AlfalfaGEDB | MsaG025117

M. sativa ssp. caerulea / MsaG025117

KEGG: -
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF13426.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025117	XP_003611138.1	90.196	765	53	5	1	760	1	748	0.0	1362

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025117	sp\|Q9FPR3\|EDR1_ARATH	56.705	261	113	0	480	740	659	919	1.06e-96	323

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025117	tr\|G7KDG1\|G7KDG1_MEDTR	90.196	765	53	5	1	760	1	748	0.0	1362

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025117	MtrunA17_Chr5g0397931	81.307	765	66	10	1	760	1	693	0.0	1216
MsaG025117	MtrunA17_Chr2g0294351	60.448	268	106	0	481	748	457	724	2.38e-116	368
MsaG025117	MtrunA17_Chr2g0294351	41.441	111	63	2	67	176	88	197	2.22e-20	96.3
MsaG025117	MtrunA17_Chr4g0068411	63.178	258	95	0	478	735	448	705	9.59e-115	363
MsaG025117	MtrunA17_Chr4g0068411	42.609	115	65	1	62	176	87	200	1.71e-23	106
MsaG025117	MtrunA17_Chr1g0151541	58.687	259	107	0	484	742	657	915	2.77e-101	333
MsaG025117	MtrunA17_Chr6g0482711	54.448	281	123	1	467	742	632	912	5.47e-99	327
MsaG025117	MtrunA17_Chr1g0191171	57.196	271	110	1	480	744	679	949	1.37e-98	327
MsaG025117	MtrunA17_Chr8g0392871	52.740	292	138	0	460	751	709	1000	2.36e-97	324
MsaG025117	MtrunA17_Chr1g0179331	55.000	260	115	1	485	742	550	809	9.67e-93	308

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025117	AT4G23050.1	42.401	783	348	17	1	743	1	720	0.0	569
MsaG025117	AT4G23050.2	42.401	783	349	17	1	743	1	721	0.0	568
MsaG025117	AT5G49470.1	59.630	270	109	0	481	750	195	464	1.41e-118	366
MsaG025117	AT5G49470.7	61.069	262	102	0	481	742	355	616	2.37e-117	368
MsaG025117	AT5G49470.4	59.630	270	109	0	481	750	456	725	3.02e-116	368
MsaG025117	AT5G49470.4	30.220	182	109	7	12	178	9	187	2.55e-11	67.8
MsaG025117	AT5G49470.3	59.630	270	109	0	481	750	482	751	5.14e-116	368
MsaG025117	AT5G49470.3	39.831	118	69	2	62	178	97	213	4.24e-20	95.9
MsaG025117	AT3G06620.1	59.298	285	108	2	481	757	485	769	1.08e-113	362
MsaG025117	AT3G06620.1	32.812	128	84	2	51	177	89	215	2.07e-16	84.3

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Find 172 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCCTCTTTATGAGGA+CGG	0.610257	5:-4106697	MsaT025117.1:CDS
AAAAGAAAACACAACTGTCC+GGG	0.579472	5:-4105916	MsaT025117.1:CDS
AAACCGATGATGCAATTTAT+GGG	0.431240	5:+4106534	None:intergenic
AAACTCTGGCGGATCGGTGT+CGG	0.547885	5:-4108462	MsaT025117.1:CDS
AAAGCAGCAAGGGTTGCCGT+TGG	0.586036	5:-4105113	MsaT025117.1:CDS
AAAGGAAATTGTCCAGACCA+TGG	0.649921	5:+4106760	None:intergenic
AAATAGTGCGTATGAAACTC+TGG	0.549755	5:-4108476	MsaT025117.1:CDS
AAATTGTGTCATCTGTCTGC+CGG	0.598681	5:+4106115	None:intergenic
AACAAAGGGTCTTGGGGAAA+GGG	0.445926	5:+4105217	None:intergenic
AACTCAGCAGAAACTCTGTA+TGG	0.486241	5:-4106889	MsaT025117.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	4102356	4108518	4102356	ID=MsaG025117
Chr5	mRNA	4102356	4108518	4102356	ID=MsaT025117.1;Parent=MsaG025117
Chr5	exon	4102356	4102458	4102356	ID=MsaT025117.1.exon15;Parent=MsaT025117.1
Chr5	CDS	4102356	4102458	4102356	ID=cds.MsaT025117.1;Parent=MsaT025117.1
Chr5	exon	4102562	4102656	4102562	ID=MsaT025117.1.exon14;Parent=MsaT025117.1
Chr5	CDS	4102562	4102656	4102562	ID=cds.MsaT025117.1;Parent=MsaT025117.1
Chr5	exon	4103086	4103167	4103086	ID=MsaT025117.1.exon13;Parent=MsaT025117.1
Chr5	CDS	4103086	4103167	4103086	ID=cds.MsaT025117.1;Parent=MsaT025117.1
Chr5	exon	4103633	4103682	4103633	ID=MsaT025117.1.exon12;Parent=MsaT025117.1
Chr5	CDS	4103633	4103682	4103633	ID=cds.MsaT025117.1;Parent=MsaT025117.1
Chr5	exon	4103831	4103899	4103831	ID=MsaT025117.1.exon11;Parent=MsaT025117.1
Chr5	CDS	4103831	4103899	4103831	ID=cds.MsaT025117.1;Parent=MsaT025117.1
Chr5	exon	4103985	4104083	4103985	ID=MsaT025117.1.exon10;Parent=MsaT025117.1
Chr5	CDS	4103985	4104083	4103985	ID=cds.MsaT025117.1;Parent=MsaT025117.1
Chr5	exon	4104186	4104264	4104186	ID=MsaT025117.1.exon9;Parent=MsaT025117.1
Chr5	CDS	4104186	4104264	4104186	ID=cds.MsaT025117.1;Parent=MsaT025117.1
Chr5	exon	4104510	4104610	4104510	ID=MsaT025117.1.exon8;Parent=MsaT025117.1
Chr5	CDS	4104510	4104610	4104510	ID=cds.MsaT025117.1;Parent=MsaT025117.1
Chr5	exon	4104680	4104748	4104680	ID=MsaT025117.1.exon7;Parent=MsaT025117.1
Chr5	CDS	4104680	4104748	4104680	ID=cds.MsaT025117.1;Parent=MsaT025117.1
Chr5	exon	4104833	4104873	4104833	ID=MsaT025117.1.exon6;Parent=MsaT025117.1
Chr5	CDS	4104833	4104873	4104833	ID=cds.MsaT025117.1;Parent=MsaT025117.1
Chr5	exon	4104987	4105566	4104987	ID=MsaT025117.1.exon5;Parent=MsaT025117.1
Chr5	CDS	4104987	4105566	4104987	ID=cds.MsaT025117.1;Parent=MsaT025117.1
Chr5	exon	4105863	4105967	4105863	ID=MsaT025117.1.exon4;Parent=MsaT025117.1
Chr5	CDS	4105863	4105967	4105863	ID=cds.MsaT025117.1;Parent=MsaT025117.1
Chr5	exon	4106059	4106157	4106059	ID=MsaT025117.1.exon3;Parent=MsaT025117.1
Chr5	CDS	4106059	4106157	4106059	ID=cds.MsaT025117.1;Parent=MsaT025117.1
Chr5	exon	4106477	4106915	4106477	ID=MsaT025117.1.exon2;Parent=MsaT025117.1
Chr5	CDS	4106477	4106915	4106477	ID=cds.MsaT025117.1;Parent=MsaT025117.1
Chr5	exon	4108247	4108518	4108247	ID=MsaT025117.1.exon1;Parent=MsaT025117.1
Chr5	CDS	4108247	4108518	4108247	ID=cds.MsaT025117.1;Parent=MsaT025117.1

Gene Sequence

>MsaT025117.1

ATGGGTGGCGAGGTGAGAGAAAATAGTGCGTATGAAACTCTGGCGGATCGGTGTCGGAGGTTGGAAGAGCAACAAACCAAGCTGAGGGAGGAGTTCAATGAGGTGTTGCAGGAGAAGAAGAAACCCAAGGTCAAAGACAATGAAAATGAAGATTTAACCGCTGGTTATCTTTCTGGTTTCTTCTTCTCTCTAAGTCCTTATGCTAACGTTTTGAAATGCATGGGACATGCTGTTTATGTCCACGACGTGACCACCGGCCAGATCATATATTGGAATAACTCAGCAGAAACTCTGTATGGATGGAAGGCAAATGAAATAATTGGACAAAGATTAGCTGATTTCCTAGTTGCTGAAGAATATTATGGATCTCTACGAAGAATTCTACATCAGTTGATCACAGGAGTGCCATGGTCTGGACAATTTCCTTTGAAGAAGAGGTCTGGTGAAATATTTATGGCAATGGTAACAAAAACTCCTCTTTATGAGGACGGTAAGCTTGTTGGTGTTATCTCTATTTCTAGTGATGCGGTTTTAGTTAACTCTAAGGATTTCGACAAGCAAAGAACTTGCCAATCTTGTACGAATGACCAACCTGGAATTCAAAGGCCAAAAGGATTCATTGGCCTCCACGCCCATAAATTGCATCATCGGTTTCCAATCTGGTTCTCACAAGTTTCATCACTACTTCTCTTGACATTTTATTTCTTCATTGCATCAAAGTTTCTTCCACTCCGGCAGACAGATGACACAATTTCCAAGAACACTTCAACAGATGTAGATGATCAAGCACCAGGGAAACATAGCATTTATGAAACTGAACCTCGTTCCAGAAGTTACCAAAAAGAAAACACAACTGTCCGGGAGGCCATCAAGAAGGATGAGTCTACAACTGAAATTGGCCAGCCTTCTAAAATTGCAGCTAGAGTCCTTGCTAAGCTCCGAGGGGGAAGTGAAAAATGTAGGAAGTATACTAGAAATTTTAAAGACAATTGTGCAATTGATGATAGTTCAGGAAATAATAGAGTGAATAATGGAATTGATTTATCTGGAAGTTCAGTTGCATTAACGTCGCACCAGGATATTTTTAATGGAGAAGATAAAGAAGAAAAGCTCCAAAAATGTAATTCTTTATCTGTTGTGGATATAGCAGATGCAAAAATTTGTGCACAAAGAACTTCTAGTGTTTTCAAAAATAGTTCTGCTAAACCTTTCTCAGAGGACCGTTGTGAATGTTTTGGTTCTCCCTTTCCCCAAGACCCTTTGTTAAGATTACGCTGTACATTAGATCCAAAGAAATTGGAGCCAAAAGCTACGAATATGGTGATAGAAGATGAAATTGAAGTGCGAAAGCAGCAAGGGTTGCCGTTGGCGAGCTCGAAGGAGAGTATAAATGGCTGCACGAGTTCATCAAGCAAAGGGAAAAGTGAATCAAACTCTGTTGTAGAGCGTGAAATCCATTGGGAAGACCTTCAATTAAGAAGGGAGATTGGGCAAGGTTCTTATGCTGTTGTTTATCATGGAATTTGGAATGCATCGGATGTTGCTGTCAAGGTTTACTTTGGGAATGGATACGCAGAGGAGACTTTACGAAACCACAAAAAAGAGGTTGATATAATGAAAAGATTGAGACACCCAAATGTATTGCTTTTCATGGGAGCCATATATTCTCAGGAAAGGCATGCCATAGTGACAGAGTTATTACCTAGGGGAAGCCTTTTCAGAACACTTCATAAGAACAATCAAACATTAGACATCAAAAGGCATCTTAGAATGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATAGAGACCTAAAGTCTTCGAACCTGCTTGTTGATAAAAACTGGAATGTCAAGGTTGGAGACTTTGGCCTGTCCAAGTTGAAGGATGCAACTTTACTGACTACCAAATCTGGGAGAGGCACCCCTCAGTGGATGGCCCCTGAAGTCCTCCGCAGTGAACCTTCAAATGAAAAGTCTGATGTCTTCAGCTATGGTGTCGTTCTTTGGGAAATAATGACTCAATCTATTCCATGGAAAGATTTGAATTCCTTACAGGTTGTTGGAATAGTAGGCTTTATGGATAGAAGACTGGACCTGCCGGAGGGGCTTGACCCCCATGTAGCATCAATCATAAATGACTGTTGGCAAAGTGATCCGGAACAACGGCCATCATTTGAAGAGCTAGTGCAGAGAATGATGTTGATTGTCAGCAGAGTAACAGCTTTGTCATTGAACAGCATTGCAGAATCCTGA

Protein sequence

>MsaT025117.1

MGGEVRENSAYETLADRCRRLEEQQTKLREEFNEVLQEKKKPKVKDNENEDLTAGYLSGFFFSLSPYANVLKCMGHAVYVHDVTTGQIIYWNNSAETLYGWKANEIIGQRLADFLVAEEYYGSLRRILHQLITGVPWSGQFPLKKRSGEIFMAMVTKTPLYEDGKLVGVISISSDAVLVNSKDFDKQRTCQSCTNDQPGIQRPKGFIGLHAHKLHHRFPIWFSQVSSLLLLTFYFFIASKFLPLRQTDDTISKNTSTDVDDQAPGKHSIYETEPRSRSYQKENTTVREAIKKDESTTEIGQPSKIAARVLAKLRGGSEKCRKYTRNFKDNCAIDDSSGNNRVNNGIDLSGSSVALTSHQDIFNGEDKEEKLQKCNSLSVVDIADAKICAQRTSSVFKNSSAKPFSEDRCECFGSPFPQDPLLRLRCTLDPKKLEPKATNMVIEDEIEVRKQQGLPLASSKESINGCTSSSSKGKSESNSVVEREIHWEDLQLRREIGQGSYAVVYHGIWNASDVAVKVYFGNGYAEETLRNHKKEVDIMKRLRHPNVLLFMGAIYSQERHAIVTELLPRGSLFRTLHKNNQTLDIKRHLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWNVKVGDFGLSKLKDATLLTTKSGRGTPQWMAPEVLRSEPSNEKSDVFSYGVVLWEIMTQSIPWKDLNSLQVVGIVGFMDRRLDLPEGLDPHVASIINDCWQSDPEQRPSFEELVQRMMLIVSRVTALSLNSIAES*