AlfalfaGEDB | MsaG025364

M. sativa ssp. caerulea / MsaG025364

KEGG: K09338
GO: GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025364	XP_003611524.1	97.059	272	5	3	1	271	1	270	0.0	528

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025364	sp\|P46604\|HAT22_ARATH	60.690	290	83	9	1	271	1	278	5.74e-92	276

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025364	tr\|G7K156\|G7K156_MEDTR	97.059	272	5	3	1	271	1	270	0.0	528

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TFs/TRs:

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Gene ID	Type	Classification
MsaG025364	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025364	MtrunA17_Chr5g0400781	97.059	272	5	3	1	271	1	270	0.0	528
MsaG025364	MtrunA17_Chr4g0054421	64.360	289	67	9	1	271	1	271	3.11e-98	288
MsaG025364	MtrunA17_Chr2g0308611	70.548	146	40	2	94	237	169	313	1.68e-64	205
MsaG025364	MtrunA17_Chr1g0175651	72.388	134	36	1	104	237	135	267	1.84e-63	201
MsaG025364	MtrunA17_Chr1g0151971	57.868	197	73	6	73	266	83	272	2.61e-63	200
MsaG025364	MtrunA17_Chr5g0399491	59.067	193	66	5	47	237	69	250	1.11e-62	199
MsaG025364	MtrunA17_Chr7g0258831	70.455	132	39	0	106	237	142	273	1.21e-62	199
MsaG025364	MtrunA17_Chr4g0055851	64.242	165	48	5	74	237	80	234	3.67e-61	194
MsaG025364	MtrunA17_Chr8g0335131	61.765	170	55	3	74	235	91	258	5.39e-60	192
MsaG025364	MtrunA17_Chr3g0135331	57.222	180	67	4	93	266	117	292	1.39e-50	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025364	AT4G37790.1	60.690	290	83	9	1	271	1	278	5.83e-93	276
MsaG025364	AT2G22800.1	57.093	289	91	8	1	271	1	274	1.14e-83	252
MsaG025364	AT5G06710.1	68.707	147	42	2	96	240	162	306	2.52e-65	207
MsaG025364	AT3G60390.1	59.091	176	58	3	74	235	99	274	8.47e-60	192
MsaG025364	AT4G16780.1	66.901	142	45	2	96	236	102	242	1.46e-59	191
MsaG025364	AT2G44910.1	54.822	197	76	4	49	236	84	276	2.78e-57	186
MsaG025364	AT5G47370.1	51.659	211	73	8	74	271	72	266	8.70e-56	181
MsaG025364	AT4G17460.1	55.747	174	66	5	74	237	77	249	3.18e-52	172
MsaG025364	AT2G01430.1	55.556	126	54	1	115	240	130	253	7.36e-41	142
MsaG025364	AT1G70920.2	51.852	135	54	2	116	246	27	154	2.28e-36	127

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Find 66 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGCTCCCAAAGGTTA+TGG	0.433046	5:-7371003	MsaT025364.1:CDS
AAACATTAACAGACGAAAAT+AGG	0.283618	5:-7369736	MsaT025364.1:CDS
AAAGCTGAAACAAACAGAGG+TGG	0.651647	5:-7369786	MsaT025364.1:CDS
AACAAAGCTGAAACAAACAG+AGG	0.748355	5:-7369789	MsaT025364.1:CDS
AACCATACTTCAACTTGTCG+CGG	0.615090	5:+7370572	None:intergenic
AACGAGCCATCCTTAACGTT+AGG	0.533980	5:-7371060	MsaT025364.1:CDS
AAGAAGAAGTAGAAGAAGAG+AGG	0.435022	5:-7370882	MsaT025364.1:CDS
AAGCAATAGTGATTGTTCTT+TGG	0.306534	5:+7370795	None:intergenic
AAGTTCCTCACCATAACCTT+TGG	0.418493	5:+7370993	None:intergenic
AATCACAAACAAGCTCCCAA+AGG	0.673939	5:-7371009	MsaT025364.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	7369520	7371202	7369520	ID=MsaG025364
Chr5	mRNA	7369520	7371202	7369520	ID=MsaT025364.1;Parent=MsaG025364
Chr5	exon	7369520	7369811	7369520	ID=MsaT025364.1.exon3;Parent=MsaT025364.1
Chr5	CDS	7369520	7369811	7369520	ID=cds.MsaT025364.1;Parent=MsaT025364.1
Chr5	exon	7370554	7370633	7370554	ID=MsaT025364.1.exon2;Parent=MsaT025364.1
Chr5	CDS	7370554	7370633	7370554	ID=cds.MsaT025364.1;Parent=MsaT025364.1
Chr5	exon	7370759	7371202	7370759	ID=MsaT025364.1.exon1;Parent=MsaT025364.1
Chr5	CDS	7370759	7371202	7370759	ID=cds.MsaT025364.1;Parent=MsaT025364.1

Gene Sequence

>MsaT025364.1

ATGGGTCTTAATAATGATCAAGATTCTCTTCACCTTGTTCTAGGTTTATCTTTGAATACTTCTACTACTCCAAAGGAAATAACTACCACCACCACCACCATGAATCCCTATTCCACCTCCAACGAGCCATCCTTAACGTTAGGACTCTCTGGTGAGAGTTATAACCGTACAAATCACAAACAAGCTCCCAAAGGTTATGGTGAGGAACTTTGTAGACAAACTTCATCACCTCATAGTGTTGTTAATTCATCTTTCTCAAGTGGGAGAGTGCTGCAAGTGAAGAGGGAGAGAGATGAAGAAGAAGAAGTAGAAGAAGAGAGGGTTTCTTCAAGAGTTAGTGATGAAGATGAAGATGCTACAAATGCTAGAAAGAAACTTAGGCTTACCAAAGAACAATCACTATTGCTTGAAGAAAGCTTCAAACTACATAGCACTCTCAATCCTAAACAAAAACAAGCTTTAGCGAGACAGTTGAATCTAAGGCCGCGACAAGTTGAAGTATGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAACAAACAGAGGTGGATTGCGAGTTCTTGAAGAAATGTTGTGAAACATTAACAGACGAAAATAGGAGGCTCAAAAAGGAGTTGCAAGAGTTGAAATCATTGAAAGTAGCACAACCTTTGTACATGCCTATGCCTGCAGCCACCCTCTCCATCTGCCCTTCTTGCGAAAGACTCGGCCGCGTCGCCGACGGTGGTGGTGGTTCTAATAAAATCACTGCCTTCACCATGGCTCCAAATACTCATTTCTACAATCCTTTCAACAATCCTTCTGCAGCATGTTAA

Protein sequence

>MsaT025364.1

MGLNNDQDSLHLVLGLSLNTSTTPKEITTTTTTMNPYSTSNEPSLTLGLSGESYNRTNHKQAPKGYGEELCRQTSSPHSVVNSSFSSGRVLQVKRERDEEEEVEEERVSSRVSDEDEDATNARKKLRLTKEQSLLLEESFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKSLKVAQPLYMPMPAATLSICPSCERLGRVADGGGGSNKITAFTMAPNTHFYNPFNNPSAAC*