AlfalfaGEDB | MsaG024720

M. sativa ssp. caerulea / MsaG024720

KEGG: K10875
GO: GO:0000003 GO:0000018 GO:0000280 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033170 GO:0033554 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045003 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051701 GO:0051704 GO:0051716 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070887 GO:0071214 GO:0071241 GO:0071248 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0104004 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024720	XP_013453281.1	91.243	845	42	4	1	822	1	836	0.0	1553

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024720	sp\|Q0PCS3\|CHR25_ARATH	70.085	819	199	12	21	818	38	831	0.0	1163

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024720	tr\|A0A072UN86\|A0A072UN86_MEDTR	91.243	845	42	4	1	822	1	836	0.0	1553

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TFs/TRs:

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Gene ID	Type	Classification
MsaG024720	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024720	MtrunA17_Chr5g0393461	91.243	845	42	4	1	822	1	836	0.0	1553
MsaG024720	MtrunA17_Chr8g0384531	30.598	585	332	16	145	699	368	908	7.85e-71	253
MsaG024720	MtrunA17_Chr1g0183681	29.935	618	343	16	164	745	394	957	2.38e-70	253
MsaG024720	MtrunA17_Chr5g0394201	33.462	520	280	15	161	674	363	822	3.32e-67	242
MsaG024720	MtrunA17_Chr1g0205891	32.115	520	288	15	161	674	376	836	5.33e-65	236
MsaG024720	MtrunA17_Chr4g0040301	30.075	532	295	13	195	672	18	526	5.81e-63	226
MsaG024720	MtrunA17_Chr3g0095091	30.237	549	322	16	161	699	571	1068	1.88e-62	229
MsaG024720	MtrunA17_Chr5g0442141	29.922	645	369	21	161	791	617	1192	2.57e-62	229
MsaG024720	MtrunA17_Chr5g0403921	29.808	520	309	11	161	673	184	654	4.39e-62	223
MsaG024720	MtrunA17_Chr4g0066741	30.713	547	297	19	161	699	188	660	3.75e-61	224

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024720	AT3G19210.1	70.085	819	199	12	21	818	38	831	0.0	1163
MsaG024720	AT3G19210.2	68.987	819	206	13	21	818	38	829	0.0	1136
MsaG024720	AT3G19210.3	69.332	763	191	10	21	764	38	776	0.0	1072
MsaG024720	AT1G08600.4	32.397	605	323	19	161	702	719	1300	4.69e-79	280
MsaG024720	AT1G08600.3	32.397	605	323	19	161	702	719	1300	4.69e-79	280
MsaG024720	AT1G08600.2	32.397	605	323	19	161	702	719	1300	4.69e-79	280
MsaG024720	AT1G08600.1	32.107	598	313	18	161	702	719	1279	1.24e-77	275
MsaG024720	AT1G03750.1	31.729	561	309	14	161	672	139	674	3.02e-74	260
MsaG024720	AT2G18760.4	30.177	623	347	17	157	744	381	950	1.38e-73	262
MsaG024720	AT2G18760.1	30.177	623	347	17	157	744	381	950	1.38e-73	262

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Find 202 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCATCCATTGATATT+GGG	0.469154	5:+130040	None:intergenic
AAACCAAGTTGATGGAAAGC+TGG	0.556394	5:-121255	MsaT024720.1:CDS
AAACGACAGCGTCGCGGCAC+AGG	0.519079	5:-123537	MsaT024720.1:intron
AAAGACACCGTCTGGTACAG+AGG	0.582567	5:+121491	None:intergenic
AAAGTTATGCAATCATCCAA+AGG	0.620113	5:-127264	MsaT024720.1:intron
AAATATTACCTGATTAACTT+TGG	0.396814	5:+128785	None:intergenic
AAATTAGAATTAGAAGGAAG+AGG	0.504212	5:+130378	None:intergenic
AAATTGAACAAGTTTCACAA+CGG	0.700066	5:-130738	MsaT024720.1:CDS
AACAACGAGCACCTGTAAAT+CGG	0.402773	5:+129601	None:intergenic
AACAGGCCGCAGCAAGAGTT+TGG	0.360517	5:-123798	MsaT024720.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	121160	130857	121160	ID=MsaG024720
Chr5	mRNA	121160	130857	121160	ID=MsaT024720.1;Parent=MsaG024720
Chr5	exon	121160	121294	121160	ID=MsaT024720.1.exon21;Parent=MsaT024720.1
Chr5	CDS	121160	121294	121160	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	121470	121568	121470	ID=MsaT024720.1.exon20;Parent=MsaT024720.1
Chr5	CDS	121470	121568	121470	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	121765	121942	121765	ID=MsaT024720.1.exon19;Parent=MsaT024720.1
Chr5	CDS	121765	121942	121765	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	123393	123451	123393	ID=MsaT024720.1.exon18;Parent=MsaT024720.1
Chr5	CDS	123393	123451	123393	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	123538	123615	123538	ID=MsaT024720.1.exon17;Parent=MsaT024720.1
Chr5	CDS	123538	123615	123538	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	123732	123815	123732	ID=MsaT024720.1.exon16;Parent=MsaT024720.1
Chr5	CDS	123732	123815	123732	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	123927	124040	123927	ID=MsaT024720.1.exon15;Parent=MsaT024720.1
Chr5	CDS	123927	124040	123927	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	124150	124269	124150	ID=MsaT024720.1.exon14;Parent=MsaT024720.1
Chr5	CDS	124150	124269	124150	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	126642	126774	126642	ID=MsaT024720.1.exon13;Parent=MsaT024720.1
Chr5	CDS	126642	126774	126642	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	126857	126948	126857	ID=MsaT024720.1.exon12;Parent=MsaT024720.1
Chr5	CDS	126857	126948	126857	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	127265	127351	127265	ID=MsaT024720.1.exon11;Parent=MsaT024720.1
Chr5	CDS	127265	127351	127265	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	127450	127524	127450	ID=MsaT024720.1.exon10;Parent=MsaT024720.1
Chr5	CDS	127450	127524	127450	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	128539	128589	128539	ID=MsaT024720.1.exon9;Parent=MsaT024720.1
Chr5	CDS	128539	128589	128539	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	128794	128889	128794	ID=MsaT024720.1.exon8;Parent=MsaT024720.1
Chr5	CDS	128794	128889	128794	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	129170	129256	129170	ID=MsaT024720.1.exon7;Parent=MsaT024720.1
Chr5	CDS	129170	129256	129170	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	129355	129411	129355	ID=MsaT024720.1.exon6;Parent=MsaT024720.1
Chr5	CDS	129355	129411	129355	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	129487	129640	129487	ID=MsaT024720.1.exon5;Parent=MsaT024720.1
Chr5	CDS	129487	129640	129487	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	129687	129926	129687	ID=MsaT024720.1.exon4;Parent=MsaT024720.1
Chr5	CDS	129687	129926	129687	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	130025	130111	130025	ID=MsaT024720.1.exon3;Parent=MsaT024720.1
Chr5	CDS	130025	130111	130025	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	130324	130669	130324	ID=MsaT024720.1.exon2;Parent=MsaT024720.1
Chr5	CDS	130324	130669	130324	ID=cds.MsaT024720.1;Parent=MsaT024720.1
Chr5	exon	130707	130857	130707	ID=MsaT024720.1.exon1;Parent=MsaT024720.1
Chr5	CDS	130707	130857	130707	ID=cds.MsaT024720.1;Parent=MsaT024720.1

Gene Sequence

>MsaT024720.1

ATGTTGGAGGAAGACGAAGACGTAGTGTTGTTGTCATCGTCGTCTTCATCTGATTCCGATGAAGAAGTTGAAGTGTCATCGTCTTCTTCTGATTCCGAAATTGAACAAGTTTCACAACGGAAATCTCAGAATGTAGAAGCCCTAATCAAAGTATATTCCACCAATGGAGCTGCCGCTATTTGCAGAAAACCGTTTAAACCACCATCTGATGCTTACACCGATAACAGTAAACACGAGCGTGCTCGTAGGCTTTCTGCTCGCCAAAGGTTTGTCCCATGGGGTTCTACCACTCCTATTTCTATTCCCACCTCCGCCACACCTTTGACTGAGTTGGATTTGAATATCTCCGATCACAAAGAGGAGGCTGTGAAACCCTCGCCGCCCCTGCCCCCTGGAATTGATCCTCTAATACTCTGGCAACCTCTTCCTTCTAATTCTAATTTCACAACAATAGCCGTTGATCCTTTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAATTCATGTTTGATTGTGTCGCTGGACTATGTGAGACACCCAATATCAATGGATGCATTTTGGCAGATGATATGGGTTTGGGGAAGACACTGCAGTCCATCACATTACTATATACTCTTATTTGTCAAGGTTTCGATGGGAAGCCTATGGTTAGAAAGGCCATCATCGTCACTCCTACCAGTCTCGTTAGCAATTGGGAAGCAGAAATTAAGAAGTGGGTTGGAGATAGAGTTCGCCTTGTTGCTCTTTGTGAAACCACAAGACAAGATGTTATCTCCGGGATTAACAGTTTTACAAGTCCCAAGGCAAATTCCAGGAAAATAAAAACAACTCCCGATTTACAGGTGCTCGTTGTTTCATACGAGACATTCCGAATGCATTCAGAGAAGTTTAGCTCTAGTGGCTCCTGTGATCTCCTCATCTGTGACGAGGCTCACAGACTGAAAAATGATCAGACAATAACAAACAAGGCATTGGCTGCTCTCCCGTGTAAACGTAGAGTTTTGCTGTCAGGAACTCCTTTGCAGAATGACTTGGAAGAATTCTTTGCAATGGTTAATTTTACTAATCCTGGAATATTGGGCGGCATTGCACATTTTCGACGTTACTTTGAGGCTCCAATAATTTGCGGAAGAGAACCTGCTGCTACTGCAGAAGAGAAGAAACTCGGTGCTGAACGCACTGCAGAATTAAGTGCCAAAGTTAATCAGTTCATATTAAGAAGGACTAATGCATTGCTATCAAATCACTTACCACCGAAGATAATTGAAGTTGTTTGCTGCAAGTTGACTCCGCTACAATCAGATCTATATAAACATTTTATACAGTCCAAAAATGTTAAACGGGCGATTACTGAAGAACTGAAGCAATCGAAGATTTTGGCCTACATTACGGCTCTAAAAAAGTTATGCAATCATCCAAAGCTCATATATGATACCATACGAAGTGGGAGCCCAGGAACTTCAGGTTTTGAGGACTGCATCCGATTCTTCCCTCCAAATATGTTATCTGGACGGTCTGGATCATGGACAGGAGGGGATGGAGGCTGGGTTGAGCTTTCCAGTAAAATGCAAGTCTTGGCAAGGTTACTTCATCAATTACGCCAGAGAACAAATGATCGCATTGTCCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTTGCTCAATTGTGCCGGGAACGAAAGTACCCTCACTTGAGGCTTGATGGCGCTACATCAATCAGTAAAAGGCAAAAGTTGGTCAACTGCTTGAACGACCCGTCTAAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGGGCAAATCGACTCGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCCGCAGCAAGAGTTTGGAGGGATGGACAGAAGAAAAGAGTTTACATTTATAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGGCAAAAGAAGGGCTGCAAAAGGTCATTCAGAGGGAGCAAAACGACAGCGTCGCGGCACAGGGTAACTTTATCTCGACAGAGGATCTTAGCAATTTGTTTACTTTCGATGAGAACATCAAGTCAGAGATTCATGAAAATATGGGATGCAGTCGTTGCCAAAACAATGATGGGCTGCAAGACACTGATGTCTTATCATCAATGATTAATAGCGAATGTGGTGATGATGAAACCGCTGATATAGGTGGATTTGCTGAGATTGCAGGCTGCTTAGGGAATTTGAAAACATCAGAAAAGCAGGTAGGGAATCCATTAGAAGAAGATTTAAGTAGTTGGGGACATCATTTTTTCCCAACCTCTGTACCAGACGGTGTCTTTCAGGCTTCAGCTGGTGATGAGGTGACTTTTGTCTTCACAAACCAAGTTGATGGAAAGCTGGTACCGGTTGACTCCATAAGTCCCAAGCTACAGAAAAGGAATTACACAAGCCAAGCCATAGCGTCGGCGAAAATCCACCTTTGCTTTACGCAATAA

Protein sequence

>MsaT024720.1

MLEEDEDVVLLSSSSSSDSDEEVEVSSSSSDSEIEQVSQRKSQNVEALIKVYSTNGAAAICRKPFKPPSDAYTDNSKHERARRLSARQRFVPWGSTTPISIPTSATPLTELDLNISDHKEEAVKPSPPLPPGIDPLILWQPLPSNSNFTTIAVDPLLVRFLRPHQREGVQFMFDCVAGLCETPNINGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGDRVRLVALCETTRQDVISGINSFTSPKANSRKIKTTPDLQVLVVSYETFRMHSEKFSSSGSCDLLICDEAHRLKNDQTITNKALAALPCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGGIAHFRRYFEAPIICGREPAATAEEKKLGAERTAELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSDLYKHFIQSKNVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPNMLSGRSGSWTGGDGGWVELSSKMQVLARLLHQLRQRTNDRIVLVSNYTQTLDLFAQLCRERKYPHLRLDGATSISKRQKLVNCLNDPSKDEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMAKEGLQKVIQREQNDSVAAQGNFISTEDLSNLFTFDENIKSEIHENMGCSRCQNNDGLQDTDVLSSMINSECGDDETADIGGFAEIAGCLGNLKTSEKQVGNPLEEDLSSWGHHFFPTSVPDGVFQASAGDEVTFVFTNQVDGKLVPVDSISPKLQKRNYTSQAIASAKIHLCFTQ*