AlfalfaGEDB | MsaG025096

M. sativa ssp. caerulea / MsaG025096

KEGG: -
GO: -
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025096	XP_003611107.1	93.443	610	11	3	1	581	52	661	0.0	1161

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025096	sp\|C0LGH8\|Y1634_ARATH	63.072	612	187	9	4	579	54	662	0.0	773

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025096	tr\|G7KDD0\|G7KDD0_MEDTR	93.443	610	11	3	1	581	52	661	0.0	1161

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025096	MtrunA17_Chr5g0397651	93.443	610	11	3	1	581	52	661	0.0	1161
MsaG025096	MtrunA17_Chr8g0386631	73.026	608	130	6	2	579	53	656	0.0	890
MsaG025096	MtrunA17_Chr3g0113951	30.337	623	342	17	5	579	172	750	7.06e-79	264
MsaG025096	MtrunA17_Chr2g0283991	35.052	388	230	7	197	581	73	441	2.74e-73	241
MsaG025096	MtrunA17_Chr1g0193121	29.063	640	311	22	5	579	63	624	2.80e-72	243
MsaG025096	MtrunA17_Chr8g0379101	37.602	367	197	8	226	581	358	703	5.04e-69	236
MsaG025096	MtrunA17_Chr3g0105841	35.027	374	206	10	217	581	184	529	2.01e-62	214
MsaG025096	MtrunA17_Chr2g0284101	29.340	576	329	22	5	564	66	579	2.19e-53	192
MsaG025096	MtrunA17_Chr5g0409041	28.596	591	341	15	3	571	57	588	2.72e-51	186
MsaG025096	MtrunA17_Chr8g0382101	27.018	570	335	18	7	557	51	558	3.57e-49	180

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025096	AT1G63430.3	63.072	612	187	9	4	579	54	662	0.0	773
MsaG025096	AT1G63430.1	63.072	612	187	9	4	579	54	662	0.0	773
MsaG025096	AT1G63430.2	60.692	636	187	10	4	579	54	686	0.0	759
MsaG025096	AT5G41180.1	57.429	599	220	9	7	579	62	651	0.0	675
MsaG025096	AT5G41180.2	59.091	550	205	8	41	579	1	541	0.0	639
MsaG025096	AT5G45840.2	31.754	633	344	18	6	581	63	664	2.51e-80	266
MsaG025096	AT4G18640.1	38.259	379	209	12	207	581	317	674	3.93e-70	239
MsaG025096	AT5G45840.1	28.912	671	351	19	6	581	63	702	1.78e-64	224
MsaG025096	AT5G58540.3	34.771	371	198	10	217	581	5	337	1.48e-59	202
MsaG025096	AT5G58540.1	34.301	379	205	10	209	581	140	480	2.04e-58	203

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Find 136 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAACATCCTTGAAAA+CGG	0.497708	5:+3860703	None:intergenic
AAAAGCATGTATGTTTCCTT+TGG	0.370616	5:+3860093	None:intergenic
AAAAGGTTACTTGGTGGATT+GGG	0.411568	5:-3860020	MsaT025096.1:intron
AAACTTGCTTACAACAATGT+AGG	0.525194	5:+3860647	None:intergenic
AAAGGAAACATACATGCTTT+TGG	0.310951	5:-3860091	MsaT025096.1:CDS
AACTAGTGGGCACACCTTAG+GGG	0.641801	5:+3860407	None:intergenic
AAGAAGGATGCCAATTCTCA+TGG	0.518282	5:-3860554	MsaT025096.1:CDS
AAGTCTGCTACTTCTAACTG+AGG	0.695261	5:+3861633	None:intergenic
AATCATCTATCATTATTCCT+TGG	0.445148	5:-3861216	MsaT025096.1:CDS
AATCATGTGCGCAAGCATCA+CGG	0.619673	5:-3861346	MsaT025096.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	3859514	3862554	3859514	ID=MsaG025096
Chr5	mRNA	3859514	3862554	3859514	ID=MsaT025096.1;Parent=MsaG025096
Chr5	exon	3859514	3859756	3859514	ID=MsaT025096.1.exon11;Parent=MsaT025096.1
Chr5	CDS	3859514	3859756	3859514	ID=cds.MsaT025096.1;Parent=MsaT025096.1
Chr5	exon	3860021	3860236	3860021	ID=MsaT025096.1.exon10;Parent=MsaT025096.1
Chr5	CDS	3860021	3860236	3860021	ID=cds.MsaT025096.1;Parent=MsaT025096.1
Chr5	exon	3860422	3860579	3860422	ID=MsaT025096.1.exon9;Parent=MsaT025096.1
Chr5	CDS	3860422	3860579	3860422	ID=cds.MsaT025096.1;Parent=MsaT025096.1
Chr5	exon	3860659	3860794	3860659	ID=MsaT025096.1.exon8;Parent=MsaT025096.1
Chr5	CDS	3860659	3860794	3860659	ID=cds.MsaT025096.1;Parent=MsaT025096.1
Chr5	exon	3860890	3861095	3860890	ID=MsaT025096.1.exon7;Parent=MsaT025096.1
Chr5	CDS	3860890	3861095	3860890	ID=cds.MsaT025096.1;Parent=MsaT025096.1
Chr5	exon	3861173	3861397	3861173	ID=MsaT025096.1.exon6;Parent=MsaT025096.1
Chr5	CDS	3861173	3861397	3861173	ID=cds.MsaT025096.1;Parent=MsaT025096.1
Chr5	exon	3861428	3861492	3861428	ID=MsaT025096.1.exon5;Parent=MsaT025096.1
Chr5	CDS	3861428	3861492	3861428	ID=cds.MsaT025096.1;Parent=MsaT025096.1
Chr5	exon	3861579	3861695	3861579	ID=MsaT025096.1.exon4;Parent=MsaT025096.1
Chr5	CDS	3861579	3861695	3861579	ID=cds.MsaT025096.1;Parent=MsaT025096.1
Chr5	exon	3861955	3862092	3861955	ID=MsaT025096.1.exon3;Parent=MsaT025096.1
Chr5	CDS	3861955	3862092	3861955	ID=cds.MsaT025096.1;Parent=MsaT025096.1
Chr5	exon	3862177	3862320	3862177	ID=MsaT025096.1.exon2;Parent=MsaT025096.1
Chr5	CDS	3862177	3862320	3862177	ID=cds.MsaT025096.1;Parent=MsaT025096.1
Chr5	exon	3862457	3862554	3862457	ID=MsaT025096.1.exon1;Parent=MsaT025096.1
Chr5	CDS	3862457	3862554	3862457	ID=cds.MsaT025096.1;Parent=MsaT025096.1

Gene Sequence

>MsaT025096.1

ATGCTTGAATCAGATCTTTGTAACTGGTTTGGTGTATCATGCACTCTGGATAGAGATCATGTCATCAAGTTAAACATCTCAGGTTCATCATTGAAGGGAATTTTGCATGGGAACAATTTAATTGGAACTATACCTAAAGAACTATGTGTGTTGAAATCTCTTGAGGTGTTGGATTTGGGAATGAATCAGTTAACAGGACCGATTCCGCCGGAGATTGGAAATTTAGCTCTACTTGTGAACATAAACCTGCAGTCCAATGGGTTGACTGGTCGGATACCTCATGAGTTTGGAAATTTGAGATACCTTAAAGAACTTCGGCTCGATAGGAATAAGTTTCAAGGATCGGTTCCTGCTAGTGGAAGTTCTAATACACATGGAATGTATGTATCAAACGAGAATGTAACTGGCATCTGTCGTTCTCCTCAGTTAGAAGTAGCAGACTTTTCATATAATTTTTTAGTTGGTAGTATACCTAAATGCTTGGAGTTTCTCCCAAGGTTAAGTTTTCAAGGAAATTGCCTCCAGAGCAATGATCCAAAGCAGCGGCCTTCCACACAATGCGTGGTGGACCACCAATTCCACCAACTAGGTAATCATGTGCGCAAGCATCACGGACTGTCAGAACCTACTTGGCTTTTGGCTCTAGAAATAGTAGCAGGAACTATGGTCGGTTCTCTCTGTTTGATTGCCATTCTCGCTGCTTTTCAAAGATGCAATAACAAATCATCTATCATTATTCCTTGGAAAAAGTCTGCCAGCCAGAAATATCATACTGCAGTATACATAGACCCGGAGATGTTAAAGGACGTGAGAAGGTATAGCAGACAGGAGCTTGAAGAGGCTTGCGAAGACTTCAGCAACATAATTGGTTCCTCTCCAGACAGTGTGGTGTACAAGGGAACCATGAAAGGTGGACCTGAGATTGCTGTAATTTCTCTCTGCATCAAGGAGGAGCATTGGACAGGATATCTGGAACTCTACTTTCAGAGAGAGGTGGCAGAATTGGCAAGGTTGAATCATGAGAATACTGGAAAACTACTGGGATATTGTAGAGAGAGCAATCCGTTTTCAAGGATGTTGGTTTTTGATTATGCTTCAAATGGGACACTTCATGAGCACCTACATTGTTATGAAGAAGGATGCCAATTCTCATGGACACGGCGTATGAAAATTATCATAGGCATTGCACGTGGACTCAAGTATTTGCACACAGAAGTTGAACCTCCATTCACTATCTCAGAGCTGAACTCTAGTGCTGTATACCTTACGGAAGAATTTGCCCCTAAGTTGGTTGATTTTGAAAGCTGGAAGACAATTCTTGAAAGATCAGAAAAGAATTCTGGTTCTATTAGCAGCCAAGGTGCTGTTTGTGTTCTTCCGAACTCCCTCGAGGCACGCCATCTGGATACCAAAGGAAACATACATGCTTTTGGAGTACTTCTACTAGAGATAATCAGCGGGCGACCTCCATACTGTAAGGAAAAAGGTTACTTGGTGGATTGGGCCAAAGACTATCTTGAAAAGCCAGAAGTAATGTCGCATTTGGTGAATTCAGAATTGAAAAATTTTAGACATGATGACCTCAAAGTGATGTGCGAGGTGATAACTCTTTGTATCAATCCCGATACAACTGCGCGTCCATCTATGCAAGAATTATGCGGCATGCTGGAGAGCAGAATCGACACATCAGTAAGCGCGGATCTCAAGTCATCTTTGGCCTGGGCTGAACTTGCTCTTTTAGCATAA

Protein sequence

>MsaT025096.1

MLESDLCNWFGVSCTLDRDHVIKLNISGSSLKGILHGNNLIGTIPKELCVLKSLEVLDLGMNQLTGPIPPEIGNLALLVNINLQSNGLTGRIPHEFGNLRYLKELRLDRNKFQGSVPASGSSNTHGMYVSNENVTGICRSPQLEVADFSYNFLVGSIPKCLEFLPRLSFQGNCLQSNDPKQRPSTQCVVDHQFHQLGNHVRKHHGLSEPTWLLALEIVAGTMVGSLCLIAILAAFQRCNNKSSIIIPWKKSASQKYHTAVYIDPEMLKDVRRYSRQELEEACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEEHWTGYLELYFQREVAELARLNHENTGKLLGYCRESNPFSRMLVFDYASNGTLHEHLHCYEEGCQFSWTRRMKIIIGIARGLKYLHTEVEPPFTISELNSSAVYLTEEFAPKLVDFESWKTILERSEKNSGSISSQGAVCVLPNSLEARHLDTKGNIHAFGVLLLEIISGRPPYCKEKGYLVDWAKDYLEKPEVMSHLVNSELKNFRHDDLKVMCEVITLCINPDTTARPSMQELCGMLESRIDTSVSADLKSSLAWAELALLA*