AlfalfaGEDB | MsaG024771

M. sativa ssp. caerulea / MsaG024771

KEGG: K08819
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0099402 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024771	XP_013459476.1	97.959	98	2	0	1	98	1	98	3.14e-58	196

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024771	sp\|Q5JK68\|CDKC2_ORYSJ	87.755	98	12	0	1	98	3	100	2.45e-53	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024771	tr\|A0A072UV62\|A0A072UV62_MEDTR	97.959	98	2	0	1	98	1	98	1.50e-58	196

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024771	MtrunA17_Chr3g0093391	97.959	98	2	0	1	98	1	98	2.89e-62	196
MsaG024771	MtrunA17_Chr3g0093571	92.857	98	7	0	1	98	3	100	6.20e-59	187
MsaG024771	MtrunA17_Chr4g0039141	85.484	62	9	0	1	62	81	142	4.42e-33	113
MsaG024771	MtrunA17_Chr4g0051261	53.623	69	32	0	23	91	4	72	1.55e-20	83.2
MsaG024771	MtrunA17_Chr2g0293491	53.623	69	32	0	23	91	4	72	2.14e-20	82.8
MsaG024771	MtrunA17_Chr4g0057791	60.000	65	26	0	18	82	213	277	1.60e-19	81.6
MsaG024771	MtrunA17_Chr4g0061141	58.333	72	28	2	21	91	103	173	1.26e-18	79.3
MsaG024771	MtrunA17_Chr1g0191221	56.000	75	31	2	18	91	117	190	1.74e-18	78.6
MsaG024771	MtrunA17_Chr3g0122781	58.108	74	31	0	16	89	409	482	2.57e-18	78.2
MsaG024771	MtrunA17_Chr8g0377071	56.000	75	33	0	15	89	377	451	4.73e-18	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024771	AT5G10270.1	85.859	99	13	1	1	98	3	101	3.84e-52	170
MsaG024771	AT5G64960.1	86.735	98	12	1	2	98	4	101	2.58e-51	168
MsaG024771	AT1G67580.1	58.667	75	31	0	15	89	398	472	6.27e-24	94.7
MsaG024771	AT1G67580.2	58.667	75	31	0	15	89	398	472	6.27e-24	94.7
MsaG024771	AT3G48750.1	54.167	72	33	0	20	91	1	72	4.31e-21	85.1
MsaG024771	AT5G63370.2	46.154	91	41	2	3	89	147	233	4.54e-19	80.9
MsaG024771	AT5G63370.3	46.154	91	41	2	3	89	147	233	4.54e-19	80.9
MsaG024771	AT5G63370.7	46.154	91	41	2	3	89	281	367	4.66e-19	80.9
MsaG024771	AT5G63370.8	46.154	91	41	2	3	89	281	367	4.66e-19	80.9
MsaG024771	AT5G63370.4	46.154	91	41	2	3	89	281	367	4.66e-19	80.9

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Find 25 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCGAACAAATCGGCGA+AGG	0.657326	5:+643594	MsaT024771.1:CDS
AAATCGGCGAAGGCACTTAT+GGG	0.452605	5:+643604	MsaT024771.1:CDS
AACTAGCAATGGCAGCAGCT+GGG	0.520780	5:+643514	None:intergenic
AAGGAAATCGTTACGTCTCC+AGG	0.454720	5:+643959	MsaT024771.1:CDS
ACGCTACGGGAACCACGCGA+AGG	0.656742	5:-643558	None:intergenic
ATGGCCAAAGAGATCGAAAC+CGG	0.536311	5:+643724	MsaT024771.1:CDS
ATTTCTCGTATAGCAGTAAT+AGG	0.291287	5:-643893	None:intergenic
CAAATCGGCGAAGGCACTTA+TGG	0.185430	5:+643603	MsaT024771.1:CDS
CAACTAGCAATGGCAGCAGC+TGG	0.409192	5:+643513	None:intergenic
CGTATGGATAATGAAAGAGA+AGG	0.557605	5:+643772	MsaT024771.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	643522	644000	643522	ID=MsaG024771
Chr5	mRNA	643522	644000	643522	ID=MsaT024771.1;Parent=MsaG024771
Chr5	exon	643522	643625	643522	ID=MsaT024771.1.exon1;Parent=MsaT024771.1
Chr5	CDS	643522	643625	643522	ID=cds.MsaT024771.1;Parent=MsaT024771.1
Chr5	exon	643714	643795	643714	ID=MsaT024771.1.exon2;Parent=MsaT024771.1
Chr5	CDS	643714	643795	643714	ID=cds.MsaT024771.1;Parent=MsaT024771.1
Chr5	exon	643890	644000	643890	ID=MsaT024771.1.exon3;Parent=MsaT024771.1
Chr5	CDS	643890	644000	643890	ID=cds.MsaT024771.1;Parent=MsaT024771.1

Gene Sequence	>MsaT024771.1 ATGGCAGCAGCTGGGCAACTAAACTTAATTGATTCACCTTCGCGTGGTTCCCGTAGCGTCGATTGCTTTGAGAAACTCGAACAAATCGGCGAAGGCACTTATGGTCAAGTTTACATGGCCAAAGAGATCGAAACCGGTGAAATTGTTGCTCTCAAGCAAATACGTATGGATAATGAAAGAGAAGGGTTTCCTATTACTGCTATACGAGAAATCAAAATTCTAAAGAAACTACATCATGAAAATGTTATCAAGTTAAAGGAAATCGTTACGTCTCCAGGCCCTGAGAAAGATGATTAA
Protein sequence	>MsaT024771.1 MAAAGQLNLIDSPSRGSRSVDCFEKLEQIGEGTYGQVYMAKEIETGEIVALKQIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDD*