AlfalfaGEDB | MsaG024777

M. sativa ssp. caerulea / MsaG024777

KEGG: -
GO: -
PFAM: PF01657.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024777	XP_024639718.1	93.887	638	38	1	1	637	1	638	0.0	1208

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024777	sp\|Q8GYA4\|CRK10_ARATH	44.961	645	313	13	26	636	32	668	3.50e-171	506

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024777	tr\|A0A396HN21\|A0A396HN21_MEDTR	93.887	638	38	1	1	637	1	638	0.0	1208

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024777	MtrunA17_Chr5g0394021	93.887	638	38	1	1	637	1	638	0.0	1208
MsaG024777	MtrunA17_Chr5g0394011	45.588	612	291	12	42	614	41	649	9.52e-176	515
MsaG024777	MtrunA17_Chr3g0081011	45.847	626	311	9	36	636	35	657	1.22e-175	514
MsaG024777	MtrunA17_Chr3g0081001	45.015	662	320	14	14	636	5	661	3.39e-173	508
MsaG024777	MtrunA17_Chr8g0354421	43.030	660	332	12	18	636	25	681	3.90e-171	503
MsaG024777	MtrunA17_Chr3g0081031	44.338	627	320	12	36	636	47	670	1.12e-169	499
MsaG024777	MtrunA17_Chr8g0354281	41.935	620	329	10	33	629	31	642	6.27e-162	479
MsaG024777	MtrunA17_Chr8g0354431	42.878	674	318	14	16	636	1	660	5.81e-161	477
MsaG024777	MtrunA17_Chr8g0354441	41.141	666	344	12	16	636	6	668	1.09e-160	476
MsaG024777	MtrunA17_Chr1g0206331	43.906	640	325	16	11	625	12	642	2.02e-160	475

Showing 1 to 10 of 513 entries

Previous1 2 3 4 5…52Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024777	AT4G23180.1	44.961	645	313	13	26	636	32	668	3.56e-172	506
MsaG024777	AT4G05200.2	43.328	637	312	13	7	606	27	651	1.43e-162	482
MsaG024777	AT4G05200.1	43.328	637	312	13	7	606	9	633	1.77e-162	481
MsaG024777	AT4G23160.1	42.464	617	316	7	36	620	50	659	1.89e-157	469
MsaG024777	AT4G23140.1	41.541	662	318	12	30	636	26	673	2.17e-155	463
MsaG024777	AT4G23140.2	41.168	668	318	13	30	636	26	679	3.34e-153	458
MsaG024777	AT4G23220.1	41.796	646	338	13	26	636	15	657	1.08e-151	453
MsaG024777	AT4G23230.1	40.924	606	318	10	34	608	29	625	1.74e-151	451
MsaG024777	AT4G23150.1	42.765	622	313	11	36	627	33	641	7.73e-151	451
MsaG024777	AT4G23200.1	40.439	638	338	13	10	615	5	632	5.06e-147	441

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Find 122 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATAGAAGACATGGT+TGG	0.615970	5:+708418	None:intergenic
AAACGGGTTGATATAATACA+TGG	0.574957	5:-709138	MsaT024777.1:CDS
AAAGATTTCAGACTTTGGAA+TGG	0.566781	5:-709013	MsaT024777.1:CDS
AAAGGCAAGTAATGTGTTGT+TGG	0.468882	5:-709052	MsaT024777.1:CDS
AAATTTGGTAACACTTCTTC+AGG	0.321108	5:-710720	MsaT024777.1:CDS
AACATTAAAAGATGCTATCT+TGG	0.394242	5:+710416	None:intergenic
AACCCAAAGATTTCAGACTT+TGG	0.413202	5:-709018	MsaT024777.1:CDS
AAGAGATGCAAGATCAATAA+AGG	0.332785	5:+709764	None:intergenic
AAGCAAGAGTACAAAGAACA+AGG	0.605451	5:+710883	None:intergenic
AAGCTCGGGGAAGGTGGCTT+TGG	0.282069	5:-709708	MsaT024777.1:CDS

Showing 1 to 10 of 122 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	708270	710946	708270	ID=MsaG024777
Chr5	mRNA	708270	710946	708270	ID=MsaT024777.1;Parent=MsaG024777
Chr5	exon	708270	708569	708270	ID=MsaT024777.1.exon7;Parent=MsaT024777.1
Chr5	CDS	708270	708569	708270	ID=cds.MsaT024777.1;Parent=MsaT024777.1
Chr5	exon	708648	708798	708648	ID=MsaT024777.1.exon6;Parent=MsaT024777.1
Chr5	CDS	708648	708798	708648	ID=cds.MsaT024777.1;Parent=MsaT024777.1
Chr5	exon	708955	709186	708955	ID=MsaT024777.1.exon5;Parent=MsaT024777.1
Chr5	CDS	708955	709186	708955	ID=cds.MsaT024777.1;Parent=MsaT024777.1
Chr5	exon	709401	709611	709401	ID=MsaT024777.1.exon4;Parent=MsaT024777.1
Chr5	CDS	709401	709611	709401	ID=cds.MsaT024777.1;Parent=MsaT024777.1
Chr5	exon	709695	709822	709695	ID=MsaT024777.1.exon3;Parent=MsaT024777.1
Chr5	CDS	709695	709822	709695	ID=cds.MsaT024777.1;Parent=MsaT024777.1
Chr5	exon	709981	710082	709981	ID=MsaT024777.1.exon2;Parent=MsaT024777.1
Chr5	CDS	709981	710082	709981	ID=cds.MsaT024777.1;Parent=MsaT024777.1
Chr5	exon	710157	710946	710157	ID=MsaT024777.1.exon1;Parent=MsaT024777.1
Chr5	CDS	710157	710946	710157	ID=cds.MsaT024777.1;Parent=MsaT024777.1

Gene Sequence

>MsaT024777.1

ATGTTTCATTATCCTATAGTTTCCAAATTCATTCAATTTTTCCTTGTTCTTTGTACTCTTGCTTTTCTTTCATATGTTGCCTTTGCAGATCCTCCATATGAAATTTGTTCCACAAGAAACAGTTATGCAAATGGAAGTTCCTTTGAGAACAATCTCAATAACTTACTTCTCTCTTTACCCTCTGATGATTCAAATCCAATCTCTAAATTTGGTAACACTTCTTCAGGAATTGGCCTAGATAGAGTTTATGGCCTCTACATGTGCCTCGACTTTGTTTCGAATGAAACTTGCCACAAATGTGTAACAAACGCAATAGCGGACATTTTAAAACTCTGTCCTCAATCAGAAGAAGCTGTTGTATATGAAGAGTTCTGTCAAGTACGTTATTCCAATAAAAATTTCATAGGCTCATTGAATGTCACTGAAAACATTGGAAAAGATAATGTACAGAATATTTCGGATCCGGTAAAATATGAGTCTGCTGTGAATAAGTTGTTGAATAGTCTTACCAAGATAGCATCTTTTAATGTTTCTGCTAATATGTATGCTACTGGAGAAGTACCTTTTGAAGATAAAACAATATATGCCTTAGTGCAGTGTACCAGAGATCTATCAGCTAATGATTGCAGTAGGTGTCTACTAAGTGCTATTGGTGATATACCAGGTTGCTGTTATGCCTCCATTGGTGCGAGAGTTATGAGTCGTAGCTGTTATCTGAGATATGAATTTTATCCATTTTATCTTGGTGAAAAAGAACAAACAAAGTCTTCAACCGACCTAGGAGGGAAAAATAATTCAAGCAAAATATGGATGATTACAGTCATTGCAGTTGGGGTAGGCTTGGTGATAATAATTTTCATTTGCTACTTGTGCTTTCTCAGAAATCGGCAAAGTAATAGAGGAAACGGAAAAATATGTAAGGATTTCCCCTTTATTGATCTTGCATCTCTTCGTGTGGCTACCAGAAACTTTACCGATTCAAATAAGCTCGGGGAAGGTGGCTTTGGGCCTGTTTACAAGGGTATACTTAGAGATGGCCAAGAAGTGGCAATCAAAAGGCTCTCAATTTGCTCTGAGCAGGGCTCAGAAGAATTCATTAACGAGGTTATGCTGATATTGAAACTTCAACACAAAAATCTTGTAAAACTTCTGGGATTTTGTGTGGATGGAGAAGAGAAGCTTCTTGTATATGAATATTTGCCCAATGGTAGTCTTGATGTTGTCCTTTTCGACCAACATGCACAGCTGGATTGGACGAAACGGGTTGATATAATACATGGAATAGCAAGGGGAATTCTCTATCTTCATGAAGATTCTAGACTTCAAATAATACATAGAGATCTAAAGGCAAGTAATGTGTTGTTGGACAATGACATGAACCCAAAGATTTCAGACTTTGGAATGGCCAGAATATTTGCAGGAAGTGAAGGTGAAGCTAACACTACTACAATAGTTGGCACATACGGATATATGGCTCCAGAGTATGCAATGGAGGGTCTATATTCCATAAAATCTGATGTTTTTGGCTTTGGAGTACTATTGCTTGAGATCATTACAGGGAAACGTAACGCGGGTTTCTGTTACTCTAAAACCACTCCTAGCCTTCTAGCATATGCATGGCATCTATGGAATGATGCAAAGGGATTGGAATTAAGGGATCCATTTTTATTATGCCCTGGAGACCAGTTTTTGAGATACATGAATATTGGACTGCTATGTGTTCAAGAAGATGCATTTGATAGGCCAACCATGTCTTCTATTGTTTTGATGTTGATGAATGAATCTGTAATGCTTGGCCAACCAGGAAAGCCTCCTTTCTCTGTTGGGAGACTCAGAGTTGATGATCAAAATGAGCTAGATTTGGATGAATATTCAGTCAATTTCTTAACTGTTTCTGATATCTTACCCCTGTAA

Protein sequence

>MsaT024777.1

MFHYPIVSKFIQFFLVLCTLAFLSYVAFADPPYEICSTRNSYANGSSFENNLNNLLLSLPSDDSNPISKFGNTSSGIGLDRVYGLYMCLDFVSNETCHKCVTNAIADILKLCPQSEEAVVYEEFCQVRYSNKNFIGSLNVTENIGKDNVQNISDPVKYESAVNKLLNSLTKIASFNVSANMYATGEVPFEDKTIYALVQCTRDLSANDCSRCLLSAIGDIPGCCYASIGARVMSRSCYLRYEFYPFYLGEKEQTKSSTDLGGKNNSSKIWMITVIAVGVGLVIIIFICYLCFLRNRQSNRGNGKICKDFPFIDLASLRVATRNFTDSNKLGEGGFGPVYKGILRDGQEVAIKRLSICSEQGSEEFINEVMLILKLQHKNLVKLLGFCVDGEEKLLVYEYLPNGSLDVVLFDQHAQLDWTKRVDIIHGIARGILYLHEDSRLQIIHRDLKASNVLLDNDMNPKISDFGMARIFAGSEGEANTTTIVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIITGKRNAGFCYSKTTPSLLAYAWHLWNDAKGLELRDPFLLCPGDQFLRYMNIGLLCVQEDAFDRPTMSSIVLMLMNESVMLGQPGKPPFSVGRLRVDDQNELDLDEYSVNFLTVSDILPL*