGCCTTTTGTTCAGGCAGATAGCTCGACTTCTAGAAATTATGGTGGTACCGGCATTGGTTTGAGTATCAGTAAGTGCCTAGTTGAACTAATGGGTGGTCAAATAAACTTTATAAGCCGGCCGCAGGTTGGAAGCACCTTTTCATTTACCGCGGATTTTGGAATATTTAAGAAGAATCCAATAACTGAGGTGAAGAAGGTTAACTATGAAGATCTACCATCCAGTTTTAGAGGGCTTAAAGCCGTTGTGGTTGATGGGAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTTGGGATACAAGCTAAAGTCGCAAATGCCATCAATAAGGCTGTTTCCTTGTGTGGGAAAAATGGTGCTTCCAGCACAGGGTTATTCCAGCCTGATATTATTTTTGTTGAGAAGGATTCATGGGTTTGTGGAGAGGACGGGATCTTCAGTGTGCGCCAACTGGACTGGAAACAGAATGGACATATATTTAAGATGCCTCAAATGATCCTTCTAGCTACGAATATTAGTAATGACGAATTTGATAAAGCTAAATCCGCAGGTTTTAGTGATACGGTGATCATGAAGCCACTGAGAGCTAGTATGGTGGGAGCTTGCCTTCAGCAAGTTTTGGGAACAGGCAAGAAGAGACAGCTGGGAAAAGAGTCGCCTAATGGTTCAACTTCAGTTCGAAGCCTTCTGTTCGGAAAGAAAATTTTAGTGGTTGATGACAATGGAGTAAACCGGAGGGTGGCTGCAGGCGCCTTGAAAAACTTTGGAGCGGATGTGAAGTGTGCCGATAGCGGCAAAGCTGCTCTTGAAATGCTTCAATTCCCTCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAAGCAACTCGTCGAATTCGGGAGATGGAGAGGACAGCGAATGAGGAGACGAATGGTGAATGTGGTGAAAGGAAAAGTGAATTCCATTTACCTATATTGGCCATGACAGCAGATGTAATCCATGCTACATATGAAGAGTGTTTGAAATGTGGGATGGATGGTTATGTCTCAAAACCTTTTGAGGAAGAGAATCTTTATCAAGCAGTTGCAAAGTTTTTCCAGACAAAACCTATTTCAGTAGATTCATGA

Protein sequence

>MsaT024630.1

MGLLLKMKMQNQHHPLASKLQEQTGNKRYTFIQAHRAWLLKLMFLWILLMALISRIIYSKMDVGTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSEREQFEKQHGVVIKTMEREASPVRDEYAPVIFAQETLSYLESIDMMSGEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPHNPTTEELIKATAGYVGGSFDVESLVENLLGQLAGHQAILVNVYDVTNSTDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAPPNWTALSTAVLFFVILLLIGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLSENRKPATNGKLETYRNGGSEEVVHASSGYNLKTLSGYEAADERNNWDNFNHLIADEEFFCDASTKKVASNEFYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGIFKKNPITEVKKVNYEDLPSSFRGLKAVVVDGKPVRAAVTRYHLKRLGIQAKVANAINKAVSLCGKNGASSTGLFQPDIIFVEKDSWVCGEDGIFSVRQLDWKQNGHIFKMPQMILLATNISNDEFDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQLGKESPNGSTSVRSLLFGKKILVVDDNGVNRRVAAGALKNFGADVKCADSGKAALEMLQFPHNFDACFMDIQMPEMDGFEATRRIREMERTANEETNGECGERKSEFHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFQTKPISVDS*