Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG024847 | XP_003610744.2 | 97.086 | 755 | 22 | 0 | 5 | 759 | 24 | 778 | 0.0 | 1511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG024847 | sp|Q9LUI3|TSO1_ARATH | 43.646 | 779 | 301 | 32 | 5 | 755 | 23 | 691 | 7.51e-156 | 472 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG024847 | tr|G7K3P9|G7K3P9_MEDTR | 97.086 | 755 | 22 | 0 | 5 | 759 | 24 | 778 | 0.0 | 1511 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG024847 | TF | CPP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG024847 | MtrunA17_Chr5g0394661 | 97.086 | 755 | 22 | 0 | 5 | 759 | 24 | 778 | 0.0 | 1511 |
| MsaG024847 | MtrunA17_Chr1g0205031 | 33.385 | 647 | 279 | 19 | 5 | 613 | 17 | 549 | 3.17e-76 | 257 |
| MsaG024847 | MtrunA17_Chr1g0149101 | 29.190 | 877 | 434 | 33 | 3 | 756 | 33 | 845 | 1.27e-67 | 239 |
| MsaG024847 | MtrunA17_Chr4g0030281 | 90.625 | 96 | 9 | 0 | 132 | 227 | 74 | 169 | 1.41e-50 | 188 |
| MsaG024847 | MtrunA17_Chr6g0485811 | 44.079 | 152 | 82 | 2 | 449 | 598 | 106 | 256 | 1.68e-30 | 127 |
| MsaG024847 | MtrunA17_Chr8g0390351 | 41.447 | 152 | 83 | 2 | 452 | 598 | 61 | 211 | 2.03e-29 | 124 |
| MsaG024847 | MtrunA17_Chr3g0139951 | 48.800 | 125 | 60 | 4 | 469 | 592 | 148 | 269 | 1.22e-26 | 113 |
| MsaG024847 | MtrunA17_Chr1g0205001 | 58.333 | 60 | 25 | 0 | 457 | 516 | 161 | 220 | 6.95e-16 | 77.8 |
| MsaG024847 | MtrunA17_Chr1g0205011 | 37.500 | 160 | 77 | 5 | 297 | 454 | 3 | 141 | 6.94e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG024847 | AT3G22780.1 | 43.646 | 779 | 301 | 32 | 5 | 755 | 23 | 691 | 7.63e-157 | 472 |
| MsaG024847 | AT4G14770.3 | 44.231 | 780 | 281 | 30 | 3 | 756 | 1 | 652 | 2.80e-152 | 459 |
| MsaG024847 | AT4G14770.2 | 44.344 | 778 | 279 | 30 | 5 | 756 | 2 | 651 | 7.53e-152 | 457 |
| MsaG024847 | AT4G14770.1 | 44.344 | 778 | 279 | 31 | 5 | 756 | 22 | 671 | 7.84e-152 | 458 |
| MsaG024847 | AT3G22760.1 | 40.078 | 771 | 265 | 31 | 3 | 758 | 20 | 608 | 2.38e-128 | 395 |
| MsaG024847 | AT3G22760.2 | 43.932 | 585 | 209 | 24 | 188 | 758 | 6 | 485 | 2.54e-116 | 360 |
| MsaG024847 | AT3G04850.1 | 34.584 | 613 | 321 | 20 | 5 | 592 | 19 | 576 | 1.18e-78 | 265 |
| MsaG024847 | AT5G25790.1 | 46.923 | 130 | 68 | 1 | 469 | 598 | 95 | 223 | 7.12e-30 | 124 |
| MsaG024847 | AT5G25790.2 | 46.923 | 130 | 68 | 1 | 469 | 598 | 95 | 223 | 8.43e-30 | 124 |
| MsaG024847 | AT2G20110.3 | 35.526 | 228 | 124 | 5 | 382 | 592 | 20 | 241 | 1.31e-29 | 124 |
| MsaG024847 | AT5G25790.3 | 48.462 | 130 | 62 | 2 | 469 | 598 | 95 | 219 | 1.50e-29 | 123 |
| MsaG024847 | AT2G20110.1 | 35.526 | 228 | 124 | 5 | 382 | 592 | 20 | 241 | 1.72e-29 | 124 |
| MsaG024847 | AT2G20110.2 | 35.526 | 228 | 124 | 5 | 382 | 592 | 20 | 241 | 1.77e-29 | 124 |
| MsaG024847 | AT4G29000.1 | 45.385 | 130 | 70 | 1 | 469 | 598 | 132 | 260 | 4.45e-29 | 123 |
| MsaG024847 | AT3G16160.1 | 34.979 | 243 | 129 | 9 | 469 | 699 | 66 | 291 | 3.40e-23 | 102 |
Find 165 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCACTGGTTCTGGATATT+TGG | 0.157115 | 5:-1423837 | MsaT024847.1:CDS |
| TCACCACCACGGAGAATTTC+TGG | 0.214113 | 5:+1423737 | None:intergenic |
| GATTGAGACCAAAGAGAATT+TGG | 0.224349 | 5:+1423794 | None:intergenic |
| GCAGATTTAACTGGCTTTAT+AGG | 0.232000 | 5:+1427312 | None:intergenic |
| TATCTTCTAACCCCAGTTTC+AGG | 0.233911 | 5:+1424582 | None:intergenic |
| AATTAACATATTAGCAGAAT+TGG | 0.258385 | 5:+1426651 | None:intergenic |
| CAAATTGAAAATTTGACTTC+TGG | 0.261230 | 5:-1425595 | MsaT024847.1:CDS |
| CGCTTTCGCGTCTTAATTCC+AGG | 0.270053 | 5:-1426990 | MsaT024847.1:CDS |
| AAGATTTACATGGTTGATTC+AGG | 0.271475 | 5:-1426523 | MsaT024847.1:CDS |
| TGGCAATTCAAATGAGAAAA+TGG | 0.271811 | 5:-1426395 | MsaT024847.1:CDS |
| CAACACCTTTACGGCTTTCC+AGG | 0.273435 | 5:-1424003 | MsaT024847.1:intron |
| TTTGCCTTTGTGATCCTTTA+CGG | 0.280925 | 5:+1425618 | None:intergenic |
| TCAGCACTTCGGATGACTTT+AGG | 0.288928 | 5:+1424612 | None:intergenic |
| GCTGACTCTGTGCCTGAAAC+TGG | 0.291755 | 5:-1424594 | MsaT024847.1:CDS |
| GTTACAACCCTCACTGGTTC+TGG | 0.305204 | 5:-1423845 | MsaT024847.1:CDS |
| TTGCGAAACCAAATTCTCTT+TGG | 0.309179 | 5:-1423802 | MsaT024847.1:CDS |
| TGTACAGGTTCTGCTTCTAT+AGG | 0.312813 | 5:-1424142 | MsaT024847.1:intron |
| CCGAGAGATGCTGATGTTCT+TGG | 0.317181 | 5:+1425524 | None:intergenic |
| TCTTTAGCCTTTGATTCTTC+CGG | 0.320531 | 5:+1427069 | None:intergenic |
| GAAATATTGTGAATGCTATC+AGG | 0.323011 | 5:-1424413 | MsaT024847.1:intron |
| TTTGAAGAACAGTATCTTCA+TGG | 0.328335 | 5:+1424676 | None:intergenic |
| ATTTCTGGCATTTCATCATC+TGG | 0.343435 | 5:+1423752 | None:intergenic |
| GTACAGGTTCTGCTTCTATA+GGG | 0.354552 | 5:-1424141 | MsaT024847.1:intron |
| CCCTTCACATCTGCAGCTAA+TGG | 0.355774 | 5:+1424297 | None:intergenic |
| AGCATTCACAATATTTCTTT+AGG | 0.370111 | 5:+1424419 | None:intergenic |
| TCCTGGTACATTGTTGTAGC+AGG | 0.370487 | 5:+1426557 | None:intergenic |
| CTGGGGTCTCAACACCTTTA+CGG | 0.372102 | 5:-1424012 | MsaT024847.1:CDS |
| TGATGAGGATAACACACTTT+TGG | 0.374598 | 5:-1426821 | MsaT024847.1:CDS |
| AATATCATCTGAAAGAGAAT+TGG | 0.381101 | 5:-1425488 | MsaT024847.1:CDS |
| TTCGCAAAGATGCATGTTGC+CGG | 0.388684 | 5:-1425671 | MsaT024847.1:CDS |
| ATTAACATATTAGCAGAATT+GGG | 0.391197 | 5:+1426652 | None:intergenic |
| CTCTTCGCCTAACTGTGAAA+TGG | 0.395894 | 5:-1423663 | MsaT024847.1:CDS |
| GTTGAGACCCCAGCAGAATC+AGG | 0.402631 | 5:+1424022 | None:intergenic |
| GTAATGTGAGCAGATTTAAC+TGG | 0.404452 | 5:+1427303 | None:intergenic |
| TGGCTTTCCCTTTGATGAAA+AGG | 0.412518 | 5:+1423880 | None:intergenic |
| CTGTCACACACCGTGGCATT+CGG | 0.418651 | 5:-1425837 | MsaT024847.1:CDS |
| AATAAATTGTACTCAAATGA+AGG | 0.424880 | 5:-1427030 | MsaT024847.1:CDS |
| GTGAAAGTTCAGACTGTGAT+TGG | 0.429225 | 5:-1426687 | MsaT024847.1:CDS |
| GGCTTTCCCTTTGATGAAAA+GGG | 0.433636 | 5:+1423881 | None:intergenic |
| TTGTTGATATAGTTGAATAC+TGG | 0.434917 | 5:+1427342 | None:intergenic |
| CATCCCTCAATTTCTCCGAC+TGG | 0.435335 | 5:+1425259 | None:intergenic |
| TCTTCGCCTAACTGTGAAAT+GGG | 0.439819 | 5:-1423662 | MsaT024847.1:CDS |
| GGTTATGATCCTACACTTTG+TGG | 0.443504 | 5:-1426844 | MsaT024847.1:CDS |
| ACAAAATCGCTGAGTCGTAT+AGG | 0.443839 | 5:+1426583 | None:intergenic |
| TCAGTAGCCATGTAAGCTAT+AGG | 0.446368 | 5:+1425421 | None:intergenic |
| GCACAGGACAATCTTGCTAA+TGG | 0.451745 | 5:-1426430 | MsaT024847.1:CDS |
| TCTGCTTCTATAGGGATAGA+AGG | 0.452212 | 5:-1424133 | MsaT024847.1:CDS |
| AATTGGACCCATCCGACAAT+GGG | 0.452280 | 5:-1425471 | MsaT024847.1:CDS |
| GAAGGGTGCAAGAACGCATT+TGG | 0.452291 | 5:-1424280 | MsaT024847.1:CDS |
| GCAATGATGTAGAGCTGGTC+AGG | 0.456666 | 5:+1425560 | None:intergenic |
| GAAGATCATCCTGATTCTGC+TGG | 0.460122 | 5:-1424031 | MsaT024847.1:CDS |
| AATCTTCTGATCATCATTCC+TGG | 0.460270 | 5:+1426540 | None:intergenic |
| CTGACTCTGTGCCTGAAACT+GGG | 0.462110 | 5:-1424593 | MsaT024847.1:CDS |
| AGAGCCAGTCGGAGAAATTG+AGG | 0.468017 | 5:-1425263 | MsaT024847.1:CDS |
| CAGTATAATTGTGGTAGTCC+TGG | 0.468942 | 5:-1426865 | MsaT024847.1:CDS |
| AGCACTTTCATGCAATTCCC+TGG | 0.472085 | 5:+1426972 | None:intergenic |
| CATAGAACCTTGTTCCTGTC+AGG | 0.475825 | 5:-1424718 | MsaT024847.1:CDS |
| AGATGCATGTTGCCGGGTAT+CGG | 0.479372 | 5:-1425664 | MsaT024847.1:CDS |
| GCTAATGGTTCTTCGATGAC+TGG | 0.480583 | 5:-1426415 | MsaT024847.1:CDS |
| CTTCATCTCCAAATGGCAAA+AGG | 0.482506 | 5:-1423688 | MsaT024847.1:CDS |
| TAGCCATGTAAGCTATAGGC+TGG | 0.482786 | 5:+1425425 | None:intergenic |
| GAGGCTGAATTGCATCTTCA+AGG | 0.483131 | 5:-1426733 | MsaT024847.1:CDS |
| CCCTTTGATGAAAAGGGCAT+CGG | 0.485976 | 5:+1423887 | None:intergenic |
| CTCCTAGTCGCAGAGGTGGC+AGG | 0.487950 | 5:-1423634 | MsaT024847.1:CDS |
| ATCAAAACTTCATCTCCAAA+TGG | 0.504677 | 5:-1423695 | MsaT024847.1:CDS |
| GTCCGTTGCGGCTACTAGCT+CGG | 0.508571 | 5:+1426462 | None:intergenic |
| GGTCTGATGCAGAAATCATC+AGG | 0.508813 | 5:-1426610 | MsaT024847.1:CDS |
| TAGCCTTTGATTCTTCCGGC+TGG | 0.510192 | 5:+1427073 | None:intergenic |
| AGAACAGTATCTTCATGGAT+AGG | 0.511164 | 5:+1424681 | None:intergenic |
| CAAGAACGCATTTGGTAGAA+AGG | 0.511592 | 5:-1424272 | MsaT024847.1:CDS |
| GAGTAGCAATGATGTAGAGC+TGG | 0.514316 | 5:+1425555 | None:intergenic |
| TTTGTTGAAGCATTCCTGAC+AGG | 0.514321 | 5:+1424704 | None:intergenic |
| TCCCCAGCCTATAGCTTACA+TGG | 0.518437 | 5:-1425428 | MsaT024847.1:CDS |
| AAATGAGAAAATGGATAATG+AGG | 0.521298 | 5:-1426386 | MsaT024847.1:intron |
| GGCTGAACCCCATTGTCGGA+TGG | 0.521823 | 5:+1425463 | None:intergenic |
| ATAAATTGTACTCAAATGAA+GGG | 0.524572 | 5:-1427029 | MsaT024847.1:CDS |
| CCCTGCTACAACAATGTACC+AGG | 0.525552 | 5:-1426558 | MsaT024847.1:CDS |
| GACGATCCCATTTCACAGTT+AGG | 0.526872 | 5:+1423656 | None:intergenic |
| ATCGGATGATGCATATGCTC+AGG | 0.530983 | 5:-1426779 | MsaT024847.1:CDS |
| TGCGATCTTCCTTCGCACAC+TGG | 0.531010 | 5:+1425789 | None:intergenic |
| AAGATCATCCTGATTCTGCT+GGG | 0.531460 | 5:-1424030 | MsaT024847.1:CDS |
| AGGGTTGTAACAAAAGATCT+TGG | 0.531631 | 5:+1423857 | None:intergenic |
| GAATGCACTTGCTACCGTAA+AGG | 0.534952 | 5:-1425632 | MsaT024847.1:CDS |
| CCTGGTACATTGTTGTAGCA+GGG | 0.537895 | 5:+1426558 | None:intergenic |
| GAATTAAGACGCGAAAGCGT+AGG | 0.538425 | 5:+1426994 | None:intergenic |
| GCTTCAGCACGCCATAAAAG+AGG | 0.539310 | 5:-1424466 | MsaT024847.1:CDS |
| GCTGAACCCCATTGTCGGAT+GGG | 0.544431 | 5:+1425464 | None:intergenic |
| AGTAGGCTGAACCCCATTGT+CGG | 0.545258 | 5:+1425459 | None:intergenic |
| TAGGAATCTAGATTCCTTGA+GGG | 0.545296 | 5:+1427215 | None:intergenic |
| AACGCATTTGGTAGAAAGGA+TGG | 0.546612 | 5:-1424268 | MsaT024847.1:intron |
| GCGCTGTCTTGACTTTGAGA+TGG | 0.547351 | 5:-1425812 | MsaT024847.1:CDS |
| AGCCATGTAAGCTATAGGCT+GGG | 0.550019 | 5:+1425426 | None:intergenic |
| GCCTCATGTCACCTCCCTCA+AGG | 0.551599 | 5:-1427229 | MsaT024847.1:CDS |
| TCGCAAAGATGCATGTTGCC+GGG | 0.554525 | 5:-1425670 | MsaT024847.1:CDS |
| AACGGACACTGACCGTGCAC+AGG | 0.555108 | 5:-1426446 | MsaT024847.1:CDS |
| AACTAGTCAGATCGATCGAA+AGG | 0.555727 | 5:-1426710 | MsaT024847.1:CDS |
| TAAGGGTGATGTGTGAGAGA+AGG | 0.557637 | 5:+1423581 | None:intergenic |
| GCCATGTAAGCTATAGGCTG+GGG | 0.557913 | 5:+1425427 | None:intergenic |
| GAATTGGACCCATCCGACAA+TGG | 0.560509 | 5:-1425472 | MsaT024847.1:CDS |
| AGCATATGCATCATCCGATA+CGG | 0.562944 | 5:+1426783 | None:intergenic |
| TCCATTAGCTGCAGATGTGA+AGG | 0.563119 | 5:-1424298 | MsaT024847.1:CDS |
| TGACTCTGTGCCTGAAACTG+GGG | 0.566690 | 5:-1424592 | MsaT024847.1:intron |
| GAGCCAGTCGGAGAAATTGA+GGG | 0.568531 | 5:-1425262 | MsaT024847.1:CDS |
| TGAAAGTTCAGACTGTGATT+GGG | 0.569942 | 5:-1426686 | MsaT024847.1:CDS |
| GTTGTAACAAAAGATCTTGG+TGG | 0.570269 | 5:+1423860 | None:intergenic |
| TCAAACCTGGAAAGCCGTAA+AGG | 0.570767 | 5:+1423998 | None:intergenic |
| TAACCAGCCGGAAGAATCAA+AGG | 0.570940 | 5:-1427076 | MsaT024847.1:CDS |
| CTCGAGTTTATTACCTGCGT+AGG | 0.579058 | 5:+1427196 | None:intergenic |
| TGAGGCGACGCGAAAACAGA+CGG | 0.581467 | 5:+1427246 | None:intergenic |
| TCCTTGAGGGAGGTGACATG+AGG | 0.583987 | 5:+1427228 | None:intergenic |
| AGACTGTGGTGTACTAGAGT+TGG | 0.586929 | 5:+1425750 | None:intergenic |
| AGAAACTAGTGACAAGGGTG+TGG | 0.586951 | 5:-1424092 | MsaT024847.1:CDS |
| TCACACACCGTGGCATTCGG+AGG | 0.587057 | 5:-1425834 | MsaT024847.1:CDS |
| GCTTTCGCGTCTTAATTCCA+GGG | 0.588910 | 5:-1426989 | MsaT024847.1:CDS |
| CAATTATACTGTAATGATTG+TGG | 0.589570 | 5:+1426877 | None:intergenic |
| CCAAGAACATCAGCATCTCT+CGG | 0.590668 | 5:-1425524 | MsaT024847.1:CDS |
| ATTGTCTGGTGAAGCCGTAT+CGG | 0.592735 | 5:-1426797 | MsaT024847.1:CDS |
| AAGCATTCCTGACAGGAACA+AGG | 0.596059 | 5:+1424711 | None:intergenic |
| AACTAGTGACAAGGGTGTGG+AGG | 0.596480 | 5:-1424089 | MsaT024847.1:CDS |
| GAATTCATTATTTCAGACTG+TGG | 0.599589 | 5:+1425736 | None:intergenic |
| GCTGAGCAACTGATTTCAGT+AGG | 0.602495 | 5:-1426952 | MsaT024847.1:CDS |
| CTGGTACATTGTTGTAGCAG+GGG | 0.602762 | 5:+1426559 | None:intergenic |
| TTCAAGTGTAAACCGATACC+CGG | 0.605302 | 5:+1425652 | None:intergenic |
| TGATGATCAGAAGATTTACA+TGG | 0.605691 | 5:-1426533 | MsaT024847.1:CDS |
| TTGAGATGGCCAGTGTGCGA+AGG | 0.607118 | 5:-1425798 | MsaT024847.1:CDS |
| TAGCAAGATTGTCCTGTGCA+CGG | 0.611369 | 5:+1426434 | None:intergenic |
| CTTTAGGAGCAAATGCAAGA+GGG | 0.612218 | 5:+1424628 | None:intergenic |
| ACTAGTCAGATCGATCGAAA+GGG | 0.612598 | 5:-1426709 | MsaT024847.1:CDS |
| AGGAATCTAGATTCCTACGC+AGG | 0.613226 | 5:-1427209 | MsaT024847.1:intron |
| CAAATATCCAGAACCAGTGA+GGG | 0.617109 | 5:+1423838 | None:intergenic |
| TCGTCTCCTAGTCGCAGAGG+TGG | 0.618263 | 5:-1423638 | MsaT024847.1:CDS |
| TGGTACATTGTTGTAGCAGG+GGG | 0.619846 | 5:+1426560 | None:intergenic |
| ACTTTAGGAGCAAATGCAAG+AGG | 0.620252 | 5:+1424627 | None:intergenic |
| CCATTAGCTGCAGATGTGAA+GGG | 0.621617 | 5:-1424297 | MsaT024847.1:CDS |
| TTCCGAGCTAGTAGCCGCAA+CGG | 0.624512 | 5:-1426464 | MsaT024847.1:CDS |
| AGATCATCCTGATTCTGCTG+GGG | 0.627174 | 5:-1424029 | MsaT024847.1:CDS |
| CCAAATATCCAGAACCAGTG+AGG | 0.627791 | 5:+1423837 | None:intergenic |
| TTCCTGCCACCTCTGCGACT+AGG | 0.628203 | 5:+1423632 | None:intergenic |
| GGCTGGGGACAATCTTCAGT+AGG | 0.630869 | 5:+1425442 | None:intergenic |
| TAAATTGTACTCAAATGAAG+GGG | 0.630996 | 5:-1427028 | MsaT024847.1:CDS |
| GTAGGAATCTAGATTCCTTG+AGG | 0.640124 | 5:+1427214 | None:intergenic |
| CAATCATTACAGTATAATTG+TGG | 0.641974 | 5:-1426874 | MsaT024847.1:CDS |
| AGAAACAGAAACTAGTGACA+AGG | 0.642503 | 5:-1424098 | MsaT024847.1:CDS |
| CAGGCACAGAGTCAGCACTT+CGG | 0.643193 | 5:+1424601 | None:intergenic |
| TTTATCTAGACATAACCAGC+CGG | 0.647804 | 5:-1427088 | MsaT024847.1:intron |
| TGCACGGTCAGTGTCCGTTG+CGG | 0.648114 | 5:+1426450 | None:intergenic |
| AGTTCAGACTGTGATTGGGA+TGG | 0.649288 | 5:-1426682 | MsaT024847.1:CDS |
| GAAACAGAAACTAGTGACAA+GGG | 0.650767 | 5:-1424097 | MsaT024847.1:CDS |
| TGTGTGAGAGAAGGAAACGA+TGG | 0.651131 | 5:+1423590 | None:intergenic |
| GAATCTAGATTCCTTGAGGG+AGG | 0.652274 | 5:+1427218 | None:intergenic |
| TCCTACACTTTGTGGTGATG+AGG | 0.652902 | 5:-1426836 | MsaT024847.1:CDS |
| GATGATGCATATGCTCAGGA+AGG | 0.661427 | 5:-1426775 | MsaT024847.1:CDS |
| GACAGCGCCTCCGAATGCCA+CGG | 0.667054 | 5:+1425827 | None:intergenic |
| CAAAGTGTAGGATCATAACC+AGG | 0.669535 | 5:+1426847 | None:intergenic |
| CTTGTTTCTGTCACACACCG+TGG | 0.670686 | 5:-1425844 | MsaT024847.1:CDS |
| AGGCGTAAGTCAGAGCCAGT+CGG | 0.672763 | 5:-1425274 | MsaT024847.1:CDS |
| TCCTCATCACCACAAAGTGT+AGG | 0.678275 | 5:+1426835 | None:intergenic |
| GGATCGTCTCCTAGTCGCAG+AGG | 0.678306 | 5:-1423641 | MsaT024847.1:CDS |
| TTGTGTGACAGATTCAGTCG+AGG | 0.697669 | 5:-1426752 | MsaT024847.1:CDS |
| ATTGGACCCATCCGACAATG+GGG | 0.707831 | 5:-1425470 | MsaT024847.1:CDS |
| GGCGACGCGAAAACAGACGG+AGG | 0.713947 | 5:+1427249 | None:intergenic |
| ATGCCAGAAATTCTCCGTGG+TGG | 0.726252 | 5:-1423740 | MsaT024847.1:CDS |
| TAGGAGAGCTATCACCACCA+CGG | 0.736061 | 5:+1423726 | None:intergenic |
| GCTACCGTAAAGGATCACAA+AGG | 0.764621 | 5:-1425622 | MsaT024847.1:CDS |
| GAAATGCCAGAAATTCTCCG+TGG | 0.824692 | 5:-1423743 | MsaT024847.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 1423580 | 1427449 | 1423580 | ID=MsaG024847 |
| Chr5 | mRNA | 1423580 | 1427449 | 1423580 | ID=MsaT024847.1;Parent=MsaG024847 |
| Chr5 | exon | 1423580 | 1423919 | 1423580 | ID=MsaT024847.1.exon10;Parent=MsaT024847.1 |
| Chr5 | CDS | 1423580 | 1423919 | 1423580 | ID=cds.MsaT024847.1;Parent=MsaT024847.1 |
| Chr5 | exon | 1424004 | 1424157 | 1424004 | ID=MsaT024847.1.exon9;Parent=MsaT024847.1 |
| Chr5 | CDS | 1424004 | 1424157 | 1424004 | ID=cds.MsaT024847.1;Parent=MsaT024847.1 |
| Chr5 | exon | 1424269 | 1424335 | 1424269 | ID=MsaT024847.1.exon8;Parent=MsaT024847.1 |
| Chr5 | CDS | 1424269 | 1424335 | 1424269 | ID=cds.MsaT024847.1;Parent=MsaT024847.1 |
| Chr5 | exon | 1424414 | 1424509 | 1424414 | ID=MsaT024847.1.exon7;Parent=MsaT024847.1 |
| Chr5 | CDS | 1424414 | 1424509 | 1424414 | ID=cds.MsaT024847.1;Parent=MsaT024847.1 |
| Chr5 | exon | 1424593 | 1424773 | 1424593 | ID=MsaT024847.1.exon6;Parent=MsaT024847.1 |
| Chr5 | CDS | 1424593 | 1424773 | 1424593 | ID=cds.MsaT024847.1;Parent=MsaT024847.1 |
| Chr5 | exon | 1425220 | 1425294 | 1425220 | ID=MsaT024847.1.exon5;Parent=MsaT024847.1 |
| Chr5 | CDS | 1425220 | 1425294 | 1425220 | ID=cds.MsaT024847.1;Parent=MsaT024847.1 |
| Chr5 | exon | 1425388 | 1425866 | 1425388 | ID=MsaT024847.1.exon4;Parent=MsaT024847.1 |
| Chr5 | CDS | 1425388 | 1425866 | 1425388 | ID=cds.MsaT024847.1;Parent=MsaT024847.1 |
| Chr5 | exon | 1426387 | 1427101 | 1426387 | ID=MsaT024847.1.exon3;Parent=MsaT024847.1 |
| Chr5 | CDS | 1426387 | 1427101 | 1426387 | ID=cds.MsaT024847.1;Parent=MsaT024847.1 |
| Chr5 | exon | 1427210 | 1427370 | 1427210 | ID=MsaT024847.1.exon2;Parent=MsaT024847.1 |
| Chr5 | CDS | 1427210 | 1427370 | 1427210 | ID=cds.MsaT024847.1;Parent=MsaT024847.1 |
| Chr5 | exon | 1427438 | 1427449 | 1427438 | ID=MsaT024847.1.exon1;Parent=MsaT024847.1 |
| Chr5 | CDS | 1427438 | 1427449 | 1427438 | ID=cds.MsaT024847.1;Parent=MsaT024847.1 |
| Gene Sequence |
| Protein sequence |