Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025099 | XP_013450559.1 | 94.930 | 710 | 30 | 1 | 1 | 710 | 23 | 726 | 0.0 | 1304 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025099 | sp|P92948|CDC5L_ARATH | 75.702 | 712 | 162 | 4 | 1 | 709 | 23 | 726 | 0.0 | 1038 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025099 | tr|A0A072U4G1|A0A072U4G1_MEDTR | 94.930 | 710 | 30 | 1 | 1 | 710 | 23 | 726 | 0.0 | 1304 |
Gene ID | Type | Classification |
---|---|---|
MsaG025099 | TF | MYB-related |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025099 | MtrunA17_Chr7g0274481 | 94.930 | 710 | 30 | 1 | 1 | 710 | 23 | 726 | 0.0 | 1304 |
MsaG025099 | MtrunA17_Chr5g0397691 | 94.108 | 594 | 26 | 2 | 1 | 594 | 23 | 607 | 0.0 | 1050 |
MsaG025099 | MtrunA17_Chr5g0397681 | 91.837 | 49 | 4 | 0 | 613 | 661 | 1 | 49 | 4.79e-25 | 98.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025099 | AT1G09770.1 | 75.702 | 712 | 162 | 4 | 1 | 709 | 23 | 726 | 0.0 | 1038 |
Find 206 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATCTCTTTCTAACTGTTTC+TGG | 0.008572 | 5:+3889578 | None:intergenic |
TTCTGGGTCATTCAGCTTCT+TGG | 0.153986 | 5:+3889595 | None:intergenic |
TGCCGGCGCCATACCACTTC+TGG | 0.177175 | 5:+3889163 | None:intergenic |
CAGCATCTCTGGAGCTTATT+AGG | 0.228626 | 5:-3888794 | MsaT025099.1:CDS |
GGAGTAAGGCCTGCACTTCC+AGG | 0.240853 | 5:+3889185 | None:intergenic |
TTGGGTGTCTGTGGATAATT+AGG | 0.241982 | 5:+3889425 | None:intergenic |
CATGATGGAAGCTGAAAATT+TGG | 0.248037 | 5:-3889342 | MsaT025099.1:CDS |
GTTCTCTGAGGAGTTCTTAA+AGG | 0.283026 | 5:+3889389 | None:intergenic |
AAAGCTGCTGTTATGAAATA+TGG | 0.287568 | 5:-3890397 | None:intergenic |
GAATTGGTTGCATCACTATC+TGG | 0.302904 | 5:+3888964 | None:intergenic |
GGTCGTGCAGGCTTCGATTC+AGG | 0.305523 | 5:+3890043 | None:intergenic |
AAAGGAGCTTCTAGCCTTAC+TGG | 0.309592 | 5:-3888691 | MsaT025099.1:CDS |
AGTCCACTCAGTCTTCTTAA+TGG | 0.314486 | 5:+3890285 | None:intergenic |
CCCTGTCATAGAAGATTATC+AGG | 0.315605 | 5:-3888580 | MsaT025099.1:CDS |
CCATTGCCTCACGAAGATAC+TGG | 0.317289 | 5:+3887855 | None:intergenic |
TGGGGTCACTCCTAAGAAAA+AGG | 0.319124 | 5:-3889249 | MsaT025099.1:CDS |
TCTTCAGCATCTTCTTGAAT+TGG | 0.331097 | 5:+3888948 | None:intergenic |
GTTTGAGAAGAGGCCTCCTC+TGG | 0.334561 | 5:-3889792 | MsaT025099.1:CDS |
ATCTCTTTCTAACTGTTTCT+GGG | 0.335857 | 5:+3889579 | None:intergenic |
ATCTCGTCGGCTTGCTCAAT+AGG | 0.342238 | 5:+3888720 | None:intergenic |
TCAAGTTCTTCTATAGTAGT+AGG | 0.344179 | 5:+3889719 | None:intergenic |
CTCCGAAGGGAACTCCTCTC+AGG | 0.358383 | 5:-3889115 | MsaT025099.1:CDS |
TAGGCCTCCTCCAGCATCTC+TGG | 0.367513 | 5:-3888805 | MsaT025099.1:CDS |
GCGTGAGGAGATAGCAAATA+AGG | 0.368961 | 5:-3888646 | MsaT025099.1:CDS |
GCAGGCTTCGATTCAGGATT+CGG | 0.385997 | 5:+3890049 | None:intergenic |
TCTCGTCGGCTTGCTCAATA+GGG | 0.387795 | 5:+3888721 | None:intergenic |
AGGCCCATTTGCTGCTCGTT+TGG | 0.388358 | 5:+3888608 | None:intergenic |
TCAGATTTCCGATCAAGAAT+TGG | 0.389053 | 5:-3889534 | MsaT025099.1:CDS |
CCTTGACGCCGCTTGTGTTA+AGG | 0.393639 | 5:-3890128 | MsaT025099.1:CDS |
AGGCTGCTGGGATTGATATA+AGG | 0.409355 | 5:-3889862 | MsaT025099.1:CDS |
TCTGCAACCCCTGGAAGTGC+AGG | 0.411721 | 5:-3889194 | MsaT025099.1:CDS |
AGAGATGCTGGAGGAGGCCT+AGG | 0.415805 | 5:+3888807 | None:intergenic |
TATGGTCTATCAAGTGTTGC+TGG | 0.416170 | 5:-3887746 | MsaT025099.1:CDS |
GCCGGCGCCATACCACTTCT+GGG | 0.416494 | 5:+3889164 | None:intergenic |
GGATCCAAACGAGCAGCAAA+TGG | 0.417377 | 5:-3888612 | MsaT025099.1:CDS |
AAAGGAGTCATGGCTTGGTT+GGG | 0.420072 | 5:+3889407 | None:intergenic |
GCTACATATCAATGAAGATA+TGG | 0.420115 | 5:-3889087 | MsaT025099.1:CDS |
ACCCACAATGGTAGCACTAA+TGG | 0.421586 | 5:+3890189 | None:intergenic |
TAAGGCAGCGGAGGAGGAAA+AGG | 0.424744 | 5:-3889844 | MsaT025099.1:CDS |
TTGGATGAAATTGCCAAGTT+GGG | 0.429250 | 5:-3889515 | MsaT025099.1:CDS |
ACGACCCGATCCTGTTGATA+TGG | 0.431516 | 5:-3890026 | MsaT025099.1:CDS |
CAGTATCTTCGTGAGGCAAT+GGG | 0.437430 | 5:-3887854 | MsaT025099.1:CDS |
TTTGATACCCGCAACACATA+TGG | 0.438271 | 5:-3887764 | MsaT025099.1:CDS |
TGATAGACCATATGTGTTGC+GGG | 0.443197 | 5:+3887757 | None:intergenic |
ATTGGATGAAATTGCCAAGT+TGG | 0.444138 | 5:-3889516 | MsaT025099.1:CDS |
AAGAACTTGAGGGGAAAAGA+AGG | 0.444403 | 5:-3889706 | MsaT025099.1:CDS |
GCAAATAAGGAGAGAGAGAA+AGG | 0.446065 | 5:-3888633 | MsaT025099.1:CDS |
ACTAATGGTTCTCCAACTAA+TGG | 0.446782 | 5:+3890204 | None:intergenic |
CTAATAAGCTCCAGAGATGC+TGG | 0.447893 | 5:+3888795 | None:intergenic |
CCATACCACTTCTGGGAGTA+AGG | 0.448683 | 5:+3889171 | None:intergenic |
ATCCTCTTCAATCTTCTCCT+CGG | 0.449369 | 5:+3888923 | None:intergenic |
GAGGGAGTCAGCAGTGGGAT+TGG | 0.449422 | 5:+3889215 | None:intergenic |
AAGAGAGAATTGAAGGCTGC+TGG | 0.451049 | 5:-3889875 | MsaT025099.1:CDS |
TCCTGATAATCTTCTATGAC+AGG | 0.451422 | 5:+3888579 | None:intergenic |
TCATACTCATCCATATCAAC+AGG | 0.454291 | 5:+3890016 | None:intergenic |
TCCCCTGGACGCAATTTCCT+AGG | 0.458724 | 5:+3890079 | None:intergenic |
CAGAAATTCCGTTTGAGAAG+AGG | 0.469889 | 5:-3889802 | MsaT025099.1:CDS |
TGCAGAGAGGCAAGATGCCC+CGG | 0.470266 | 5:-3889633 | MsaT025099.1:CDS |
TAAAGGAGTCATGGCTTGGT+TGG | 0.470630 | 5:+3889406 | None:intergenic |
GAGTCTCAGACACCACTGTT+AGG | 0.471291 | 5:-3889308 | MsaT025099.1:CDS |
CTGAAAATTTGGCCAGGCTG+AGG | 0.471566 | 5:-3889331 | MsaT025099.1:CDS |
TTCTTAAAGGAGTCATGGCT+TGG | 0.472192 | 5:+3889402 | None:intergenic |
TGGCATGCAGAATAGCAGCC+GGG | 0.473211 | 5:+3889615 | None:intergenic |
TTGATATAAGGCAGCGGAGG+AGG | 0.474103 | 5:-3889850 | MsaT025099.1:CDS |
TGATGTTGCTGATGAGGATA+GGG | 0.479449 | 5:-3889762 | MsaT025099.1:CDS |
AATTTCATCCAATTCTTGAT+CGG | 0.479560 | 5:+3889526 | None:intergenic |
AATCTGAAGGATGCAACTCC+GGG | 0.484835 | 5:+3889276 | None:intergenic |
CCAGTATCTTCGTGAGGCAA+TGG | 0.484875 | 5:-3887855 | MsaT025099.1:CDS |
TGTCTGAGACTCCCTCAGCC+TGG | 0.484905 | 5:+3889319 | None:intergenic |
AACGATCAAAAGTCATTCAA+AGG | 0.485643 | 5:-3888836 | MsaT025099.1:CDS |
TCCTCTTCAATCTTCTCCTC+GGG | 0.488427 | 5:+3888924 | None:intergenic |
ACCATTAGTGCTACCATTGT+GGG | 0.490042 | 5:-3890190 | MsaT025099.1:CDS |
GAGTAAGGCCTGCACTTCCA+GGG | 0.490905 | 5:+3889186 | None:intergenic |
AGAAGAAGAGGCACGGCAGA+AGG | 0.493242 | 5:-3888871 | MsaT025099.1:CDS |
CTCCTTTCTTATCATCTCGT+CGG | 0.493278 | 5:+3888707 | None:intergenic |
TCATTCAAAGGGAACTTCCT+AGG | 0.493709 | 5:-3888824 | MsaT025099.1:CDS |
TGCACTTCCAGGGGTTGCAG+AGG | 0.493979 | 5:+3889196 | None:intergenic |
AAATCTGAAGGATGCAACTC+CGG | 0.494050 | 5:+3889275 | None:intergenic |
CTGACTCCCTCTGCAACCCC+TGG | 0.496434 | 5:-3889203 | MsaT025099.1:CDS |
TCTTCTATGACAGGGATAGC+AGG | 0.496725 | 5:+3888588 | None:intergenic |
CTCAGTGGAGAACCATTAGT+TGG | 0.497414 | 5:-3890216 | MsaT025099.1:CDS |
GTCTCCGTCAGCTCTTATCA+AGG | 0.499862 | 5:+3888767 | None:intergenic |
GAAGTGGTATGGCGCCGGCA+AGG | 0.499877 | 5:-3889160 | MsaT025099.1:CDS |
TTCAGAAGCATGTGCTCGGT+TGG | 0.501151 | 5:-3889981 | MsaT025099.1:CDS |
GTGAGAAGTAAGCTGGATGA+TGG | 0.502979 | 5:-3887680 | MsaT025099.1:CDS |
CTCATCCATATCAACAGGAT+CGG | 0.503902 | 5:+3890021 | None:intergenic |
ATCGCTGCCCACAAGGTCAA+TGG | 0.504621 | 5:+3889487 | None:intergenic |
AAGTAAGCTGGATGATGGGA+AGG | 0.506469 | 5:-3887675 | MsaT025099.1:CDS |
ATAGCATCTCCTTTACTAGC+TGG | 0.506651 | 5:+3889365 | None:intergenic |
AGAGGATATGTCTGATAGAA+TGG | 0.507303 | 5:-3888907 | MsaT025099.1:CDS |
AGCTCCAGAGATGCTGGAGG+AGG | 0.508047 | 5:+3888801 | None:intergenic |
TGCAGATTTGCAAACGAGTA+GGG | 0.508803 | 5:+3890348 | None:intergenic |
TCCCTGAGAGGAGTTCCCTT+CGG | 0.510495 | 5:+3889113 | None:intergenic |
GATGATTCGACTTGAGAAGA+AGG | 0.511403 | 5:-3887648 | MsaT025099.1:CDS |
TGATAGAATGGCTAGAGAAA+AGG | 0.511992 | 5:-3888895 | MsaT025099.1:CDS |
TTGGCATGCAGAATAGCAGC+CGG | 0.514383 | 5:+3889614 | None:intergenic |
CAGAGAACACCAGCTAGTAA+AGG | 0.515217 | 5:-3889374 | MsaT025099.1:CDS |
ACGAGTAGCACTGCTACCTT+CGG | 0.515674 | 5:+3889457 | None:intergenic |
GTTGCAGAGGGAGTCAGCAG+TGG | 0.516056 | 5:+3889209 | None:intergenic |
AAGTGGTATGGCGCCGGCAA+GGG | 0.516862 | 5:-3889159 | MsaT025099.1:CDS |
TGCTTTCAGAAGCATGTGCT+CGG | 0.518933 | 5:-3889985 | MsaT025099.1:CDS |
GGTTATGCCATTGACCTTGT+GGG | 0.519574 | 5:-3889494 | MsaT025099.1:CDS |
CATTGCCTCACGAAGATACT+GGG | 0.519621 | 5:+3887856 | None:intergenic |
TGGGTGTCTGTGGATAATTA+GGG | 0.519886 | 5:+3889426 | None:intergenic |
TCAACAGGATCGGGTCGTGC+AGG | 0.520300 | 5:+3890031 | None:intergenic |
TTGATGTTGCTGATGAGGAT+AGG | 0.524642 | 5:-3889763 | MsaT025099.1:CDS |
TCGGCTTGCTCAATAGGGGT+TGG | 0.524733 | 5:+3888726 | None:intergenic |
TGAAAATTTGGCCAGGCTGA+GGG | 0.525084 | 5:-3889330 | MsaT025099.1:CDS |
GACCCTAGGAAATTGCGTCC+AGG | 0.525314 | 5:-3890082 | MsaT025099.1:CDS |
CAAGTTCTTCTATAGTAGTA+GGG | 0.528361 | 5:+3889720 | None:intergenic |
AGAGGAGGCCTCTTCTCAAA+CGG | 0.529206 | 5:+3889794 | None:intergenic |
TGAGAATGTGAGAAGTAAGC+TGG | 0.529343 | 5:-3887687 | MsaT025099.1:CDS |
GCTTGCTCAATAGGGGTTGG+TGG | 0.531592 | 5:+3888729 | None:intergenic |
CACTCAGTCTTCTTAATGGA+AGG | 0.532258 | 5:+3890289 | None:intergenic |
GCACTTCCAGGGGTTGCAGA+GGG | 0.532965 | 5:+3889197 | None:intergenic |
TCATCCATATCAACAGGATC+GGG | 0.534614 | 5:+3890022 | None:intergenic |
AGCATTGTCATGCTCCAGTA+AGG | 0.535038 | 5:+3888677 | None:intergenic |
ACCCTAGGAAATTGCGTCCA+GGG | 0.536757 | 5:-3890081 | MsaT025099.1:CDS |
GATCCAAACGAGCAGCAAAT+GGG | 0.542547 | 5:-3888611 | MsaT025099.1:CDS |
TTGCAGATTTGCAAACGAGT+AGG | 0.543492 | 5:+3890347 | None:intergenic |
AAGGACGATAACTATGATCC+TGG | 0.549150 | 5:-3890109 | MsaT025099.1:CDS |
AGAGAGAATTGAAGGCTGCT+GGG | 0.549517 | 5:-3889874 | MsaT025099.1:CDS |
GGGTTATGCCATTGACCTTG+TGG | 0.550781 | 5:-3889495 | MsaT025099.1:CDS |
TGATCGGAAATCTGAGGTGG+TGG | 0.551298 | 5:+3889542 | None:intergenic |
CCTTACTCCCAGAAGTGGTA+TGG | 0.551739 | 5:-3889171 | MsaT025099.1:CDS |
AGCCGACGAGATGATAAGAA+AGG | 0.552168 | 5:-3888709 | MsaT025099.1:CDS |
GAAAAGAAGGATTGATGTTG+AGG | 0.552508 | 5:-3889693 | MsaT025099.1:CDS |
GGTATGGCGCCGGCAAGGGA+TGG | 0.553823 | 5:-3889155 | MsaT025099.1:CDS |
AGGAGTTCTTAAAGGAGTCA+TGG | 0.554344 | 5:+3889397 | None:intergenic |
TCCCAGAAGTGGTATGGCGC+CGG | 0.554437 | 5:-3889165 | MsaT025099.1:CDS |
AACCATTAGTGCTACCATTG+TGG | 0.555517 | 5:-3890191 | MsaT025099.1:CDS |
TGAGAAAGCAAGACGTTGCA+AGG | 0.556741 | 5:-3889664 | MsaT025099.1:CDS |
GTCAATGGCATAACCCAACT+TGG | 0.557603 | 5:+3889502 | None:intergenic |
ATGATCCTGGTGATGACCCT+AGG | 0.560117 | 5:-3890096 | MsaT025099.1:CDS |
GGATTCGGATCAATCTCCCC+TGG | 0.561665 | 5:+3890064 | None:intergenic |
CCCCTGGACGCAATTTCCTA+GGG | 0.562986 | 5:+3890080 | None:intergenic |
ACGATCAAAAGTCATTCAAA+GGG | 0.567785 | 5:-3888835 | MsaT025099.1:CDS |
CAAAACAGTGTAAAGCTCGT+TGG | 0.569337 | 5:-3890327 | MsaT025099.1:CDS |
TTGCAGAGGGAGTCAGCAGT+GGG | 0.571318 | 5:+3889210 | None:intergenic |
ACTACTATAGAAGAACTTGA+GGG | 0.571318 | 5:-3889716 | MsaT025099.1:CDS |
TAAAGGAGATGCTATCATGA+TGG | 0.573963 | 5:-3889357 | MsaT025099.1:CDS |
TTACTAGCTGGTGTTCTCTG+AGG | 0.578802 | 5:+3889377 | None:intergenic |
TAGAGAAAAGGCAGAAGAAG+AGG | 0.579560 | 5:-3888883 | MsaT025099.1:CDS |
CCTTAACACAAGCGGCGTCA+AGG | 0.579579 | 5:+3890128 | None:intergenic |
TTGATAGACCATATGTGTTG+CGG | 0.580931 | 5:+3887756 | None:intergenic |
TCCGAAGGGAACTCCTCTCA+GGG | 0.580985 | 5:-3889114 | MsaT025099.1:CDS |
ATGGCTTGGTTGGGTGTCTG+TGG | 0.585691 | 5:+3889416 | None:intergenic |
AAGGTTACATTACTCACGCA+AGG | 0.586053 | 5:-3887629 | MsaT025099.1:CDS |
AGTAAGGCCTGCACTTCCAG+GGG | 0.586407 | 5:+3889187 | None:intergenic |
AACTCCTTGATAAGAGCTGA+CGG | 0.589304 | 5:-3888771 | MsaT025099.1:CDS |
CCTGATAATCTTCTATGACA+GGG | 0.589597 | 5:+3888580 | None:intergenic |
GTAAAGCTCGTTGGTATGAG+TGG | 0.590546 | 5:-3890318 | MsaT025099.1:CDS |
GACTGAGTGGACTCGAGAAG+AGG | 0.592125 | 5:-3890275 | MsaT025099.1:CDS |
TGCTTCAACAAAATCCTCGA+GGG | 0.592155 | 5:+3887817 | None:intergenic |
CTCCTTCGCAGTGTCTTGAA+CGG | 0.594673 | 5:-3890162 | MsaT025099.1:CDS |
TGCTGATGAGGATAGGGAGG+TGG | 0.595277 | 5:-3889756 | MsaT025099.1:CDS |
TGAGAAGTAAGCTGGATGAT+GGG | 0.598085 | 5:-3887679 | MsaT025099.1:CDS |
TACTACTATAGAAGAACTTG+AGG | 0.598439 | 5:-3889717 | MsaT025099.1:CDS |
AAAAGGCAGAAGAAGAGGCA+CGG | 0.599691 | 5:-3888878 | MsaT025099.1:CDS |
TTTGAGAAGAGGCCTCCTCT+GGG | 0.600719 | 5:-3889791 | MsaT025099.1:CDS |
CTAATGGTTCTCCACTGAGT+AGG | 0.603402 | 5:+3890220 | None:intergenic |
TGGAAGCTGAAAATTTGGCC+AGG | 0.607474 | 5:-3889337 | MsaT025099.1:CDS |
GCTCGGTTGGCTAACACGAA+AGG | 0.608258 | 5:-3889968 | MsaT025099.1:CDS |
TCTCAGACACCACTGTTAGG+AGG | 0.609284 | 5:-3889305 | MsaT025099.1:CDS |
AGCGGAGGAGGAAAAGGAGA+GGG | 0.609580 | 5:-3889838 | MsaT025099.1:CDS |
AGAAACAGCTTGAGGAAGCG+AGG | 0.613924 | 5:-3889919 | MsaT025099.1:CDS |
CAGCGGAGGAGGAAAAGGAG+AGG | 0.619802 | 5:-3889839 | MsaT025099.1:CDS |
CTGGGATTGATATAAGGCAG+CGG | 0.621106 | 5:-3889856 | MsaT025099.1:CDS |
ACTGTTAGGAGGAGAGAACC+CGG | 0.623267 | 5:-3889294 | MsaT025099.1:CDS |
GCAGGCCTTACTCCCAGAAG+TGG | 0.624004 | 5:-3889176 | MsaT025099.1:CDS |
CGAAGGAGTACGACCCACAA+TGG | 0.624367 | 5:+3890177 | None:intergenic |
CCCTAGGAAATTGCGTCCAG+GGG | 0.631019 | 5:-3890080 | MsaT025099.1:CDS |
CTCGTCGGCTTGCTCAATAG+GGG | 0.633774 | 5:+3888722 | None:intergenic |
AACAGCTTGAGGAAGCGAGG+AGG | 0.635219 | 5:-3889916 | MsaT025099.1:CDS |
GGCATGCAGAATAGCAGCCG+GGG | 0.639810 | 5:+3889616 | None:intergenic |
AATTTCCTAGGGTCATCACC+AGG | 0.641833 | 5:+3890091 | None:intergenic |
TGTTGCTGATGAGGATAGGG+AGG | 0.645550 | 5:-3889759 | MsaT025099.1:CDS |
AGAAGATGCTGAAGAGCCCG+AGG | 0.646686 | 5:-3888940 | MsaT025099.1:CDS |
CTACTATAGAAGAACTTGAG+GGG | 0.654103 | 5:-3889715 | MsaT025099.1:CDS |
GCCCGAGGAGAAGATTGAAG+AGG | 0.654306 | 5:-3888925 | MsaT025099.1:CDS |
ATAGTGCTAGACTCGAGCTA+CGG | 0.656913 | 5:-3889055 | MsaT025099.1:CDS |
TGAGTTCATCGCTGCCCACA+AGG | 0.658141 | 5:+3889480 | None:intergenic |
GTTATCGTCCTTAACACAAG+CGG | 0.659717 | 5:+3890120 | None:intergenic |
AATTCTTGATCGGAAATCTG+AGG | 0.665249 | 5:+3889536 | None:intergenic |
AGCTAGGGAGAAACAGCTTG+AGG | 0.665565 | 5:-3889927 | MsaT025099.1:CDS |
TACCGTTCAAGACACTGCGA+AGG | 0.666095 | 5:+3890160 | None:intergenic |
GGCAGCGATGAACTCACCGA+AGG | 0.666391 | 5:-3889473 | MsaT025099.1:CDS |
AGGTTACATTACTCACGCAA+GGG | 0.667391 | 5:-3887628 | MsaT025099.1:CDS |
CTAAGCTTACGCCTACTCAG+TGG | 0.671805 | 5:-3890231 | MsaT025099.1:CDS |
ACATCAAAATAACCCAGAGG+AGG | 0.672004 | 5:+3889779 | None:intergenic |
TCTTGATCGGAAATCTGAGG+TGG | 0.678038 | 5:+3889539 | None:intergenic |
GGGTTCTCTCCTCCTAACAG+TGG | 0.680208 | 5:+3889296 | None:intergenic |
CAATGCTAAGTATCCGCGTG+AGG | 0.680301 | 5:-3888661 | MsaT025099.1:CDS |
CTTCCATTAAGAAGACTGAG+TGG | 0.680364 | 5:-3890288 | MsaT025099.1:CDS |
TTATTTGCTATCTCCTCACG+CGG | 0.684948 | 5:+3888648 | None:intergenic |
TGAAGCCCAGTATCTTCGTG+AGG | 0.688109 | 5:-3887861 | MsaT025099.1:CDS |
GTGCTTCAACAAAATCCTCG+AGG | 0.688213 | 5:+3887816 | None:intergenic |
ATATGTAGCTCATCCCTGAG+AGG | 0.688581 | 5:+3889101 | None:intergenic |
AGTATCTTCGTGAGGCAATG+GGG | 0.691770 | 5:-3887853 | MsaT025099.1:CDS |
GGATTGATATAAGGCAGCGG+AGG | 0.699913 | 5:-3889853 | MsaT025099.1:CDS |
ATAAGCTCCAGAGATGCTGG+AGG | 0.701115 | 5:+3888798 | None:intergenic |
TGATATGGATGAGTATGAGA+AGG | 0.714958 | 5:-3890011 | MsaT025099.1:CDS |
TGTCATAGAAGATTATCAGG+AGG | 0.727087 | 5:-3888577 | MsaT025099.1:CDS |
GCATGAAAATGATTCCCTCG+AGG | 0.731393 | 5:-3887831 | MsaT025099.1:CDS |
CAAGGAATAAAATTGCAGAG+AGG | 0.745082 | 5:-3889646 | MsaT025099.1:CDS |
GCAACATCAAAATAACCCAG+AGG | 0.761769 | 5:+3889776 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 3887607 | 3890407 | 3887607 | ID=MsaG025099 |
Chr5 | mRNA | 3887607 | 3890407 | 3887607 | ID=MsaT025099.1;Parent=MsaG025099 |
Chr5 | exon | 3887607 | 3887903 | 3887607 | ID=MsaT025099.1.exon2;Parent=MsaT025099.1 |
Chr5 | CDS | 3887607 | 3887903 | 3887607 | ID=cds.MsaT025099.1;Parent=MsaT025099.1 |
Chr5 | exon | 3888563 | 3890407 | 3888563 | ID=MsaT025099.1.exon1;Parent=MsaT025099.1 |
Chr5 | CDS | 3888563 | 3890407 | 3888563 | ID=cds.MsaT025099.1;Parent=MsaT025099.1 |
Gene Sequence |
Protein sequence |