AlfalfaGEDB | MsaG025403

M. sativa ssp. caerulea / MsaG025403

KEGG: -
GO: GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0014070 GO:0016020 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031090 GO:0031323 GO:0031326 GO:0031461 GO:0031625 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141
PFAM: PF00651.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025403	AES94554.2	97.554	368	9	0	3	370	47	414	0.0	754

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025403	sp\|Q9FJX5\|BT4_ARATH	65.000	360	114	2	11	369	20	368	9.52e-177	498

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025403	tr\|G7K3T4\|G7K3T4_MEDTR	97.554	368	9	0	3	370	47	414	0.0	754

TFs/TRs:

Gene ID	Type	Classification
MsaG025403	TR	TAZ

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025403	MtrunA17_Chr5g0401281	97.554	368	9	0	3	370	8	375	0.0	753
MsaG025403	MtrunA17_Chr4g0058071	44.781	297	159	5	63	355	17	312	5.75e-83	256
MsaG025403	MtrunA17_Chr3g0116501	38.725	204	124	1	131	334	1	203	1.46e-50	168
MsaG025403	MtrunA17_Chr4g0000031	34.426	122	66	4	243	364	1598	1705	3.63e-15	77.4
MsaG025403	MtrunA17_Chr3g0125321	29.412	153	101	3	76	226	97	244	5.51e-13	68.2
MsaG025403	MtrunA17_Chr5g0438991	38.356	73	44	1	273	345	886	957	1.30e-12	69.3
MsaG025403	MtrunA17_Chr3g0138411	39.506	81	47	2	274	353	1119	1198	4.42e-12	67.8
MsaG025403	MtrunA17_Chr6g0456861	38.889	72	43	1	274	345	692	762	6.86e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025403	AT5G67480.1	65.000	360	114	2	11	369	20	368	9.68e-178	498
MsaG025403	AT5G67480.3	65.000	360	114	2	11	369	20	368	9.68e-178	498
MsaG025403	AT5G67480.2	65.000	360	114	2	11	369	31	379	1.58e-177	498
MsaG025403	AT4G37610.1	60.976	328	126	2	41	367	34	360	8.77e-150	427
MsaG025403	AT1G05690.1	49.861	361	167	4	4	360	1	351	1.62e-110	327
MsaG025403	AT3G48360.1	43.789	322	163	8	56	361	28	347	2.28e-79	248
MsaG025403	AT5G63160.1	43.770	313	163	7	61	361	24	335	8.93e-76	239
MsaG025403	AT3G48360.2	45.862	290	142	6	56	331	28	316	1.60e-73	232
MsaG025403	AT5G63160.2	46.099	282	140	6	61	331	24	304	2.72e-71	225
MsaG025403	AT5G63160.3	45.020	251	127	7	120	361	2	250	8.63e-60	194
MsaG025403	AT3G48360.3	44.033	243	122	7	131	361	1	241	1.34e-58	191
MsaG025403	AT1G79000.3	29.577	142	82	4	223	364	1546	1669	6.49e-15	77.0
MsaG025403	AT1G79000.2	29.577	142	82	4	223	364	1570	1693	6.53e-15	77.0
MsaG025403	AT1G79000.1	29.577	142	82	4	223	364	1570	1693	6.56e-15	77.0
MsaG025403	AT1G16710.2	28.873	142	83	4	223	364	1550	1673	9.89e-13	70.5
MsaG025403	AT1G16710.3	28.873	142	83	4	223	364	1553	1676	1.01e-12	70.5
MsaG025403	AT1G16710.10	28.873	142	83	4	223	364	1553	1676	1.01e-12	70.5
MsaG025403	AT1G16710.8	28.873	142	83	4	223	364	1553	1676	1.01e-12	70.5
MsaG025403	AT1G16710.7	28.873	142	83	4	223	364	1553	1676	1.01e-12	70.5
MsaG025403	AT1G16710.6	28.873	142	83	4	223	364	1514	1637	1.04e-12	70.1
MsaG025403	AT1G16710.4	28.873	142	83	4	223	364	1514	1637	1.04e-12	70.1
MsaG025403	AT1G16710.5	28.873	142	83	4	223	364	1514	1637	1.04e-12	70.1
MsaG025403	AT1G16710.1	28.873	142	83	4	223	364	1579	1702	1.08e-12	70.1
MsaG025403	AT3G12980.1	36.471	85	50	2	276	360	1581	1661	4.84e-11	65.1
MsaG025403	AT3G12980.2	36.471	85	50	2	276	360	1500	1580	4.84e-11	65.1

Find 74 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGAAATTAGATGGACAATTT+TGG	0.186306	5:+7911180	MsaT025403.1:CDS
GGCGATCGATCTCAATCTTT+GGG	0.258443	5:+7909810	MsaT025403.1:CDS
TGGCGATCGATCTCAATCTT+TGG	0.276993	5:+7909809	MsaT025403.1:CDS
TTCGATATTTGTATTCTTCC+TGG	0.281886	5:+7909861	MsaT025403.1:CDS
ATCTTGAAAACAAGAGGAAT+TGG	0.329795	5:+7911211	MsaT025403.1:CDS
AAGCAATTCAAGCCCTTTGC+AGG	0.347578	5:-7910900	None:intergenic
TTGGGATTGCACCATGCTTT+CGG	0.361459	5:+7911230	MsaT025403.1:CDS
AAAGAACTTCAAAACTGTTT+CGG	0.374386	5:+7910521	MsaT025403.1:CDS
AGTTCTAGAAAAGGAAATTC+TGG	0.390373	5:+7910581	MsaT025403.1:CDS
CGCATACTCGCAAGGATAAC+CGG	0.402463	5:-7909198	None:intergenic
GCAAGAAAGACGAAATTAGA+TGG	0.406485	5:+7911170	MsaT025403.1:CDS
AAAGGAACTCTACAGAAATC+TGG	0.408140	5:-7911025	None:intergenic
ATGTGAACAGAAGCTAGAAT+TGG	0.410891	5:+7910404	MsaT025403.1:CDS
AGAGATGGTTGTCGAACTAT+TGG	0.415706	5:+7910830	MsaT025403.1:CDS
GGTTGCAAGTTGAGAGTCCC+TGG	0.418562	5:+7910938	MsaT025403.1:CDS
CTAGTTCACATTTGTAGAGA+TGG	0.440223	5:+7910815	MsaT025403.1:CDS
CGAGGCGAAGGAGGTGGTAT+CGG	0.446905	5:-7909164	None:intergenic
TCTGTAGAGTTCCTTTGTGC+AGG	0.450851	5:+7911032	MsaT025403.1:CDS
TCTTGAAAACAAGAGGAATT+GGG	0.451569	5:+7911212	MsaT025403.1:CDS
TTCAGCATGCCTCTCAATAC+AGG	0.459183	5:-7909764	None:intergenic
TGAGATCGATCGCCACCGAT+TGG	0.468351	5:-7909801	None:intergenic
GGAATTTGTCCTACATTTGT+TGG	0.476702	5:+7910341	MsaT025403.1:CDS
GAGTCACCCAGTTCTAGAAA+AGG	0.485308	5:+7910572	MsaT025403.1:CDS
GTTTGCATTAATACTGATAA+CGG	0.495992	5:+7909320	MsaT025403.1:CDS
TGTGAACAGAAGCTAGAATT+GGG	0.501782	5:+7910405	MsaT025403.1:CDS
ACACAGCTGCTTCGCCCTCT+CGG	0.509722	5:-7909239	None:intergenic
TTACGAGAAAGAAGAAATGA+AGG	0.513436	5:+7910320	MsaT025403.1:CDS
TTCTGCAACAAGAGATCTGT+GGG	0.515476	5:+7909265	MsaT025403.1:CDS
TCGCCTCGATCAGCAGCAAC+CGG	0.515743	5:+7909179	MsaT025403.1:CDS
GTTGCAAGTTGAGAGTCCCT+GGG	0.520761	5:+7910939	MsaT025403.1:CDS
CACATTCACGCTTCAAGTGA+GGG	0.529306	5:-7910386	None:intergenic
GTGCTCATTGCAAGAGGATG+TGG	0.529329	5:+7910966	MsaT025403.1:CDS
ATAAGCTGATGGCTAACATT+CGG	0.529455	5:+7909123	None:intergenic
CAAGAGGATGTGGCAACTGT+TGG	0.537744	5:+7910976	MsaT025403.1:CDS
ATTGATTGATCAGAGTAAGA+AGG	0.539090	5:+7910730	MsaT025403.1:intron
CTTTGAAGTCTTTATCATGC+GGG	0.542449	5:-7910853	None:intergenic
AAAACTGTTTCGGAGTCAGA+AGG	0.543714	5:+7910531	MsaT025403.1:CDS
GAGAAAGCACCAACAAATGT+AGG	0.546221	5:-7910350	None:intergenic
AGCAAGCAAATCGTTCCAAT+CGG	0.549306	5:+7909786	MsaT025403.1:CDS
GTTGCTGCTGATCGAGGCGA+AGG	0.550246	5:-7909176	None:intergenic
TTTGCAATTATACGATGCAA+TGG	0.552736	5:+7910787	MsaT025403.1:CDS
GTAGGTATACTTCCTGCAAA+GGG	0.554458	5:+7910888	MsaT025403.1:CDS
GCTGATCGAGGCGAAGGAGG+TGG	0.554736	5:-7909170	None:intergenic
ATCAGTATTAATGCAAACAT+CGG	0.559796	5:-7909315	None:intergenic
AGGAAGTATACCTACACGGC+TGG	0.561333	5:-7910880	None:intergenic
GAAAAGATCTTGAAAACAAG+AGG	0.566400	5:+7911205	MsaT025403.1:CDS
GCTTTGAAGTCTTTATCATG+CGG	0.567781	5:-7910854	None:intergenic
TTCATCGCCGCATACTCGCA+AGG	0.575928	5:-7909206	None:intergenic
ATGAATAATTTATCACCGAG+AGG	0.575964	5:+7909224	MsaT025403.1:CDS
GCTGCTGATCGAGGCGAAGG+AGG	0.588376	5:-7909173	None:intergenic
TGTAGGTATACTTCCTGCAA+AGG	0.593266	5:+7910887	MsaT025403.1:CDS
TTGATCAGAGTAAGAAGGAG+AGG	0.595421	5:+7910735	MsaT025403.1:intron
TCACATTCACGCTTCAAGTG+AGG	0.596344	5:-7910387	None:intergenic
CGGTTATCCTTGCGAGTATG+CGG	0.602040	5:+7909199	MsaT025403.1:CDS
CTGTTTCGGAGTCAGAAGGA+TGG	0.605228	5:+7910535	MsaT025403.1:CDS
AAGCAAATCGTTCCAATCGG+TGG	0.607764	5:+7909789	MsaT025403.1:CDS
TCAAAGCAAACCAGCCGTGT+AGG	0.611970	5:+7910870	MsaT025403.1:CDS
TGTCATTGTGGCCGAAAGCA+TGG	0.612906	5:-7911241	None:intergenic
TAACCGGTTGCTGCTGATCG+AGG	0.614451	5:-7909182	None:intergenic
GGGGTTGTGCTCATTGCAAG+AGG	0.622565	5:+7910960	MsaT025403.1:CDS
AAAACTCGTACTGCATCATG+TGG	0.623793	5:-7909836	None:intergenic
GTGGCTTCTCCTGTATTGAG+AGG	0.626268	5:+7909755	MsaT025403.1:CDS
TACATCAACTAGATTATCCA+CGG	0.627170	5:-7910436	None:intergenic
GCGATCGATCTCAATCTTTG+GGG	0.627705	5:+7909811	MsaT025403.1:CDS
CTTCTGCAACAAGAGATCTG+TGG	0.636785	5:+7909264	MsaT025403.1:CDS
TGAATAATTTATCACCGAGA+GGG	0.647099	5:+7909225	MsaT025403.1:CDS
TGCATTAATACTGATAACGG+TGG	0.661014	5:+7909323	MsaT025403.1:CDS
TTGCAAGTTGAGAGTCCCTG+GGG	0.661286	5:+7910940	MsaT025403.1:CDS
TAATATTGTTACCTGCACAA+AGG	0.667930	5:-7911043	None:intergenic
AGAATTGGGTTTACTCACCG+TGG	0.691467	5:+7910419	MsaT025403.1:CDS
TTGCAGGAAGTATACCTACA+CGG	0.699708	5:-7910884	None:intergenic
TGCAAGTTGAGAGTCCCTGG+GGG	0.717689	5:+7910941	MsaT025403.1:CDS
CATTACTGTGTGATGCTCCG+CGG	0.722450	5:+7910469	MsaT025403.1:CDS
TGACAAATGAGACTGAGCCG+CGG	0.747022	5:-7910486	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	7909131	7911261	7909131	ID=MsaG025403
Chr5	mRNA	7909131	7911261	7909131	ID=MsaT025403.1;Parent=MsaG025403
Chr5	exon	7909131	7909373	7909131	ID=MsaT025403.1.exon1;Parent=MsaT025403.1
Chr5	CDS	7909131	7909373	7909131	ID=cds.MsaT025403.1;Parent=MsaT025403.1
Chr5	exon	7909752	7909882	7909752	ID=MsaT025403.1.exon2;Parent=MsaT025403.1
Chr5	CDS	7909752	7909882	7909752	ID=cds.MsaT025403.1;Parent=MsaT025403.1
Chr5	exon	7910320	7910626	7910320	ID=MsaT025403.1.exon3;Parent=MsaT025403.1
Chr5	CDS	7910320	7910626	7910320	ID=cds.MsaT025403.1;Parent=MsaT025403.1
Chr5	exon	7910743	7911053	7910743	ID=MsaT025403.1.exon4;Parent=MsaT025403.1
Chr5	CDS	7910743	7911053	7910743	ID=cds.MsaT025403.1;Parent=MsaT025403.1
Chr5	exon	7911141	7911261	7911141	ID=MsaT025403.1.exon5;Parent=MsaT025403.1
Chr5	CDS	7911141	7911261	7911141	ID=cds.MsaT025403.1;Parent=MsaT025403.1

Gene Sequence

>MsaT025403.1

ATGGCTAACATTCGGAATGCTAAGAAATTCATTCCGATACCACCTCCTTCGCCTCGATCAGCAGCAACCGGTTATCCTTGCGAGTATGCGGCGATGAATAATTTATCACCGAGAGGGCGAAGCAGCTGTGTCTCTTCTGCAACAAGAGATCTGTGGGAGCGTCTTTTCAATGAAGGGTATAAAGCCGATGTTTGCATTAATACTGATAACGGTGGCATTGTTTATGCTCATTCTAACATTATTGCGGTGGCTTCTCCTGTATTGAGAGGCATGCTGAAGCAAGCAAATCGTTCCAATCGGTGGCGATCGATCTCAATCTTTGGGGTTCCACATGATGCAGTACGAGTTTTTATTCGATATTTGTATTCTTCCTGTTACGAGAAAGAAGAAATGAAGGAATTTGTCCTACATTTGTTGGTGCTTTCTCATGTATACGCAGTCCCTCACTTGAAGCGTGAATGTGAACAGAAGCTAGAATTGGGTTTACTCACCGTGGATAATCTAGTTGATGTATTTCAACTTGCATTACTGTGTGATGCTCCGCGGCTCAGTCTCATTTGTCACCGTAAAATACTAAAGAACTTCAAAACTGTTTCGGAGTCAGAAGGATGGAAAGCAATGAAGCAGAGTCACCCAGTTCTAGAAAAGGAAATTCTGGAATCAATGATTGAAGAAGAAAATAGTAAGAAGGAGAGGATCAGAAAAATGAATGAAAGAGAGGTCTATTTGCAATTATACGATGCAATGGAAGCTCTAGTTCACATTTGTAGAGATGGTTGTCGAACTATTGGCCCGCATGATAAAGACTTCAAAGCAAACCAGCCGTGTAGGTATACTTCCTGCAAAGGGCTTGAATTGCTTGTTCGTCATTTTGCTGGTTGCAAGTTGAGAGTCCCTGGGGGTTGTGCTCATTGCAAGAGGATGTGGCAACTGTTGGAGCTGCATTCTCGACTGTGTGCTGATCCAGATTTCTGTAGAGTTCCTTTGTGCAGGAACTTTAAGCAGAGAATAGCAAAACAAAGCAAGAAAGACGAAATTAGATGGACAATTTTGGTTGAAAAGATCTTGAAAACAAGAGGAATTGGGATTGCACCATGCTTTCGGCCACAATGA

Protein sequence

>MsaT025403.1

MANIRNAKKFIPIPPPSPRSAATGYPCEYAAMNNLSPRGRSSCVSSATRDLWERLFNEGYKADVCINTDNGGIVYAHSNIIAVASPVLRGMLKQANRSNRWRSISIFGVPHDAVRVFIRYLYSSCYEKEEMKEFVLHLLVLSHVYAVPHLKRECEQKLELGLLTVDNLVDVFQLALLCDAPRLSLICHRKILKNFKTVSESEGWKAMKQSHPVLEKEILESMIEEENSKKERIRKMNEREVYLQLYDAMEALVHICRDGCRTIGPHDKDFKANQPCRYTSCKGLELLVRHFAGCKLRVPGGCAHCKRMWQLLELHSRLCADPDFCRVPLCRNFKQRIAKQSKKDEIRWTILVEKILKTRGIGIAPCFRPQ*