AlfalfaGEDB | MsaG025294

M. sativa ssp. caerulea / MsaG025294

KEGG: K14498
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025294	XP_039690494.1	95.882	340	14	0	1	340	1	340	0.0	676

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025294	sp\|A9TF79\|SRK2A_PHYPA	76.774	310	70	1	2	311	8	315	0.0	511

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025294	tr\|G7JYM2\|G7JYM2_MEDTR	95.294	340	14	1	1	340	1	338	0.0	667

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025294	MtrunA17_Chr5g0399911	92.351	353	14	1	1	340	1	353	0.0	666
MsaG025294	MtrunA17_Chr4g0055451	76.471	340	71	4	3	337	2	337	0.0	536
MsaG025294	MtrunA17_Chr2g0277501	72.699	326	82	2	4	329	2	320	8.56e-178	496
MsaG025294	MtrunA17_Chr4g0045371	69.027	339	93	3	2	334	19	351	3.30e-177	495
MsaG025294	MtrunA17_Chr8g0385281	76.333	300	70	1	4	303	3	301	5.63e-177	494
MsaG025294	MtrunA17_Chr8g0381821	73.567	314	80	1	4	317	2	312	7.36e-177	493
MsaG025294	MtrunA17_Chr3g0131061	75.667	300	72	1	4	303	2	300	3.61e-175	489
MsaG025294	MtrunA17_Chr1g0162301	73.115	305	76	2	2	304	20	320	4.82e-172	482
MsaG025294	MtrunA17_Chr8g0374571	66.066	333	103	4	2	334	19	341	4.22e-168	472
MsaG025294	MtrunA17_Chr3g0123791	71.854	302	84	1	3	303	2	303	4.39e-167	469

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025294	AT1G10940.1	76.000	300	71	1	4	303	2	300	6.66e-176	492
MsaG025294	AT4G33950.2	72.581	310	81	2	2	309	17	324	4.94e-175	489
MsaG025294	AT4G33950.1	72.581	310	81	2	2	309	17	324	7.96e-175	489
MsaG025294	AT5G63650.1	73.377	308	81	1	4	311	2	308	4.71e-174	488
MsaG025294	AT5G08590.1	74.000	300	76	1	4	303	2	299	3.28e-173	485
MsaG025294	AT1G10940.2	74.026	308	71	2	4	303	2	308	6.29e-173	485
MsaG025294	AT1G60940.1	74.333	300	76	1	4	303	2	300	2.76e-171	480
MsaG025294	AT1G60940.2	74.333	300	76	1	4	303	2	300	2.76e-171	480
MsaG025294	AT5G66880.1	70.779	308	88	2	2	309	18	323	7.29e-168	472
MsaG025294	AT5G66880.2	70.779	308	88	2	2	309	18	323	7.29e-168	472

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Find 86 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAATTAAGTTGGACT+TGG	0.449550	5:+6213517	None:intergenic
AAACTTTGGAGTGGCTAGGT+TGG	0.550074	5:-6217880	MsaT025294.1:CDS
AAAGTGTGGAAGAAATCATG+CGG	0.656102	5:-6213653	MsaT025294.1:CDS
AAATATTATCAGGTTCAAAG+AGG	0.640987	5:-6216588	MsaT025294.1:intron
AAATTTCAGAGCGAATATTA+CGG	0.466225	5:-6214610	MsaT025294.1:intron
AAGTGTGGAAGAAATCATGC+GGG	0.653176	5:-6213652	MsaT025294.1:CDS
AATATTTACCTTAGCTGGAT+TGG	0.390762	5:+6214402	None:intergenic
AATGGTGGAACAAGCTCATT+GGG	0.454775	5:-6213594	MsaT025294.1:CDS
ACACATATCTGCAGATTGTA+GGG	0.539658	5:-6214449	MsaT025294.1:CDS
ACCTCTGGTGCAATATATGC+AGG	0.524189	5:+6215718	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	6213521	6217946	6213521	ID=MsaG025294
Chr5	mRNA	6213521	6217946	6213521	ID=MsaT025294.1;Parent=MsaG025294
Chr5	exon	6213521	6213796	6213521	ID=MsaT025294.1.exon9;Parent=MsaT025294.1
Chr5	CDS	6213521	6213796	6213521	ID=cds.MsaT025294.1;Parent=MsaT025294.1
Chr5	exon	6214411	6214509	6214411	ID=MsaT025294.1.exon8;Parent=MsaT025294.1
Chr5	CDS	6214411	6214509	6214411	ID=cds.MsaT025294.1;Parent=MsaT025294.1
Chr5	exon	6214611	6214715	6214611	ID=MsaT025294.1.exon7;Parent=MsaT025294.1
Chr5	CDS	6214611	6214715	6214611	ID=cds.MsaT025294.1;Parent=MsaT025294.1
Chr5	exon	6215690	6215782	6215690	ID=MsaT025294.1.exon6;Parent=MsaT025294.1
Chr5	CDS	6215690	6215782	6215690	ID=cds.MsaT025294.1;Parent=MsaT025294.1
Chr5	exon	6215881	6215973	6215881	ID=MsaT025294.1.exon5;Parent=MsaT025294.1
Chr5	CDS	6215881	6215973	6215881	ID=cds.MsaT025294.1;Parent=MsaT025294.1
Chr5	exon	6216073	6216126	6216073	ID=MsaT025294.1.exon4;Parent=MsaT025294.1
Chr5	CDS	6216073	6216126	6216073	ID=cds.MsaT025294.1;Parent=MsaT025294.1
Chr5	exon	6216408	6216509	6216408	ID=MsaT025294.1.exon3;Parent=MsaT025294.1
Chr5	CDS	6216408	6216509	6216408	ID=cds.MsaT025294.1;Parent=MsaT025294.1
Chr5	exon	6216589	6216663	6216589	ID=MsaT025294.1.exon2;Parent=MsaT025294.1
Chr5	CDS	6216589	6216663	6216589	ID=cds.MsaT025294.1;Parent=MsaT025294.1
Chr5	exon	6217821	6217946	6217821	ID=MsaT025294.1.exon1;Parent=MsaT025294.1
Chr5	CDS	6217821	6217946	6217821	ID=cds.MsaT025294.1;Parent=MsaT025294.1

Gene Sequence

>MsaT025294.1

ATGGAGGAGGAAAGATACGAGATATTGAAGGACCTTGGTTCTGGAAACTTTGGAGTGGCTAGGTTGGCTAAAGACAAGAAGACAGGAGAACTTGTTGCTATCAAATACATTGAAAGAGGATATAAGATTGATGAGAATGTTCAAAGGGAGATAGTTAACCATCGATCTTTAAGGCATCCAAATATTATCAGGTTCAAAGAGGTATTTGTGACACCTACTCATTTGGCTATTGTCCTGGAGTATGCTGCTGGTGGTGAACTTTTTGACAGGATAGCCTCTGCTGGTCGACTCAGTGAAGATGAGGCAAGATTTTTCTTCCAGCAACTGATATCTGGAGTTAGCTACTGTCATTCCATGGAAATTTGTCATAGAGATCTGAAATTGGAGAACACTTTATTGGATGGAAGTCCAGCTCCTCGAGTTAAAATTTGTGACTTTGGTTTCTCCAAGTCGTCTTTACTCCACTCTCAGCCCAAATCAACAGTTGGAACTCCTGCATATATTGCACCAGAGGTTTTGTCTAGAAGAGAGTATGATGGGAAGATTGCAGATGTTTGGTCATGTGGTGTGACTCTTTATGTCATGTTAGTTGGATCATACCCTTTTGAAGATCCAGAAGATCCTAGAAATTTCAGAGCGAATATTACGAAAATAATGAATGTTCAATACTCGATACCTGACTATGTACACATATCTGCAGATTGTAGGGAACTTATCTCTCGTATTTTTGTTGCCAATCCAGCTAAGAGGATCACAATCTCAGAGATAAGACAACACCCTTGGTTTTGGAAGAACATGCCCAGAGAGATAGTTGAGGCTCAAAGAAAAGGTTACAATGAAATACAGATAGACCAATTACCAAGCCAACAAAGTGTGGAAGAAATCATGCGGGTCGTAGGAGAAGCAAGGATATCAGGGCTGGAAAACAATGGTGGAACAAGCTCATTGGGTGTTAACGTTGTTAAATGGATTGAAGAGGAAGTTGATGGTAGTGATGACTTTGTCCAAGTCCAACTTAATTAA

Protein sequence

>MsaT025294.1

MEEERYEILKDLGSGNFGVARLAKDKKTGELVAIKYIERGYKIDENVQREIVNHRSLRHPNIIRFKEVFVTPTHLAIVLEYAAGGELFDRIASAGRLSEDEARFFFQQLISGVSYCHSMEICHRDLKLENTLLDGSPAPRVKICDFGFSKSSLLHSQPKSTVGTPAYIAPEVLSRREYDGKIADVWSCGVTLYVMLVGSYPFEDPEDPRNFRANITKIMNVQYSIPDYVHISADCRELISRIFVANPAKRITISEIRQHPWFWKNMPREIVEAQRKGYNEIQIDQLPSQQSVEEIMRVVGEARISGLENNGGTSSLGVNVVKWIEEEVDGSDDFVQVQLN*