AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG024783


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG024783 MtrunA17_Chr5g0394111 84.203 709 54 3 13 721 1 651 0.0 1204
MsaG024783 MtrunA17_Chr2g0322731 52.758 707 301 13 23 716 79 765 0.0 698
MsaG024783 MtrunA17_Chr4g0024351 52.273 704 294 13 32 716 49 729 0.0 686
MsaG024783 MtrunA17_Chr8g0350321 43.069 743 372 13 12 716 77 806 0.0 578
MsaG024783 MtrunA17_Chr7g0246631 43.478 713 366 13 29 716 74 774 0.0 565
MsaG024783 MtrunA17_Chr1g0203671 39.407 708 384 15 43 716 93 789 2.88e-173 516
MsaG024783 MtrunA17_Chr2g0331581 38.799 683 367 14 49 716 143 789 3.24e-158 477
MsaG024783 MtrunA17_Chr6g0472471 38.122 724 384 16 37 716 62 765 5.96e-156 470
MsaG024783 MtrunA17_Chr6g0481041 36.402 717 389 16 45 716 29 723 1.01e-148 451
MsaG024783 MtrunA17_Chr5g0410711 35.403 757 435 19 1 716 35 778 3.66e-144 441
MsaG024783 MtrunA17_Chr7g0224451 35.208 480 237 15 45 510 16 435 1.06e-82 269
MsaG024783 MtrunA17_Chr2g0292731 34.405 529 307 14 210 717 40 549 1.90e-82 272
MsaG024783 MtrunA17_Chr2g0292741 33.654 520 322 12 208 717 30 536 4.52e-78 260
MsaG024783 MtrunA17_Chr2g0292761 33.673 490 289 11 234 717 82 541 3.59e-69 236
MsaG024783 MtrunA17_Chr7g0224491 37.888 322 154 9 412 716 1 293 2.61e-56 194
MsaG024783 MtrunA17_Chr7g0224481 34.483 377 182 12 45 409 16 339 1.94e-54 190
MsaG024783 MtrunA17_Chr2g0319671 43.429 175 87 2 283 457 103 265 2.76e-41 153
MsaG024783 MtrunA17_Chr2g0319681 29.004 231 151 4 493 716 1 225 2.24e-26 108
MsaG024783 MtrunA17_Chr1g0205981 38.119 202 99 7 100 289 1 188 2.71e-26 107
MsaG024783 MtrunA17_Chr2g0319701 32.456 228 137 7 497 716 5 223 6.81e-26 107
MsaG024783 MtrunA17_Chr2g0319691 44.643 112 54 1 344 455 1 104 6.60e-25 101
MsaG024783 MtrunA17_Chr5g0419821 36.879 141 79 3 34 164 14 154 3.11e-24 100
MsaG024783 MtrunA17_Chr2g0304191 35.385 130 83 1 239 367 1 130 5.13e-15 72.4
MsaG024783 MtrunA17_Chr7g0224461 40.496 121 52 3 609 716 1 114 1.36e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG024783 AT4G04890.2 54.825 715 285 12 23 716 38 735 0.0 764
MsaG024783 AT4G04890.1 54.825 715 285 12 23 716 38 735 0.0 764
MsaG024783 AT4G21750.2 53.752 733 287 13 27 720 42 761 0.0 763
MsaG024783 AT4G21750.1 53.752 733 287 13 27 720 42 761 0.0 763
MsaG024783 AT4G21750.3 53.752 733 287 13 27 720 42 761 0.0 763
MsaG024783 AT4G21750.4 53.752 733 287 13 27 720 42 761 0.0 763
MsaG024783 AT1G05230.8 50.288 694 314 9 29 716 48 716 0.0 676
MsaG024783 AT1G05230.4 50.288 694 314 9 29 716 48 716 0.0 676
MsaG024783 AT1G05230.9 50.288 694 314 9 29 716 48 716 0.0 676
MsaG024783 AT1G05230.10 50.288 694 314 9 29 716 48 716 0.0 676
MsaG024783 AT1G05230.7 50.288 694 314 9 29 716 48 716 0.0 676
MsaG024783 AT1G05230.11 50.288 694 314 9 29 716 48 716 0.0 676
MsaG024783 AT1G05230.2 50.288 694 314 9 29 716 48 716 0.0 676
MsaG024783 AT1G05230.6 50.288 694 314 9 29 716 48 716 0.0 676
MsaG024783 AT1G05230.5 50.288 694 314 9 29 716 48 716 0.0 676
MsaG024783 AT1G05230.1 50.288 694 314 9 29 716 48 716 0.0 676
MsaG024783 AT1G05230.3 50.288 694 312 10 29 716 48 714 0.0 670
MsaG024783 AT4G00730.1 42.817 717 369 14 20 716 103 798 0.0 545
MsaG024783 AT1G05230.12 48.700 577 268 8 29 599 48 602 0.0 541
MsaG024783 AT3G61150.1 39.789 759 379 17 8 716 73 803 1.72e-179 533
MsaG024783 AT2G32370.1 41.364 689 355 17 41 713 62 717 1.27e-162 486
MsaG024783 AT5G52170.3 38.286 700 362 13 29 716 37 678 9.66e-158 473
MsaG024783 AT5G52170.1 38.286 700 362 13 29 716 37 678 9.66e-158 473
MsaG024783 AT5G52170.2 38.088 701 367 13 29 716 37 683 4.93e-156 468
MsaG024783 AT1G73360.1 37.800 709 377 17 45 716 32 713 2.13e-146 444
MsaG024783 AT1G79840.3 37.717 692 368 17 41 716 40 684 5.35e-146 442
MsaG024783 AT1G79840.6 37.717 692 368 17 41 716 40 684 5.35e-146 442
MsaG024783 AT1G79840.1 37.717 692 368 17 41 716 98 742 6.89e-145 441
MsaG024783 AT1G79840.2 37.717 692 368 17 41 716 127 771 1.40e-144 442
MsaG024783 AT1G17920.2 38.316 689 372 13 49 716 25 681 3.32e-144 438
MsaG024783 AT1G17920.1 38.316 689 372 13 49 716 25 681 3.32e-144 438
MsaG024783 AT5G46880.3 34.771 719 416 19 36 716 103 806 2.98e-126 395
MsaG024783 AT5G46880.1 34.771 719 416 19 36 716 103 806 2.98e-126 395
MsaG024783 AT5G46880.2 34.771 719 416 19 36 716 103 806 2.98e-126 395
MsaG024783 AT1G79840.4 37.809 566 299 14 41 596 98 620 7.18e-120 373
MsaG024783 AT3G03260.1 33.764 696 405 19 46 713 24 691 6.95e-112 354
MsaG024783 AT4G17710.1 34.488 693 373 20 37 717 81 704 1.46e-111 353
MsaG024783 AT4G25530.1 33.923 678 404 18 46 716 42 682 2.53e-108 344
MsaG024783 AT4G00730.2 40.129 466 248 9 20 470 103 552 6.21e-102 324
MsaG024783 AT5G17320.1 32.083 720 427 24 37 716 18 715 1.51e-95 311
MsaG024783 AT1G79840.5 38.636 440 220 12 41 471 98 496 3.11e-88 286
MsaG024783 AT1G34650.1 31.152 703 430 18 50 716 21 705 3.77e-88 292
MsaG024783 AT3G03260.2 32.775 537 325 15 46 568 24 538 2.96e-79 263
MsaG024783 AT5G07260.1 26.354 554 329 22 111 657 10 491 1.15e-29 124
MsaG024783 AT5G07260.2 26.268 552 327 21 111 657 10 486 4.52e-29 122

Find 192 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCACGCTCTGCTGATTT+TGG 0.190379 5:+802629 MsaT024783.1:CDS
GTTAATTCTGGACTTGCTTT+TGG 0.195569 5:+803825 MsaT024783.1:CDS
AACTGCATCCAGATGGAATA+TGG 0.242195 5:+803484 MsaT024783.1:CDS
TCTCTTCTCTGAGCATCATT+AGG 0.259035 5:-801856 None:intergenic
CCAACCAACGTCCCAGAAAA+AGG 0.260396 5:+801646 MsaT024783.1:CDS
ATTTCAAATGGTCGTGATTC+TGG 0.286392 5:+804441 MsaT024783.1:CDS
ACGCCAGCTTGAAAGGTATA+TGG 0.288034 5:+802547 MsaT024783.1:intron
TGGGACGTTGGTTGGGTTGC+TGG 0.298706 5:-801638 None:intergenic
TATAAACCTCTAGTTAATTC+TGG 0.304749 5:+803813 MsaT024783.1:CDS
TGGCTCCTCCGTACAGATTA+AGG 0.307811 5:+802712 MsaT024783.1:CDS
ACCCAACGCAAATCAAGTTT+TGG 0.325446 5:+801902 MsaT024783.1:CDS
AACACCCTCCTTGGAGGAAC+TGG 0.338188 5:-804241 None:intergenic
GAGAATTGCACTGATGTAAC+TGG 0.338466 5:+804627 MsaT024783.1:CDS
AAGACCTTAGTGAGACCATT+TGG 0.340133 5:-803621 None:intergenic
CGTCTTACTCTGCTTCCTTC+CGG 0.342730 5:+804720 MsaT024783.1:CDS
ACAACCTCCGGTCCGTTTCC+AGG 0.348649 5:-804130 None:intergenic
GTTTACAGTATCTCACAAAA+TGG 0.349194 5:-803464 None:intergenic
CTCTTCTCTGAGCATCATTA+GGG 0.354899 5:-801855 None:intergenic
CCAGATCCGACATTCATAAT+TGG 0.363963 5:-804783 None:intergenic
GAGAATCTCAGTGACATAAT+TGG 0.367087 5:-802834 None:intergenic
GACTTGAGTCGCCGCCATTC+AGG 0.368603 5:-804698 None:intergenic
TTATATAGGTTCAAACTGAT+AGG 0.374562 5:+802182 MsaT024783.1:intron
ACAGCAACAAATTGATGAAA+TGG 0.376687 5:+801686 MsaT024783.1:CDS
AAGGAGCCTCCACGTTCATT+TGG 0.384232 5:-801605 None:intergenic
ACTTACAGTGATACGAAATA+AGG 0.385266 5:-804475 None:intergenic
ACCAAACTGGCTAGGACATA+TGG 0.389902 5:+802791 MsaT024783.1:CDS
ATTGTTGGATGATGTTATAT+TGG 0.393371 5:-802594 None:intergenic
GAGATGAAGTTAATAGATAC+AGG 0.396482 5:+802245 MsaT024783.1:CDS
GTTGTAGAGCTTGCTGTTGT+TGG 0.396518 5:+802755 MsaT024783.1:CDS
TCCACATGCAAGGCTAGCTC+TGG 0.401494 5:+804851 MsaT024783.1:CDS
CGGCGGTATAGTTCATGAAT+TGG 0.401952 5:+804413 MsaT024783.1:CDS
CCAATTATGAATGTCGGATC+TGG 0.406349 5:+804783 MsaT024783.1:CDS
ACACTTGAAGTCCTTTCAAC+TGG 0.406882 5:+803253 MsaT024783.1:CDS
AAGTATTTCCCAAGGGCTAA+TGG 0.411663 5:+802875 MsaT024783.1:CDS
AGAGAAGAGAGCTGAGCCTT+CGG 0.419978 5:+801869 MsaT024783.1:CDS
GGTTGCTGGTCATCACTTGA+AGG 0.429873 5:-801624 None:intergenic
AGCTTTAATCCCAATGTGTT+GGG 0.429957 5:-802899 None:intergenic
CTCTGAGCATCATTAGGGTT+AGG 0.434546 5:-801850 None:intergenic
AGACCTTAGTGAGACCATTT+GGG 0.436761 5:-803620 None:intergenic
GCATTTGTTATACACCCATC+TGG 0.446371 5:-804756 None:intergenic
GACTGGAGAATGCTCTCTTA+AGG 0.451510 5:+802347 MsaT024783.1:CDS
TCCATATGTCCTAGCCAGTT+TGG 0.452823 5:-802792 None:intergenic
CGCCAGCTTGAAAGGTATAT+GGG 0.454469 5:+802548 MsaT024783.1:intron
TTCAGGATTTCATGCATTGT+AGG 0.456298 5:-804681 None:intergenic
GCCACTACCCATATTCCATC+TGG 0.457430 5:-803492 None:intergenic
AGAAAATCAAACACCCTCCT+TGG 0.457924 5:-804250 None:intergenic
ACCAAAACTTGATTTGCGTT+GGG 0.459278 5:-801903 None:intergenic
TAATGAAATTAGATGCCATT+AGG 0.460205 5:-804939 None:intergenic
TGACATTTCCCCAGCGGTAG+TGG 0.460740 5:-802305 None:intergenic
GGAGAGGCTTTCACTGTTGG+TGG 0.462617 5:+802692 MsaT024783.1:CDS
GCAAGAACATGTATCAGAAT+AGG 0.464753 5:+801556 MsaT024783.1:CDS
AAAACTGCAGTGATGCCTAA+TGG 0.465524 5:+804924 MsaT024783.1:CDS
GGCTCCTCCGTACAGATTAA+GGG 0.467368 5:+802713 MsaT024783.1:CDS
GCTAGCTTTAGTACAAGTAT+TGG 0.471031 5:+804076 MsaT024783.1:CDS
GTAGGAGAGGCTTTCACTGT+TGG 0.472074 5:+802689 MsaT024783.1:CDS
TGTTGGGACCATTAGCCCTT+GGG 0.476328 5:-802883 None:intergenic
TTGCTGTGTGTGGCGGCGAT+AGG 0.479639 5:-801670 None:intergenic
ATGAGGATATCTACAAGATC+AGG 0.482347 5:-802962 None:intergenic
GAATTGGCTCACATTTCAAA+TGG 0.482575 5:+804429 MsaT024783.1:CDS
GCTAATGGTCCCAACACATT+GGG 0.483917 5:+802890 MsaT024783.1:CDS
ACATTGGGATTAAAGCTTGA+GGG 0.484683 5:+802905 MsaT024783.1:CDS
AACCAAAACTTGATTTGCGT+TGG 0.487544 5:-801904 None:intergenic
AGAGCTTGCTGTTGTTGGAA+TGG 0.487738 5:+802760 MsaT024783.1:CDS
GTTCTTCTACAACACATGCT+TGG 0.487768 5:+804098 MsaT024783.1:CDS
AAACGGCCACCAACGTTCCA+CGG 0.489293 5:+803901 MsaT024783.1:CDS
AATGGCTGAACTGACCAAAC+TGG 0.494651 5:+802778 MsaT024783.1:CDS
TGACGATCAGCAGCTAAGAC+TGG 0.495757 5:+802330 MsaT024783.1:CDS
AAGCTTTAATCCCAATGTGT+TGG 0.498683 5:-802900 None:intergenic
TTTGGCTTCCAGTTCCTCCA+AGG 0.503857 5:+804233 MsaT024783.1:CDS
CCACTGTTAACACTTTGATC+AGG 0.506278 5:+804883 MsaT024783.1:CDS
GTCATGACCATTACAACCTC+CGG 0.508691 5:-804142 None:intergenic
AAATGTAGAAGTTGATGATC+AGG 0.509315 5:+803776 MsaT024783.1:CDS
TATATAGGTTCAAACTGATA+GGG 0.512992 5:+802183 MsaT024783.1:intron
GCTTCCAGTTCCTCCAAGGA+GGG 0.515083 5:+804237 MsaT024783.1:CDS
GAGAGCTGAGCCTTCGGACC+GGG 0.516878 5:+801875 MsaT024783.1:CDS
AGAGAGCTGAGCCTTCGGAC+CGG 0.520073 5:+801874 MsaT024783.1:CDS
ACTGCATCCAGATGGAATAT+GGG 0.521116 5:+803485 MsaT024783.1:CDS
GAAGTCCTTTCAACTGGAGT+GGG 0.523037 5:+803259 MsaT024783.1:CDS
ATTGAATCTTGCGGAAAGGT+TGG 0.528383 5:+804051 MsaT024783.1:CDS
AACGGCCACCAACGTTCCAC+GGG 0.530317 5:+803902 MsaT024783.1:CDS
GGGTCTTAATGAGAAGCAAA+GGG 0.531547 5:+802733 MsaT024783.1:CDS
AACAACATGAGTGCTATTGT+TGG 0.531872 5:-802609 None:intergenic
TATGTCACTGAGATTCTCAA+TGG 0.532052 5:+802839 MsaT024783.1:CDS
TGGACAAAGGTACCTGGAAA+CGG 0.533786 5:+804118 MsaT024783.1:CDS
AAATCAAACACCCTCCTTGG+AGG 0.534430 5:-804247 None:intergenic
AGGGTCTTAATGAGAAGCAA+AGG 0.534523 5:+802732 MsaT024783.1:CDS
TGCATTGTAGGTATTTGCAC+AGG 0.535629 5:-804669 None:intergenic
ATTAGTACTTACCACTTGCA+AGG 0.535950 5:-803299 None:intergenic
GATTTGCGTTGGGTCTAACC+CGG 0.536665 5:-801893 None:intergenic
TTGATTGAGACACTCCCAAA+TGG 0.537043 5:+803606 MsaT024783.1:CDS
GAATGCTCTCTTAAGGAAAG+AGG 0.538971 5:+802354 MsaT024783.1:CDS
CGAGTAGGAACATGTGGGGA+GGG 0.539762 5:-803435 None:intergenic
GTGTTGGGACCATTAGCCCT+TGG 0.540053 5:-802884 None:intergenic
TGTGGAAGTTCCACTACCGC+TGG 0.541115 5:+802295 MsaT024783.1:CDS
GGCTAATGGTCCCAACACAT+TGG 0.544303 5:+802889 MsaT024783.1:CDS
CATGCTTGGACAAAGGTACC+TGG 0.544698 5:+804112 MsaT024783.1:CDS
GCACTTAGCACAACACTGAC+GGG 0.544921 5:-804199 None:intergenic
TGAAGTCCTTTCAACTGGAG+TGG 0.545864 5:+803258 MsaT024783.1:CDS
AAACGGACCGGAGGTTGTAA+TGG 0.547300 5:+804135 MsaT024783.1:CDS
CATCAATTTGTTGCTGTGTG+TGG 0.548832 5:-801680 None:intergenic
ATTATGAATGTCGGATCTGG+AGG 0.550174 5:+804786 MsaT024783.1:CDS
GGCTTCCAGTTCCTCCAAGG+AGG 0.551888 5:+804236 MsaT024783.1:CDS
TACCTCCCACTCCAGTTGAA+AGG 0.552733 5:-803264 None:intergenic
GATGGGTGTATAACAAATGC+AGG 0.554349 5:+804759 MsaT024783.1:CDS
TACTGTAAACTGCATCCAGA+TGG 0.557363 5:+803477 MsaT024783.1:CDS
TACAACACATGCTTGGACAA+AGG 0.558020 5:+804105 MsaT024783.1:CDS
CACATTGGGATTAAAGCTTG+AGG 0.558168 5:+802904 MsaT024783.1:CDS
TTGGGTCTAACCCGGTCCGA+AGG 0.562141 5:-801885 None:intergenic
CAGTGGGATATTCTCTCCGC+CGG 0.564704 5:+804393 MsaT024783.1:intron
CTGAACTGACCAAACTGGCT+AGG 0.569467 5:+802783 MsaT024783.1:CDS
GAAAAGTATATTGAATCTTG+CGG 0.569980 5:+804042 MsaT024783.1:CDS
GTGGAAGTTCCACTACCGCT+GGG 0.571737 5:+802296 MsaT024783.1:CDS
ATATTGGCACGGGAATCTGC+AGG 0.571975 5:-802578 None:intergenic
AATTGGTGGGAAGCCAAAGA+GGG 0.573774 5:-802817 None:intergenic
GTTACCACATGCAACGTATG+TGG 0.576120 5:+802277 MsaT024783.1:CDS
AGCACTTAGCACAACACTGA+CGG 0.577940 5:-804200 None:intergenic
AATCTCAGTGACATAATTGG+TGG 0.578666 5:-802831 None:intergenic
GGAGTTGCTGGTGGTAACAA+TGG 0.581415 5:+802650 MsaT024783.1:CDS
ATTAAGACCCTTAATCTGTA+CGG 0.581991 5:-802720 None:intergenic
TGATCTTGTAGATATCCTCA+TGG 0.582197 5:+802964 MsaT024783.1:CDS
GGATGATGTTATATTGGCAC+GGG 0.584066 5:-802588 None:intergenic
GCAGGACCAATTATGAATGT+CGG 0.584913 5:+804777 MsaT024783.1:CDS
ACAACCAGAGGGTCTTCTGT+TGG 0.585992 5:-803583 None:intergenic
ATGTTCCCGTGGAACGTTGG+TGG 0.586357 5:-803907 None:intergenic
AGAACCAACAGAAGACCCTC+TGG 0.588399 5:+803579 MsaT024783.1:CDS
AACGTTCCACGGGAACATCA+TGG 0.588608 5:+803912 MsaT024783.1:CDS
GAGTAGGAACATGTGGGGAG+GGG 0.590439 5:-803434 None:intergenic
TTGATTCTATTCCACATGCA+AGG 0.590966 5:+804841 MsaT024783.1:CDS
GAACAGGCGCACTTCACTCA+AGG 0.594716 5:+801930 MsaT024783.1:CDS
CAATTTGTTGCTGTGTGTGG+CGG 0.596318 5:-801677 None:intergenic
GTATATTGAATCTTGCGGAA+AGG 0.597531 5:+804047 MsaT024783.1:CDS
GTCCTTTCAACTGGAGTGGG+AGG 0.597763 5:+803262 MsaT024783.1:CDS
CCACATGCAAGGCTAGCTCT+GGG 0.598313 5:+804852 MsaT024783.1:CDS
AATACATGAAGTATTTCCCA+AGG 0.599100 5:+802867 MsaT024783.1:CDS
ATCTCAGTGACATAATTGGT+GGG 0.600678 5:-802830 None:intergenic
TGATCAGGAACACTGTGGAA+AGG 0.601274 5:+804898 MsaT024783.1:CDS
AAAGGTACCTGGAAACGGAC+CGG 0.603908 5:+804123 MsaT024783.1:CDS
CACTGAGATTCTCAATGGAG+AGG 0.605470 5:+802844 MsaT024783.1:CDS
TGTTGCATTTAACAGATGCA+AGG 0.605749 5:-803523 None:intergenic
ACAATGCATGAAATCCTGAA+TGG 0.606726 5:+804684 MsaT024783.1:CDS
CAATTCATGAACTATACCGC+CGG 0.609707 5:-804412 None:intergenic
ACTCCCAAATGGTCTCACTA+AGG 0.610306 5:+803617 MsaT024783.1:CDS
TAATTGGTGGGAAGCCAAAG+AGG 0.613117 5:-802818 None:intergenic
GGAGCACACCACCGCATGGT+AGG 0.614498 5:+802671 MsaT024783.1:CDS
ACGAGTAGGAACATGTGGGG+AGG 0.617756 5:-803436 None:intergenic
ACAGTGAGATTGACTCCGGA+GGG 0.618021 5:+804016 MsaT024783.1:intron
TGTAGATATCCTCATGGATG+TGG 0.622507 5:+802970 MsaT024783.1:CDS
ATGTACAGTGAGATTGACTC+CGG 0.623201 5:+804012 MsaT024783.1:intron
GCAAGTCCAGAATTAACTAG+AGG 0.625489 5:-803819 None:intergenic
AGATGAAGTTAATAGATACA+GGG 0.626082 5:+802246 MsaT024783.1:CDS
TCCAGATGGAATATGGGTAG+TGG 0.628113 5:+803491 MsaT024783.1:CDS
ACACCACCGCATGGTAGGAG+AGG 0.632377 5:+802676 MsaT024783.1:CDS
CCCAGAGCTAGCCTTGCATG+TGG 0.637254 5:-804852 None:intergenic
TGGGATATTCTCTCCGCCGG+CGG 0.644828 5:+804396 MsaT024783.1:CDS
ATTGGTGGGAAGCCAAAGAG+GGG 0.648389 5:-802816 None:intergenic
TGGATGATGTTATATTGGCA+CGG 0.648641 5:-802589 None:intergenic
TTATGAATGTCGGATCTGGA+GGG 0.649910 5:+804787 MsaT024783.1:CDS
AAGCCTCTCCTACCATGCGG+TGG 0.649944 5:-802679 None:intergenic
CAATGGAGCACACCACCGCA+TGG 0.649965 5:+802667 MsaT024783.1:CDS
AGAATTGCACTGATGTAACT+GGG 0.652163 5:+804628 MsaT024783.1:CDS
ATGATGTTCCCGTGGAACGT+TGG 0.653734 5:-803910 None:intergenic
TACAGTGAGATTGACTCCGG+AGG 0.655167 5:+804015 MsaT024783.1:intron
TATATACCATGATGTTCCCG+TGG 0.660275 5:-803918 None:intergenic
CTACGATGGAGCCTTGCAAG+TGG 0.661414 5:+803288 MsaT024783.1:CDS
TGTCTCAATCAAACAACCAG+AGG 0.663405 5:-803595 None:intergenic
TTTGACGAGTAGGAACATGT+GGG 0.667790 5:-803440 None:intergenic
GTCTCAATCAAACAACCAGA+GGG 0.671321 5:-803594 None:intergenic
ATGAAGTTAATAGATACAGG+GGG 0.672309 5:+802248 MsaT024783.1:CDS
AAATTCAGAGCAGAGTGATG+TGG 0.672413 5:+804593 MsaT024783.1:CDS
GGAGTGGGAGGTAACTACGA+TGG 0.675779 5:+803274 MsaT024783.1:CDS
GATGAAGTTAATAGATACAG+GGG 0.679151 5:+802247 MsaT024783.1:CDS
TGAGGGTTCGAAAGAATCCG+TGG 0.680929 5:+802922 MsaT024783.1:CDS
ACTTCCACATACGTTGCATG+TGG 0.681040 5:-802281 None:intergenic
TGGAAGTTCCACTACCGCTG+GGG 0.684408 5:+802297 MsaT024783.1:CDS
ATGCATGAAATCCTGAATGG+CGG 0.684425 5:+804687 MsaT024783.1:CDS
TGTAGAAGTTGATGATCAGG+TGG 0.686691 5:+803779 MsaT024783.1:CDS
AGAAGCAAACCAAATGAACG+TGG 0.686882 5:+801596 MsaT024783.1:CDS
TTGACGAGTAGGAACATGTG+GGG 0.689635 5:-803439 None:intergenic
TTGGTGGGAAGCCAAAGAGG+GGG 0.695051 5:-802815 None:intergenic
ATACATGAAGTATTTCCCAA+GGG 0.695847 5:+802868 MsaT024783.1:CDS
AGCATTAATCATGACCACCA+CGG 0.701180 5:-802939 None:intergenic
GGTACCTGGAAACGGACCGG+AGG 0.704720 5:+804126 MsaT024783.1:CDS
CACTTTGATCAGGAACACTG+TGG 0.708628 5:+804893 MsaT024783.1:CDS
AGCAAACCAAATGAACGTGG+AGG 0.709887 5:+801599 MsaT024783.1:CDS
AAGACCCTTAATCTGTACGG+AGG 0.717527 5:-802717 None:intergenic
TTCATGAACTATACCGCCGG+CGG 0.721861 5:-804409 None:intergenic
GTCATGTGACATTTCCCCAG+CGG 0.729104 5:-802311 None:intergenic
AATGACTCACCACATCCATG+AGG 0.740230 5:-802979 None:intergenic
GGGTTCGAAAGAATCCGTGG+TGG 0.741743 5:+802925 MsaT024783.1:CDS
TGAAGTTAATAGATACAGGG+GGG 0.744765 5:+802249 MsaT024783.1:CDS
TGAAAGCCTCTCCTACCATG+CGG 0.748941 5:-802682 None:intergenic
CCTGATCAAAGTGTTAACAG+TGG 0.772385 5:-804883 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 801528 804953 801528 ID=MsaG024783
Chr5 mRNA 801528 804953 801528 ID=MsaT024783.1;Parent=MsaG024783
Chr5 exon 801528 801712 801528 ID=MsaT024783.1.exon1;Parent=MsaT024783.1
Chr5 CDS 801528 801712 801528 ID=cds.MsaT024783.1;Parent=MsaT024783.1
Chr5 exon 801834 801951 801834 ID=MsaT024783.1.exon2;Parent=MsaT024783.1
Chr5 CDS 801834 801951 801834 ID=cds.MsaT024783.1;Parent=MsaT024783.1
Chr5 exon 802190 802375 802190 ID=MsaT024783.1.exon3;Parent=MsaT024783.1
Chr5 CDS 802190 802375 802190 ID=cds.MsaT024783.1;Parent=MsaT024783.1
Chr5 exon 802554 802991 802554 ID=MsaT024783.1.exon4;Parent=MsaT024783.1
Chr5 CDS 802554 802991 802554 ID=cds.MsaT024783.1;Parent=MsaT024783.1
Chr5 exon 803208 803309 803208 ID=MsaT024783.1.exon5;Parent=MsaT024783.1
Chr5 CDS 803208 803309 803208 ID=cds.MsaT024783.1;Parent=MsaT024783.1
Chr5 exon 803414 803638 803414 ID=MsaT024783.1.exon6;Parent=MsaT024783.1
Chr5 CDS 803414 803638 803414 ID=cds.MsaT024783.1;Parent=MsaT024783.1
Chr5 exon 803762 803933 803762 ID=MsaT024783.1.exon7;Parent=MsaT024783.1
Chr5 CDS 803762 803933 803762 ID=cds.MsaT024783.1;Parent=MsaT024783.1
Chr5 exon 804020 804297 804020 ID=MsaT024783.1.exon8;Parent=MsaT024783.1
Chr5 CDS 804020 804297 804020 ID=cds.MsaT024783.1;Parent=MsaT024783.1
Chr5 exon 804396 804491 804396 ID=MsaT024783.1.exon9;Parent=MsaT024783.1
Chr5 CDS 804396 804491 804396 ID=cds.MsaT024783.1;Parent=MsaT024783.1
Chr5 exon 804588 804953 804588 ID=MsaT024783.1.exon10;Parent=MsaT024783.1
Chr5 CDS 804588 804953 804588 ID=cds.MsaT024783.1;Parent=MsaT024783.1
Gene Sequence

>MsaT024783.1

ATGGTGAATACTCCACATCAAAATCACAGCAAGAACATGTATCAGAATAGGATGACAAGAACAAGAGAAGAAGCAAACCAAATGAACGTGGAGGCTCCTTCAAGTGATGACCAGCAACCCAACCAACGTCCCAGAAAAAGGACCTATCGCCGCCACACACAGCAACAAATTGATGAAATGGATACTTTCTTCAAGCAGTGTCCTAACCCTAATGATGCTCAGAGAAGAGAGCTGAGCCTTCGGACCGGGTTAGACCCAACGCAAATCAAGTTTTGGTTTCAGAACAGGCGCACTTCACTCAAGGTTCAAACTGATAGGGAAGAGAATGAGCTATTAAAGATTGAGAATGAAAAACTTCGAGATGAAGTTAATAGATACAGGGGGGCAATTGTTACCACATGCAACGTATGTGGAAGTTCCACTACCGCTGGGGAAATGTCACATGACGATCAGCAGCTAAGACTGGAGAATGCTCTCTTAAGGAAAGAGCTTGAAAGGTATATGGGAGAGACGCCTGCAGATTCCCGTGCCAATATAACATCATCCAACAATAGCACTCATGTTGTTTCACGCTCTGCTGATTTTGGAGTTGCTGGTGGTAACAATGGAGCACACCACCGCATGGTAGGAGAGGCTTTCACTGTTGGTGGCTCCTCCGTACAGATTAAGGGTCTTAATGAGAAGCAAAGGGTTGTAGAGCTTGCTGTTGTTGGAATGGCTGAACTGACCAAACTGGCTAGGACATATGGACCCCCTCTTTGGCTTCCCACCAATTATGTCACTGAGATTCTCAATGGAGAGGAATACATGAAGTATTTCCCAAGGGCTAATGGTCCCAACACATTGGGATTAAAGCTTGAGGGTTCGAAAGAATCCGTGGTGGTCATGATTAATGCTCCTGATCTTGTAGATATCCTCATGGATGTGAATCAATGGTCAAATATGTTTTGCGGCATTGTTTCTAAAGCAGCAACACTTGAAGTCCTTTCAACTGGAGTGGGAGGTAACTACGATGGAGCCTTGCAAGTGATGACAGCTGAATTTCAAGTCCCCTCCCCACATGTTCCTACTCGTCAAAACCATTTTGTGAGATACTGTAAACTGCATCCAGATGGAATATGGGTAGTGGCTGATGTGTCCTTGCATCTGTTAAATGCAACATCTGCTAGTAGTAGTAGTAGTAGTACTGCTTCAAGAACCAACAGAAGACCCTCTGGTTGTTTGATTGAGACACTCCCAAATGGTCTCACTAAGGTTACATGGATTGAAAATGTAGAAGTTGATGATCAGGTGGTGCAAAATATATATAAACCTCTAGTTAATTCTGGACTTGCTTTTGGAGCTAAACGCTGGGTAGCTACATTACATCGACAATCTGATCGTCTTGTTTTTAAAACGGCCACCAACGTTCCACGGGAACATCATGTGAGATTGACTCCGGAGGGAAAGAAAAGTATATTGAATCTTGCGGAAAGGTTGGTAGCTAGCTTTAGTACAAGTATTGGTTCTTCTACAACACATGCTTGGACAAAGGTACCTGGAAACGGACCGGAGGTTGTAATGGTCATGACGAAAAGATATATCGATGAATCGAGCATTGACAAACCCGTCAGTGTTGTGCTAAGTGCTGCTACTTCTTTTTGGCTTCCAGTTCCTCCAAGGAGGGTGTTTGATTTTCTTCGAGATCAAAACACAAGAAAACATTGGGATATTCTCTCCGCCGGCGGTATAGTTCATGAATTGGCTCACATTTCAAATGGTCGTGATTCTGGCAACTATGTCTCCTTATTTCGTATCACTAGTGAAAATTCAGAGCAGAGTGATGTGGTAGTACTGCAAGAGAATTGCACTGATGTAACTGGGTCATATGTAGTATATGCGCCTGTGCAAATACCTACAATGCATGAAATCCTGAATGGCGGCGACTCAAGTCGTCTTACTCTGCTTCCTTCCGGATTCGCTATTTTTCCAGATGGGTGTATAACAAATGCAGGACCAATTATGAATGTCGGATCTGGAGGGTCTCTTGTCACAGTTGCATTTCAGATTATAGTTGATTCTATTCCACATGCAAGGCTAGCTCTGGGTTCAATCACCACTGTTAACACTTTGATCAGGAACACTGTGGAAAGGATTAAAACTGCAGTGATGCCTAATGGCATCTAA

Protein sequence

>MsaT024783.1

MVNTPHQNHSKNMYQNRMTRTREEANQMNVEAPSSDDQQPNQRPRKRTYRRHTQQQIDEMDTFFKQCPNPNDAQRRELSLRTGLDPTQIKFWFQNRRTSLKVQTDREENELLKIENEKLRDEVNRYRGAIVTTCNVCGSSTTAGEMSHDDQQLRLENALLRKELERYMGETPADSRANITSSNNSTHVVSRSADFGVAGGNNGAHHRMVGEAFTVGGSSVQIKGLNEKQRVVELAVVGMAELTKLARTYGPPLWLPTNYVTEILNGEEYMKYFPRANGPNTLGLKLEGSKESVVVMINAPDLVDILMDVNQWSNMFCGIVSKAATLEVLSTGVGGNYDGALQVMTAEFQVPSPHVPTRQNHFVRYCKLHPDGIWVVADVSLHLLNATSASSSSSSTASRTNRRPSGCLIETLPNGLTKVTWIENVEVDDQVVQNIYKPLVNSGLAFGAKRWVATLHRQSDRLVFKTATNVPREHHVRLTPEGKKSILNLAERLVASFSTSIGSSTTHAWTKVPGNGPEVVMVMTKRYIDESSIDKPVSVVLSAATSFWLPVPPRRVFDFLRDQNTRKHWDILSAGGIVHELAHISNGRDSGNYVSLFRITSENSEQSDVVVLQENCTDVTGSYVVYAPVQIPTMHEILNGGDSSRLTLLPSGFAIFPDGCITNAGPIMNVGSGGSLVTVAFQIIVDSIPHARLALGSITTVNTLIRNTVERIKTAVMPNGI*