AlfalfaGEDB | MsaG025254

M. sativa ssp. caerulea / MsaG025254

KEGG: K09338
GO: GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010016 GO:0010017 GO:0010022 GO:0010033 GO:0010073 GO:0010154 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010582 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071840 GO:0080090 GO:0080127 GO:0090567 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905328 GO:2000112 GO:2000113 GO:2001141
PFAM: PF04618.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025254	XP_003611347.1	98.311	296	5	0	1	296	1	296	0.0	598

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025254	sp\|Q05466\|HAT4_ARATH	65.101	298	88	7	1	296	1	284	5.54e-108	318

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025254	tr\|B7FJ62\|B7FJ62_MEDTR	98.311	296	5	0	1	296	1	296	0.0	598

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG025254	TF	HB-HD-ZIP

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003998	MsaG025254	0.804593	3.385504e-49	5.084255e-47
MsaG004534	MsaG025254	0.801120	1.751920e-48	2.429313e-46
MsaG006994	MsaG025254	0.850473	3.163836e-60	1.742811e-57
MsaG025254	MsaG040736	0.811834	9.856278e-51	1.760405e-48
MsaG025254	MsaG045689	0.811735	1.035435e-50	1.844848e-48

Showing 1 to 5 of 5 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025254	MtrunA17_Chr5g0399491	98.311	296	5	0	1	296	1	296	0.0	598
MsaG025254	MtrunA17_Chr4g0055851	72.333	300	54	9	1	293	2	279	2.57e-138	392
MsaG025254	MtrunA17_Chr8g0335131	56.958	309	101	10	4	288	3	303	3.00e-94	281
MsaG025254	MtrunA17_Chr7g0258831	64.516	186	58	4	72	250	89	273	9.58e-68	213
MsaG025254	MtrunA17_Chr1g0175651	60.204	196	54	4	71	251	82	268	1.13e-66	210
MsaG025254	MtrunA17_Chr2g0308611	73.026	152	35	4	112	260	175	323	1.17e-65	209
MsaG025254	MtrunA17_Chr4g0054421	78.049	123	26	1	127	249	118	239	5.60e-61	194
MsaG025254	MtrunA17_Chr5g0400781	65.972	144	46	2	127	268	114	256	4.47e-60	192
MsaG025254	MtrunA17_Chr1g0151971	51.667	180	73	5	96	263	88	265	1.19e-51	171
MsaG025254	MtrunA17_Chr4g0044091	62.097	124	42	1	130	248	59	182	1.93e-45	152

Showing 1 to 10 of 29 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025254	AT4G16780.1	65.101	298	88	7	1	296	1	284	5.63e-109	318
MsaG025254	AT5G47370.1	59.936	312	80	13	1	296	1	283	7.82e-107	312
MsaG025254	AT4G17460.1	59.032	310	85	11	1	296	1	282	2.93e-105	308
MsaG025254	AT3G60390.1	59.060	298	84	14	17	287	23	309	1.33e-91	275
MsaG025254	AT2G44910.1	53.165	316	115	12	4	288	3	316	3.19e-84	256
MsaG025254	AT5G06710.1	61.421	197	64	6	91	277	135	329	2.91e-67	213
MsaG025254	AT4G37790.1	59.358	187	57	5	105	273	86	271	3.56e-62	198
MsaG025254	AT2G22800.1	72.308	130	32	2	123	249	97	225	2.69e-58	188
MsaG025254	AT2G01430.1	52.299	174	65	4	92	256	95	259	5.51e-44	151
MsaG025254	AT1G70920.1	60.976	123	37	2	135	257	68	179	8.85e-38	133

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

Find 63 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGCAACACGCTCACAAG+AGG	0.612400	5:-5807126	None:intergenic
AAGAAGACGCTGAAACTTCA+AGG	0.402562	5:+5806382	MsaT025254.1:CDS
AAGATGCTGTGAGAATCTAA+CGG	0.718794	5:+5806998	MsaT025254.1:CDS
ACACTTGAAACGGTGCTGTT+TGG	0.443597	5:-5806279	None:intergenic
ACAGCAACACGCTCACAAGA+GGG	0.586849	5:-5807125	None:intergenic
ACCGATTCACATCGATTCCT+CGG	0.556594	5:-5806212	None:intergenic
ACGACGCGTGGCAGCATCAA+CGG	0.548952	5:-5807159	None:intergenic
ACGCTCACAAGAGGGGCACA+TGG	0.624285	5:-5807117	None:intergenic
AGAAGCGAAAGAGAAGTTAC+AGG	0.494456	5:+5806312	MsaT025254.1:CDS
AGACATGCAGAATCGAAGAA+CGG	0.674956	5:+5806178	MsaT025254.1:CDS

Showing 1 to 10 of 63 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	5805784	5807286	5805784	ID=MsaG025254
Chr5	mRNA	5805784	5807286	5805784	ID=MsaT025254.1;Parent=MsaG025254
Chr5	exon	5805784	5805949	5805784	ID=MsaT025254.1.exon1;Parent=MsaT025254.1
Chr5	CDS	5805784	5805949	5805784	ID=cds.MsaT025254.1;Parent=MsaT025254.1
Chr5	exon	5806166	5806479	5806166	ID=MsaT025254.1.exon2;Parent=MsaT025254.1
Chr5	CDS	5806166	5806479	5806166	ID=cds.MsaT025254.1;Parent=MsaT025254.1
Chr5	exon	5806567	5806646	5806567	ID=MsaT025254.1.exon3;Parent=MsaT025254.1
Chr5	CDS	5806567	5806646	5806567	ID=cds.MsaT025254.1;Parent=MsaT025254.1
Chr5	exon	5806956	5807286	5806956	ID=MsaT025254.1.exon4;Parent=MsaT025254.1
Chr5	CDS	5806956	5807286	5806956	ID=cds.MsaT025254.1;Parent=MsaT025254.1

Gene Sequence

>MsaT025254.1

ATGAGTATTGAAAAGGAAGATTTTGGTTTGAGCCTAAGTTTGAGCTTCCCTCAAAATCCACCAAATCCTCAATACCTTAATCTTATGTCTTCTTCAACTCATTCCTCTTCTCCTTCTACTTTCAATCCTCAAAAACCTTCTTGGAATGATGTTTTTACTTCTTCAGATCGGGATTCGGAGACATGCAGAATCGAAGAACGGCCTTTACTTCTCCGAGGAATCGATGTGAATCGGTTACCTTCTGGTGCTGATTGTGAAGAAGAAGCAGGAGTTTCATCACCAAACAGCACCGTTTCAAGTGTGAGTGGTAAAAGAAGCGAAAGAGAAGTTACAGGTGAAGATCTTGACATGGAAAGAGATTGTTCAAGAGGAATCAGTGATGAAGAAGACGCTGAAACTTCAAGGAAAAAACTTAGACTCACCAAAGACCAATCAATTATTCTAGAAGAGAGTTTCAAAGAACACAACACTCTTAACCCCAAACAAAAATTGGCACTTGCAAAACAATTGGGACTTCGTGCTAGACAAGTTGAAGTTTGGTTTCAAAATCGTAGAGCAAGGACTAAGTTGAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAAAGATGCTGTGAGAATCTAACGGATGAAAATAGACGGTTACAAAAGGAAGTGCAAGAGTTAAGAGCATTGAAACTTTCCCCACAATTCTACATGCAAATGACACCACCAACAACTCTTACCATGTGCCCCTCTTGTGAGCGTGTTGCTGTTCCATCATCTGCCGTTGATGCTGCCACGCGTCGTCATCCTATGGCTCCAAATCACCCACGTCCATTTCCTGTGGGACCATGGGCCACAGCTGCTCCTATCCAACATAGGACCTTTGATACACTCCGTCCTAGATCTTAA

Protein sequence

>MsaT025254.1

MSIEKEDFGLSLSLSFPQNPPNPQYLNLMSSSTHSSSPSTFNPQKPSWNDVFTSSDRDSETCRIEERPLLLRGIDVNRLPSGADCEEEAGVSSPNSTVSSVSGKRSEREVTGEDLDMERDCSRGISDEEDAETSRKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRRHPMAPNHPRPFPVGPWATAAPIQHRTFDTLRPRS*