AlfalfaGEDB | MsaG025251

M. sativa ssp. caerulea / MsaG025251

KEGG: K09338
GO: GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010016 GO:0010017 GO:0010022 GO:0010033 GO:0010073 GO:0010154 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010582 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071840 GO:0080090 GO:0080127 GO:0090567 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905328 GO:2000112 GO:2000113 GO:2001141
PFAM: PF04618.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025251	KEH27466.1	59.398	133	20	1	9	107	56	188	6.65e-40	141

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025251	tr\|A0A072UDF7\|A0A072UDF7_MEDTR	59.398	133	20	1	9	107	56	188	3.17e-40	141

TFs/TRs:

Gene ID	Type	Classification
MsaG025251	TF	HB-other

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025251	MtrunA17_Chr5g0399491	59.848	132	19	1	9	106	56	187	8.25e-43	141
MsaG025251	MtrunA17_Chr4g0055851	48.120	133	30	6	9	106	43	171	4.53e-20	82.0
MsaG025251	MtrunA17_Chr8g0335131	37.594	133	34	4	23	106	65	197	5.19e-12	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025251	AT4G17460.1	40.458	131	31	3	23	106	56	186	2.08e-16	72.8

Find 23 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGTATTGAAAAGGAAGATTT+TGG	0.211828	5:+5758139	MsaT025251.1:CDS
AAAGCAGACTGTTGGAAGTT+TGG	0.310732	5:+5758958	MsaT025251.1:CDS
CGATGAATCGAGTTACCTTC+TGG	0.337157	5:+5758571	MsaT025251.1:CDS
ATTGGCACTTGCAAAACAAT+TGG	0.337338	5:+5758929	MsaT025251.1:CDS
AAGAAGGAAAGAGAAGTTAC+AGG	0.389370	5:+5758661	MsaT025251.1:CDS
TTTACATGCAGATCGGGATT+CGG	0.433835	5:+5758505	MsaT025251.1:intron
ACACTTGAAACGGTGCTGTT+TGG	0.443597	5:-5758629	None:intergenic
TTGGCACTTGCAAAACAATT+GGG	0.452760	5:+5758930	MsaT025251.1:CDS
TTTACCACTCACACTTGAAA+CGG	0.484021	5:-5758639	None:intergenic
GATGAATCGAGTTACCTTCT+GGG	0.506572	5:+5758572	MsaT025251.1:CDS
GGGACTTCAAAGCAGACTGT+TGG	0.521714	5:+5758950	MsaT025251.1:CDS
AACTCGATTCATCGATTCCT+CGG	0.525093	5:-5758562	None:intergenic
TCGATTCCTCGGAGAAGTAA+AGG	0.525636	5:-5758551	None:intergenic
CAAGTGTGAGTGGTAAAAGA+AGG	0.534931	5:+5758645	MsaT025251.1:CDS
ATGGAAAGAGATTGTTCAAG+AGG	0.555724	5:+5758698	MsaT025251.1:CDS
GGTTTCAAAATCGTAGAGCA+AGG	0.583437	5:+5758979	MsaT025251.1:CDS
GCTGATTGTGAAGAAGAAGC+AGG	0.600333	5:+5758596	MsaT025251.1:CDS
TGGAAAGAGATTGTTCAAGA+GGG	0.616887	5:+5758699	MsaT025251.1:CDS
CTTCACAATCAGCACCCAGA+AGG	0.634945	5:-5758586	None:intergenic
AGCACCGTTTCAAGTGTGAG+TGG	0.674395	5:+5758635	MsaT025251.1:CDS
AGACATGCAGAATCGAAGAA+CGG	0.674956	5:+5758528	MsaT025251.1:CDS
GAACGGCCTTTACTTCTCCG+AGG	0.691005	5:+5758545	MsaT025251.1:CDS
ACAGGTAGAAGATCTTGACA+TGG	0.729649	5:+5758679	MsaT025251.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	5758136	5759004	5758136	ID=MsaG025251
Chr5	mRNA	5758136	5759004	5758136	ID=MsaT025251.1;Parent=MsaG025251
Chr5	exon	5758136	5758160	5758136	ID=MsaT025251.1.exon1;Parent=MsaT025251.1
Chr5	CDS	5758136	5758160	5758136	ID=cds.MsaT025251.1;Parent=MsaT025251.1
Chr5	exon	5758516	5758727	5758516	ID=MsaT025251.1.exon2;Parent=MsaT025251.1
Chr5	CDS	5758516	5758727	5758516	ID=cds.MsaT025251.1;Parent=MsaT025251.1
Chr5	exon	5758921	5759004	5758921	ID=MsaT025251.1.exon3;Parent=MsaT025251.1
Chr5	CDS	5758921	5759004	5758921	ID=cds.MsaT025251.1;Parent=MsaT025251.1

Gene Sequence	>MsaT025251.1 ATGAGTATTGAAAAGGAAGATTTTGATCGGGATTCGGAGACATGCAGAATCGAAGAACGGCCTTTACTTCTCCGAGGAATCGATGAATCGAGTTACCTTCTGGGTGCTGATTGTGAAGAAGAAGCAGGAGTTTCATCACCAAACAGCACCGTTTCAAGTGTGAGTGGTAAAAGAAGGAAAGAGAAGTTACAGGTAGAAGATCTTGACATGGAAAGAGATTGTTCAAGAGGGAAATCAAAACAAAAATTGGCACTTGCAAAACAATTGGGACTTCAAAGCAGACTGTTGGAAGTTTGGTTTCAAAATCGTAGAGCAAGGTTT
Protein sequence	>MsaT025251.1 MSIEKEDFDRDSETCRIEERPLLLRGIDESSYLLGADCEEEAGVSSPNSTVSSVSGKRRKEKLQVEDLDMERDCSRGKSKQKLALAKQLGLQSRLLEVWFQNRRARF