Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG025099 | XP_013450559.1 | 94.930 | 710 | 30 | 1 | 1 | 710 | 23 | 726 | 0.0 | 1304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG025099 | sp|P92948|CDC5L_ARATH | 75.702 | 712 | 162 | 4 | 1 | 709 | 23 | 726 | 0.0 | 1038 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG025099 | tr|A0A072U4G1|A0A072U4G1_MEDTR | 94.930 | 710 | 30 | 1 | 1 | 710 | 23 | 726 | 0.0 | 1304 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG025099 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG025099 | MtrunA17_Chr7g0274481 | 94.930 | 710 | 30 | 1 | 1 | 710 | 23 | 726 | 0.0 | 1304 |
| MsaG025099 | MtrunA17_Chr5g0397691 | 94.108 | 594 | 26 | 2 | 1 | 594 | 23 | 607 | 0.0 | 1050 |
| MsaG025099 | MtrunA17_Chr5g0397681 | 91.837 | 49 | 4 | 0 | 613 | 661 | 1 | 49 | 4.79e-25 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG025099 | AT1G09770.1 | 75.702 | 712 | 162 | 4 | 1 | 709 | 23 | 726 | 0.0 | 1038 |
Find 206 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTCTTTCTAACTGTTTC+TGG | 0.008572 | 5:+3889578 | None:intergenic |
| TTCTGGGTCATTCAGCTTCT+TGG | 0.153986 | 5:+3889595 | None:intergenic |
| TGCCGGCGCCATACCACTTC+TGG | 0.177175 | 5:+3889163 | None:intergenic |
| CAGCATCTCTGGAGCTTATT+AGG | 0.228626 | 5:-3888794 | MsaT025099.1:CDS |
| GGAGTAAGGCCTGCACTTCC+AGG | 0.240853 | 5:+3889185 | None:intergenic |
| TTGGGTGTCTGTGGATAATT+AGG | 0.241982 | 5:+3889425 | None:intergenic |
| CATGATGGAAGCTGAAAATT+TGG | 0.248037 | 5:-3889342 | MsaT025099.1:CDS |
| GTTCTCTGAGGAGTTCTTAA+AGG | 0.283026 | 5:+3889389 | None:intergenic |
| AAAGCTGCTGTTATGAAATA+TGG | 0.287568 | 5:-3890397 | None:intergenic |
| GAATTGGTTGCATCACTATC+TGG | 0.302904 | 5:+3888964 | None:intergenic |
| GGTCGTGCAGGCTTCGATTC+AGG | 0.305523 | 5:+3890043 | None:intergenic |
| AAAGGAGCTTCTAGCCTTAC+TGG | 0.309592 | 5:-3888691 | MsaT025099.1:CDS |
| AGTCCACTCAGTCTTCTTAA+TGG | 0.314486 | 5:+3890285 | None:intergenic |
| CCCTGTCATAGAAGATTATC+AGG | 0.315605 | 5:-3888580 | MsaT025099.1:CDS |
| CCATTGCCTCACGAAGATAC+TGG | 0.317289 | 5:+3887855 | None:intergenic |
| TGGGGTCACTCCTAAGAAAA+AGG | 0.319124 | 5:-3889249 | MsaT025099.1:CDS |
| TCTTCAGCATCTTCTTGAAT+TGG | 0.331097 | 5:+3888948 | None:intergenic |
| GTTTGAGAAGAGGCCTCCTC+TGG | 0.334561 | 5:-3889792 | MsaT025099.1:CDS |
| ATCTCTTTCTAACTGTTTCT+GGG | 0.335857 | 5:+3889579 | None:intergenic |
| ATCTCGTCGGCTTGCTCAAT+AGG | 0.342238 | 5:+3888720 | None:intergenic |
| TCAAGTTCTTCTATAGTAGT+AGG | 0.344179 | 5:+3889719 | None:intergenic |
| CTCCGAAGGGAACTCCTCTC+AGG | 0.358383 | 5:-3889115 | MsaT025099.1:CDS |
| TAGGCCTCCTCCAGCATCTC+TGG | 0.367513 | 5:-3888805 | MsaT025099.1:CDS |
| GCGTGAGGAGATAGCAAATA+AGG | 0.368961 | 5:-3888646 | MsaT025099.1:CDS |
| GCAGGCTTCGATTCAGGATT+CGG | 0.385997 | 5:+3890049 | None:intergenic |
| TCTCGTCGGCTTGCTCAATA+GGG | 0.387795 | 5:+3888721 | None:intergenic |
| AGGCCCATTTGCTGCTCGTT+TGG | 0.388358 | 5:+3888608 | None:intergenic |
| TCAGATTTCCGATCAAGAAT+TGG | 0.389053 | 5:-3889534 | MsaT025099.1:CDS |
| CCTTGACGCCGCTTGTGTTA+AGG | 0.393639 | 5:-3890128 | MsaT025099.1:CDS |
| AGGCTGCTGGGATTGATATA+AGG | 0.409355 | 5:-3889862 | MsaT025099.1:CDS |
| TCTGCAACCCCTGGAAGTGC+AGG | 0.411721 | 5:-3889194 | MsaT025099.1:CDS |
| AGAGATGCTGGAGGAGGCCT+AGG | 0.415805 | 5:+3888807 | None:intergenic |
| TATGGTCTATCAAGTGTTGC+TGG | 0.416170 | 5:-3887746 | MsaT025099.1:CDS |
| GCCGGCGCCATACCACTTCT+GGG | 0.416494 | 5:+3889164 | None:intergenic |
| GGATCCAAACGAGCAGCAAA+TGG | 0.417377 | 5:-3888612 | MsaT025099.1:CDS |
| AAAGGAGTCATGGCTTGGTT+GGG | 0.420072 | 5:+3889407 | None:intergenic |
| GCTACATATCAATGAAGATA+TGG | 0.420115 | 5:-3889087 | MsaT025099.1:CDS |
| ACCCACAATGGTAGCACTAA+TGG | 0.421586 | 5:+3890189 | None:intergenic |
| TAAGGCAGCGGAGGAGGAAA+AGG | 0.424744 | 5:-3889844 | MsaT025099.1:CDS |
| TTGGATGAAATTGCCAAGTT+GGG | 0.429250 | 5:-3889515 | MsaT025099.1:CDS |
| ACGACCCGATCCTGTTGATA+TGG | 0.431516 | 5:-3890026 | MsaT025099.1:CDS |
| CAGTATCTTCGTGAGGCAAT+GGG | 0.437430 | 5:-3887854 | MsaT025099.1:CDS |
| TTTGATACCCGCAACACATA+TGG | 0.438271 | 5:-3887764 | MsaT025099.1:CDS |
| TGATAGACCATATGTGTTGC+GGG | 0.443197 | 5:+3887757 | None:intergenic |
| ATTGGATGAAATTGCCAAGT+TGG | 0.444138 | 5:-3889516 | MsaT025099.1:CDS |
| AAGAACTTGAGGGGAAAAGA+AGG | 0.444403 | 5:-3889706 | MsaT025099.1:CDS |
| GCAAATAAGGAGAGAGAGAA+AGG | 0.446065 | 5:-3888633 | MsaT025099.1:CDS |
| ACTAATGGTTCTCCAACTAA+TGG | 0.446782 | 5:+3890204 | None:intergenic |
| CTAATAAGCTCCAGAGATGC+TGG | 0.447893 | 5:+3888795 | None:intergenic |
| CCATACCACTTCTGGGAGTA+AGG | 0.448683 | 5:+3889171 | None:intergenic |
| ATCCTCTTCAATCTTCTCCT+CGG | 0.449369 | 5:+3888923 | None:intergenic |
| GAGGGAGTCAGCAGTGGGAT+TGG | 0.449422 | 5:+3889215 | None:intergenic |
| AAGAGAGAATTGAAGGCTGC+TGG | 0.451049 | 5:-3889875 | MsaT025099.1:CDS |
| TCCTGATAATCTTCTATGAC+AGG | 0.451422 | 5:+3888579 | None:intergenic |
| TCATACTCATCCATATCAAC+AGG | 0.454291 | 5:+3890016 | None:intergenic |
| TCCCCTGGACGCAATTTCCT+AGG | 0.458724 | 5:+3890079 | None:intergenic |
| CAGAAATTCCGTTTGAGAAG+AGG | 0.469889 | 5:-3889802 | MsaT025099.1:CDS |
| TGCAGAGAGGCAAGATGCCC+CGG | 0.470266 | 5:-3889633 | MsaT025099.1:CDS |
| TAAAGGAGTCATGGCTTGGT+TGG | 0.470630 | 5:+3889406 | None:intergenic |
| GAGTCTCAGACACCACTGTT+AGG | 0.471291 | 5:-3889308 | MsaT025099.1:CDS |
| CTGAAAATTTGGCCAGGCTG+AGG | 0.471566 | 5:-3889331 | MsaT025099.1:CDS |
| TTCTTAAAGGAGTCATGGCT+TGG | 0.472192 | 5:+3889402 | None:intergenic |
| TGGCATGCAGAATAGCAGCC+GGG | 0.473211 | 5:+3889615 | None:intergenic |
| TTGATATAAGGCAGCGGAGG+AGG | 0.474103 | 5:-3889850 | MsaT025099.1:CDS |
| TGATGTTGCTGATGAGGATA+GGG | 0.479449 | 5:-3889762 | MsaT025099.1:CDS |
| AATTTCATCCAATTCTTGAT+CGG | 0.479560 | 5:+3889526 | None:intergenic |
| AATCTGAAGGATGCAACTCC+GGG | 0.484835 | 5:+3889276 | None:intergenic |
| CCAGTATCTTCGTGAGGCAA+TGG | 0.484875 | 5:-3887855 | MsaT025099.1:CDS |
| TGTCTGAGACTCCCTCAGCC+TGG | 0.484905 | 5:+3889319 | None:intergenic |
| AACGATCAAAAGTCATTCAA+AGG | 0.485643 | 5:-3888836 | MsaT025099.1:CDS |
| TCCTCTTCAATCTTCTCCTC+GGG | 0.488427 | 5:+3888924 | None:intergenic |
| ACCATTAGTGCTACCATTGT+GGG | 0.490042 | 5:-3890190 | MsaT025099.1:CDS |
| GAGTAAGGCCTGCACTTCCA+GGG | 0.490905 | 5:+3889186 | None:intergenic |
| AGAAGAAGAGGCACGGCAGA+AGG | 0.493242 | 5:-3888871 | MsaT025099.1:CDS |
| CTCCTTTCTTATCATCTCGT+CGG | 0.493278 | 5:+3888707 | None:intergenic |
| TCATTCAAAGGGAACTTCCT+AGG | 0.493709 | 5:-3888824 | MsaT025099.1:CDS |
| TGCACTTCCAGGGGTTGCAG+AGG | 0.493979 | 5:+3889196 | None:intergenic |
| AAATCTGAAGGATGCAACTC+CGG | 0.494050 | 5:+3889275 | None:intergenic |
| CTGACTCCCTCTGCAACCCC+TGG | 0.496434 | 5:-3889203 | MsaT025099.1:CDS |
| TCTTCTATGACAGGGATAGC+AGG | 0.496725 | 5:+3888588 | None:intergenic |
| CTCAGTGGAGAACCATTAGT+TGG | 0.497414 | 5:-3890216 | MsaT025099.1:CDS |
| GTCTCCGTCAGCTCTTATCA+AGG | 0.499862 | 5:+3888767 | None:intergenic |
| GAAGTGGTATGGCGCCGGCA+AGG | 0.499877 | 5:-3889160 | MsaT025099.1:CDS |
| TTCAGAAGCATGTGCTCGGT+TGG | 0.501151 | 5:-3889981 | MsaT025099.1:CDS |
| GTGAGAAGTAAGCTGGATGA+TGG | 0.502979 | 5:-3887680 | MsaT025099.1:CDS |
| CTCATCCATATCAACAGGAT+CGG | 0.503902 | 5:+3890021 | None:intergenic |
| ATCGCTGCCCACAAGGTCAA+TGG | 0.504621 | 5:+3889487 | None:intergenic |
| AAGTAAGCTGGATGATGGGA+AGG | 0.506469 | 5:-3887675 | MsaT025099.1:CDS |
| ATAGCATCTCCTTTACTAGC+TGG | 0.506651 | 5:+3889365 | None:intergenic |
| AGAGGATATGTCTGATAGAA+TGG | 0.507303 | 5:-3888907 | MsaT025099.1:CDS |
| AGCTCCAGAGATGCTGGAGG+AGG | 0.508047 | 5:+3888801 | None:intergenic |
| TGCAGATTTGCAAACGAGTA+GGG | 0.508803 | 5:+3890348 | None:intergenic |
| TCCCTGAGAGGAGTTCCCTT+CGG | 0.510495 | 5:+3889113 | None:intergenic |
| GATGATTCGACTTGAGAAGA+AGG | 0.511403 | 5:-3887648 | MsaT025099.1:CDS |
| TGATAGAATGGCTAGAGAAA+AGG | 0.511992 | 5:-3888895 | MsaT025099.1:CDS |
| TTGGCATGCAGAATAGCAGC+CGG | 0.514383 | 5:+3889614 | None:intergenic |
| CAGAGAACACCAGCTAGTAA+AGG | 0.515217 | 5:-3889374 | MsaT025099.1:CDS |
| ACGAGTAGCACTGCTACCTT+CGG | 0.515674 | 5:+3889457 | None:intergenic |
| GTTGCAGAGGGAGTCAGCAG+TGG | 0.516056 | 5:+3889209 | None:intergenic |
| AAGTGGTATGGCGCCGGCAA+GGG | 0.516862 | 5:-3889159 | MsaT025099.1:CDS |
| TGCTTTCAGAAGCATGTGCT+CGG | 0.518933 | 5:-3889985 | MsaT025099.1:CDS |
| GGTTATGCCATTGACCTTGT+GGG | 0.519574 | 5:-3889494 | MsaT025099.1:CDS |
| CATTGCCTCACGAAGATACT+GGG | 0.519621 | 5:+3887856 | None:intergenic |
| TGGGTGTCTGTGGATAATTA+GGG | 0.519886 | 5:+3889426 | None:intergenic |
| TCAACAGGATCGGGTCGTGC+AGG | 0.520300 | 5:+3890031 | None:intergenic |
| TTGATGTTGCTGATGAGGAT+AGG | 0.524642 | 5:-3889763 | MsaT025099.1:CDS |
| TCGGCTTGCTCAATAGGGGT+TGG | 0.524733 | 5:+3888726 | None:intergenic |
| TGAAAATTTGGCCAGGCTGA+GGG | 0.525084 | 5:-3889330 | MsaT025099.1:CDS |
| GACCCTAGGAAATTGCGTCC+AGG | 0.525314 | 5:-3890082 | MsaT025099.1:CDS |
| CAAGTTCTTCTATAGTAGTA+GGG | 0.528361 | 5:+3889720 | None:intergenic |
| AGAGGAGGCCTCTTCTCAAA+CGG | 0.529206 | 5:+3889794 | None:intergenic |
| TGAGAATGTGAGAAGTAAGC+TGG | 0.529343 | 5:-3887687 | MsaT025099.1:CDS |
| GCTTGCTCAATAGGGGTTGG+TGG | 0.531592 | 5:+3888729 | None:intergenic |
| CACTCAGTCTTCTTAATGGA+AGG | 0.532258 | 5:+3890289 | None:intergenic |
| GCACTTCCAGGGGTTGCAGA+GGG | 0.532965 | 5:+3889197 | None:intergenic |
| TCATCCATATCAACAGGATC+GGG | 0.534614 | 5:+3890022 | None:intergenic |
| AGCATTGTCATGCTCCAGTA+AGG | 0.535038 | 5:+3888677 | None:intergenic |
| ACCCTAGGAAATTGCGTCCA+GGG | 0.536757 | 5:-3890081 | MsaT025099.1:CDS |
| GATCCAAACGAGCAGCAAAT+GGG | 0.542547 | 5:-3888611 | MsaT025099.1:CDS |
| TTGCAGATTTGCAAACGAGT+AGG | 0.543492 | 5:+3890347 | None:intergenic |
| AAGGACGATAACTATGATCC+TGG | 0.549150 | 5:-3890109 | MsaT025099.1:CDS |
| AGAGAGAATTGAAGGCTGCT+GGG | 0.549517 | 5:-3889874 | MsaT025099.1:CDS |
| GGGTTATGCCATTGACCTTG+TGG | 0.550781 | 5:-3889495 | MsaT025099.1:CDS |
| TGATCGGAAATCTGAGGTGG+TGG | 0.551298 | 5:+3889542 | None:intergenic |
| CCTTACTCCCAGAAGTGGTA+TGG | 0.551739 | 5:-3889171 | MsaT025099.1:CDS |
| AGCCGACGAGATGATAAGAA+AGG | 0.552168 | 5:-3888709 | MsaT025099.1:CDS |
| GAAAAGAAGGATTGATGTTG+AGG | 0.552508 | 5:-3889693 | MsaT025099.1:CDS |
| GGTATGGCGCCGGCAAGGGA+TGG | 0.553823 | 5:-3889155 | MsaT025099.1:CDS |
| AGGAGTTCTTAAAGGAGTCA+TGG | 0.554344 | 5:+3889397 | None:intergenic |
| TCCCAGAAGTGGTATGGCGC+CGG | 0.554437 | 5:-3889165 | MsaT025099.1:CDS |
| AACCATTAGTGCTACCATTG+TGG | 0.555517 | 5:-3890191 | MsaT025099.1:CDS |
| TGAGAAAGCAAGACGTTGCA+AGG | 0.556741 | 5:-3889664 | MsaT025099.1:CDS |
| GTCAATGGCATAACCCAACT+TGG | 0.557603 | 5:+3889502 | None:intergenic |
| ATGATCCTGGTGATGACCCT+AGG | 0.560117 | 5:-3890096 | MsaT025099.1:CDS |
| GGATTCGGATCAATCTCCCC+TGG | 0.561665 | 5:+3890064 | None:intergenic |
| CCCCTGGACGCAATTTCCTA+GGG | 0.562986 | 5:+3890080 | None:intergenic |
| ACGATCAAAAGTCATTCAAA+GGG | 0.567785 | 5:-3888835 | MsaT025099.1:CDS |
| CAAAACAGTGTAAAGCTCGT+TGG | 0.569337 | 5:-3890327 | MsaT025099.1:CDS |
| TTGCAGAGGGAGTCAGCAGT+GGG | 0.571318 | 5:+3889210 | None:intergenic |
| ACTACTATAGAAGAACTTGA+GGG | 0.571318 | 5:-3889716 | MsaT025099.1:CDS |
| TAAAGGAGATGCTATCATGA+TGG | 0.573963 | 5:-3889357 | MsaT025099.1:CDS |
| TTACTAGCTGGTGTTCTCTG+AGG | 0.578802 | 5:+3889377 | None:intergenic |
| TAGAGAAAAGGCAGAAGAAG+AGG | 0.579560 | 5:-3888883 | MsaT025099.1:CDS |
| CCTTAACACAAGCGGCGTCA+AGG | 0.579579 | 5:+3890128 | None:intergenic |
| TTGATAGACCATATGTGTTG+CGG | 0.580931 | 5:+3887756 | None:intergenic |
| TCCGAAGGGAACTCCTCTCA+GGG | 0.580985 | 5:-3889114 | MsaT025099.1:CDS |
| ATGGCTTGGTTGGGTGTCTG+TGG | 0.585691 | 5:+3889416 | None:intergenic |
| AAGGTTACATTACTCACGCA+AGG | 0.586053 | 5:-3887629 | MsaT025099.1:CDS |
| AGTAAGGCCTGCACTTCCAG+GGG | 0.586407 | 5:+3889187 | None:intergenic |
| AACTCCTTGATAAGAGCTGA+CGG | 0.589304 | 5:-3888771 | MsaT025099.1:CDS |
| CCTGATAATCTTCTATGACA+GGG | 0.589597 | 5:+3888580 | None:intergenic |
| GTAAAGCTCGTTGGTATGAG+TGG | 0.590546 | 5:-3890318 | MsaT025099.1:CDS |
| GACTGAGTGGACTCGAGAAG+AGG | 0.592125 | 5:-3890275 | MsaT025099.1:CDS |
| TGCTTCAACAAAATCCTCGA+GGG | 0.592155 | 5:+3887817 | None:intergenic |
| CTCCTTCGCAGTGTCTTGAA+CGG | 0.594673 | 5:-3890162 | MsaT025099.1:CDS |
| TGCTGATGAGGATAGGGAGG+TGG | 0.595277 | 5:-3889756 | MsaT025099.1:CDS |
| TGAGAAGTAAGCTGGATGAT+GGG | 0.598085 | 5:-3887679 | MsaT025099.1:CDS |
| TACTACTATAGAAGAACTTG+AGG | 0.598439 | 5:-3889717 | MsaT025099.1:CDS |
| AAAAGGCAGAAGAAGAGGCA+CGG | 0.599691 | 5:-3888878 | MsaT025099.1:CDS |
| TTTGAGAAGAGGCCTCCTCT+GGG | 0.600719 | 5:-3889791 | MsaT025099.1:CDS |
| CTAATGGTTCTCCACTGAGT+AGG | 0.603402 | 5:+3890220 | None:intergenic |
| TGGAAGCTGAAAATTTGGCC+AGG | 0.607474 | 5:-3889337 | MsaT025099.1:CDS |
| GCTCGGTTGGCTAACACGAA+AGG | 0.608258 | 5:-3889968 | MsaT025099.1:CDS |
| TCTCAGACACCACTGTTAGG+AGG | 0.609284 | 5:-3889305 | MsaT025099.1:CDS |
| AGCGGAGGAGGAAAAGGAGA+GGG | 0.609580 | 5:-3889838 | MsaT025099.1:CDS |
| AGAAACAGCTTGAGGAAGCG+AGG | 0.613924 | 5:-3889919 | MsaT025099.1:CDS |
| CAGCGGAGGAGGAAAAGGAG+AGG | 0.619802 | 5:-3889839 | MsaT025099.1:CDS |
| CTGGGATTGATATAAGGCAG+CGG | 0.621106 | 5:-3889856 | MsaT025099.1:CDS |
| ACTGTTAGGAGGAGAGAACC+CGG | 0.623267 | 5:-3889294 | MsaT025099.1:CDS |
| GCAGGCCTTACTCCCAGAAG+TGG | 0.624004 | 5:-3889176 | MsaT025099.1:CDS |
| CGAAGGAGTACGACCCACAA+TGG | 0.624367 | 5:+3890177 | None:intergenic |
| CCCTAGGAAATTGCGTCCAG+GGG | 0.631019 | 5:-3890080 | MsaT025099.1:CDS |
| CTCGTCGGCTTGCTCAATAG+GGG | 0.633774 | 5:+3888722 | None:intergenic |
| AACAGCTTGAGGAAGCGAGG+AGG | 0.635219 | 5:-3889916 | MsaT025099.1:CDS |
| GGCATGCAGAATAGCAGCCG+GGG | 0.639810 | 5:+3889616 | None:intergenic |
| AATTTCCTAGGGTCATCACC+AGG | 0.641833 | 5:+3890091 | None:intergenic |
| TGTTGCTGATGAGGATAGGG+AGG | 0.645550 | 5:-3889759 | MsaT025099.1:CDS |
| AGAAGATGCTGAAGAGCCCG+AGG | 0.646686 | 5:-3888940 | MsaT025099.1:CDS |
| CTACTATAGAAGAACTTGAG+GGG | 0.654103 | 5:-3889715 | MsaT025099.1:CDS |
| GCCCGAGGAGAAGATTGAAG+AGG | 0.654306 | 5:-3888925 | MsaT025099.1:CDS |
| ATAGTGCTAGACTCGAGCTA+CGG | 0.656913 | 5:-3889055 | MsaT025099.1:CDS |
| TGAGTTCATCGCTGCCCACA+AGG | 0.658141 | 5:+3889480 | None:intergenic |
| GTTATCGTCCTTAACACAAG+CGG | 0.659717 | 5:+3890120 | None:intergenic |
| AATTCTTGATCGGAAATCTG+AGG | 0.665249 | 5:+3889536 | None:intergenic |
| AGCTAGGGAGAAACAGCTTG+AGG | 0.665565 | 5:-3889927 | MsaT025099.1:CDS |
| TACCGTTCAAGACACTGCGA+AGG | 0.666095 | 5:+3890160 | None:intergenic |
| GGCAGCGATGAACTCACCGA+AGG | 0.666391 | 5:-3889473 | MsaT025099.1:CDS |
| AGGTTACATTACTCACGCAA+GGG | 0.667391 | 5:-3887628 | MsaT025099.1:CDS |
| CTAAGCTTACGCCTACTCAG+TGG | 0.671805 | 5:-3890231 | MsaT025099.1:CDS |
| ACATCAAAATAACCCAGAGG+AGG | 0.672004 | 5:+3889779 | None:intergenic |
| TCTTGATCGGAAATCTGAGG+TGG | 0.678038 | 5:+3889539 | None:intergenic |
| GGGTTCTCTCCTCCTAACAG+TGG | 0.680208 | 5:+3889296 | None:intergenic |
| CAATGCTAAGTATCCGCGTG+AGG | 0.680301 | 5:-3888661 | MsaT025099.1:CDS |
| CTTCCATTAAGAAGACTGAG+TGG | 0.680364 | 5:-3890288 | MsaT025099.1:CDS |
| TTATTTGCTATCTCCTCACG+CGG | 0.684948 | 5:+3888648 | None:intergenic |
| TGAAGCCCAGTATCTTCGTG+AGG | 0.688109 | 5:-3887861 | MsaT025099.1:CDS |
| GTGCTTCAACAAAATCCTCG+AGG | 0.688213 | 5:+3887816 | None:intergenic |
| ATATGTAGCTCATCCCTGAG+AGG | 0.688581 | 5:+3889101 | None:intergenic |
| AGTATCTTCGTGAGGCAATG+GGG | 0.691770 | 5:-3887853 | MsaT025099.1:CDS |
| GGATTGATATAAGGCAGCGG+AGG | 0.699913 | 5:-3889853 | MsaT025099.1:CDS |
| ATAAGCTCCAGAGATGCTGG+AGG | 0.701115 | 5:+3888798 | None:intergenic |
| TGATATGGATGAGTATGAGA+AGG | 0.714958 | 5:-3890011 | MsaT025099.1:CDS |
| TGTCATAGAAGATTATCAGG+AGG | 0.727087 | 5:-3888577 | MsaT025099.1:CDS |
| GCATGAAAATGATTCCCTCG+AGG | 0.731393 | 5:-3887831 | MsaT025099.1:CDS |
| CAAGGAATAAAATTGCAGAG+AGG | 0.745082 | 5:-3889646 | MsaT025099.1:CDS |
| GCAACATCAAAATAACCCAG+AGG | 0.761769 | 5:+3889776 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 3887607 | 3890407 | 3887607 | ID=MsaG025099 |
| Chr5 | mRNA | 3887607 | 3890407 | 3887607 | ID=MsaT025099.1;Parent=MsaG025099 |
| Chr5 | exon | 3887607 | 3887903 | 3887607 | ID=MsaT025099.1.exon2;Parent=MsaT025099.1 |
| Chr5 | CDS | 3887607 | 3887903 | 3887607 | ID=cds.MsaT025099.1;Parent=MsaT025099.1 |
| Chr5 | exon | 3888563 | 3890407 | 3888563 | ID=MsaT025099.1.exon1;Parent=MsaT025099.1 |
| Chr5 | CDS | 3888563 | 3890407 | 3888563 | ID=cds.MsaT025099.1;Parent=MsaT025099.1 |
| Gene Sequence |
| Protein sequence |