AlfalfaGEDB | MsaG024841

M. sativa ssp. caerulea / MsaG024841

KEGG: -
GO: -
PFAM: PF13302.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024841	XP_003610737.1	93.684	190	12	0	1	190	1	190	2.70e-125	361

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024841	sp\|P05332\|YP20_BACLI	32.941	170	103	3	21	184	8	172	2.88e-18	81.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024841	tr\|G7K3P2\|G7K3P2_MEDTR	93.684	190	12	0	1	190	1	190	1.29e-125	361

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TFs/TRs:

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Gene ID	Type	Classification
MsaG024841	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024841	MtrunA17_Chr5g0394621	93.684	190	12	0	1	190	1	190	2.48e-129	361
MsaG024841	MtrunA17_Chr5g0394631	77.222	180	41	0	1	180	1	180	2.36e-96	285
MsaG024841	MtrunA17_Chr5g0394631	73.196	194	42	5	1	190	214	401	1.49e-89	268
MsaG024841	MtrunA17_Chr1g0204951	64.583	192	64	2	1	190	1	190	1.73e-85	250
MsaG024841	MtrunA17_Chr1g0204971	60.417	192	72	2	1	190	1	190	1.87e-79	234
MsaG024841	MtrunA17_Chr7g0273661	40.764	157	90	1	16	172	3	156	1.14e-41	137
MsaG024841	MtrunA17_Chr7g0223361	39.181	171	100	2	17	187	4	170	9.29e-37	125
MsaG024841	MtrunA17_Chr7g0223351	39.286	168	97	3	20	187	7	169	3.16e-35	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG024841	AT2G32030.1	51.786	168	74	3	21	187	24	185	1.66e-58	182
MsaG024841	AT2G32020.1	51.190	168	75	2	21	187	19	180	2.46e-54	171
MsaG024841	AT3G22560.1	38.235	170	100	2	20	187	6	172	2.52e-35	122

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Find 49 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGGTTTCCAAAAGGA+GGG	0.657724	5:-1380139	MsaT024841.1:CDS
AACTTGTTTCACAACACATG+TGG	0.607173	5:+1380252	None:intergenic
AAGGGCTCGAAGTGTGATTT+GGG	0.403990	5:+1380546	None:intergenic
AAGTGGCCAAATTCTGCTCT+TGG	0.423997	5:-1380477	MsaT024841.1:CDS
AAGTTCTGCACATTTGTTCC+TGG	0.375848	5:+1380315	None:intergenic
ACCTTGATGATCTCATGGTG+TGG	0.606125	5:-1380513	MsaT024841.1:CDS
AGGAAATATTTGTTCATGAA+AGG	0.480337	5:-1380109	MsaT024841.1:CDS
AGGAACAAATGTGCAGAACT+TGG	0.475881	5:-1380313	MsaT024841.1:CDS
AGTGGCCAAATTCTGCTCTT+GGG	0.474265	5:-1380476	MsaT024841.1:CDS
ATATAGCTACCAAGTTTCTA+TGG	0.402105	5:-1380411	MsaT024841.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	1380054	1380626	1380054	ID=MsaG024841
Chr5	mRNA	1380054	1380626	1380054	ID=MsaT024841.1;Parent=MsaG024841
Chr5	exon	1380054	1380626	1380054	ID=MsaT024841.1.exon1;Parent=MsaT024841.1
Chr5	CDS	1380054	1380626	1380054	ID=cds.MsaT024841.1;Parent=MsaT024841.1

Gene Sequence

>MsaT024841.1

ATGGAGAGAACTTCTATTTCTTTCGAACCACGTGCCAAAGAAGAGAGAATTGATTTAACCCAAATCACACTTCGAGCCCTTCAACTTTCTGACCTTGATGATCTCATGGTGTGGACAACTGATGAAAAAGTGGCCAAATTCTGCTCTTGGGAACTCTACACCAGCAAGGATGATGGCATCAACTTCATTGAAAATATAGCTACCAAGTTTCTATGGTGCAAAGCAATATGCATCAATGATCGTGCAATTGGGTGTGTTTCTCTATCCTCAAGTTCACCTGGTGATAAATCCAGGAACAAATGTGCAGAACTTGGCTATGTTCTAGGCTCTAAATATTGGGGTAAAGGGGTTGCCACATGTGTTGTGAAACAAGTTGTTAAGGTTGCATTCTGTGAGTTGACTTACTTGGAAAGGCTTGAAGCTTTAGTTGATGTGGAAAATGCTGGGTCTCAAAGAGTGCTGGAGAAAGCTGGTTTCCAAAAGGAGGGAGTTCTAAGGAAATATTTGTTCATGAAAGGAAAAAGTAGAGATATGATCATGTCCAGTGTTCTTTCTACTGATCTCCAACTATAA

Protein sequence

>MsaT024841.1

MERTSISFEPRAKEERIDLTQITLRALQLSDLDDLMVWTTDEKVAKFCSWELYTSKDDGINFIENIATKFLWCKAICINDRAIGCVSLSSSSPGDKSRNKCAELGYVLGSKYWGKGVATCVVKQVVKVAFCELTYLERLEALVDVENAGSQRVLEKAGFQKEGVLRKYLFMKGKSRDMIMSSVLSTDLQL*