AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG025460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG025460 MtrunA17_Chr5g0401821 93.358 271 17 1 1 270 1 271 2.61e-176 486
MsaG025460 MtrunA17_Chr4g0053281 55.588 340 79 9 1 270 1 338 5.10e-104 306
MsaG025460 MtrunA17_Chr4g0071521 43.791 306 107 9 19 266 15 313 2.90e-65 206
MsaG025460 MtrunA17_Chr1g0147881 58.273 139 51 2 138 270 203 340 6.95e-52 172
MsaG025460 MtrunA17_Chr1g0184691 72.897 107 29 0 150 256 245 351 1.20e-43 151
MsaG025460 MtrunA17_Chr3g0139021 51.007 149 72 1 116 264 233 380 7.32e-43 150
MsaG025460 MtrunA17_Chr7g0228941 67.532 77 25 0 179 255 33 109 1.68e-34 121
MsaG025460 MtrunA17_Chr7g0270051 56.180 89 35 1 171 255 22 110 2.24e-28 109
MsaG025460 MtrunA17_Chr2g0319961 51.961 102 33 2 174 264 50 146 3.07e-28 108
MsaG025460 MtrunA17_Chr2g0284321 55.814 86 37 1 173 257 9 94 6.21e-28 106
MsaG025460 MtrunA17_Chr8g0379461 51.613 93 38 1 174 259 45 137 7.46e-28 107
MsaG025460 MtrunA17_Chr2g0293481 56.842 95 36 2 166 255 230 324 3.00e-27 109
MsaG025460 MtrunA17_Chr8g0348311 60.241 83 28 1 173 255 135 212 3.69e-27 107
MsaG025460 MtrunA17_Chr7g0248691 60.241 83 28 1 173 255 134 211 5.20e-27 107
MsaG025460 MtrunA17_Chr3g0101131 49.495 99 41 2 173 263 382 479 3.84e-24 101
MsaG025460 MtrunA17_Chr1g0202461 56.471 85 31 2 173 256 240 319 9.79e-24 99.0
MsaG025460 MtrunA17_Chr5g0445311 48.958 96 37 2 173 257 328 422 2.26e-23 99.0
MsaG025460 MtrunA17_Chr2g0289181 56.061 66 29 0 191 256 7 72 8.00e-23 93.6
MsaG025460 MtrunA17_Chr7g0270191 49.398 83 41 1 173 255 120 201 1.40e-21 91.7
MsaG025460 MtrunA17_Chr7g0263531 49.333 75 37 1 194 268 357 430 2.89e-21 92.4
MsaG025460 MtrunA17_Chr7g0263531 51.429 70 31 3 187 255 177 244 1.55e-14 72.8
MsaG025460 MtrunA17_Chr4g0004911 40.146 137 61 4 128 259 276 396 5.03e-21 92.0
MsaG025460 MtrunA17_Chr4g0004911 52.632 57 26 1 199 255 185 240 5.88e-14 71.2
MsaG025460 MtrunA17_Chr7g0218081 61.905 63 23 1 195 257 407 468 9.79e-21 91.3
MsaG025460 MtrunA17_Chr7g0218081 53.226 62 26 3 195 255 224 283 1.67e-13 70.1
MsaG025460 MtrunA17_Chr5g0418191 55.072 69 30 1 195 263 317 384 2.36e-20 89.7
MsaG025460 MtrunA17_Chr5g0418191 46.575 73 37 2 185 257 138 208 5.93e-13 68.2
MsaG025460 MtrunA17_Chr8g0387501 63.158 57 21 0 199 255 130 186 2.75e-20 87.8
MsaG025460 MtrunA17_Chr4g0051181 33.908 174 88 5 101 257 139 302 3.79e-20 89.7
MsaG025460 MtrunA17_Chr3g0106491 51.899 79 37 1 179 257 346 423 4.05e-20 89.4
MsaG025460 MtrunA17_Chr3g0106491 54.386 57 24 2 199 255 199 253 1.42e-13 70.1
MsaG025460 MtrunA17_Chr4g0042831 51.316 76 36 1 195 270 275 349 9.05e-20 87.8
MsaG025460 MtrunA17_Chr3g0079691 47.368 95 39 2 173 257 460 553 9.28e-20 88.6
MsaG025460 MtrunA17_Chr3g0079691 50.877 57 26 2 199 255 281 335 2.19e-11 63.9
MsaG025460 MtrunA17_Chr5g0432161 51.899 79 37 1 179 257 402 479 1.35e-19 88.2
MsaG025460 MtrunA17_Chr5g0432161 50.877 57 26 2 199 255 245 299 1.59e-12 67.4
MsaG025460 MtrunA17_Chr7g0249311 45.714 105 45 3 173 266 356 459 1.46e-19 88.2
MsaG025460 MtrunA17_Chr7g0249311 51.724 58 26 2 199 256 180 235 7.54e-12 65.1
MsaG025460 MtrunA17_Chr2g0288871 50.000 76 38 0 182 257 289 364 1.92e-19 87.8
MsaG025460 MtrunA17_Chr1g0150801 52.113 71 33 1 185 255 89 158 2.25e-19 82.8
MsaG025460 MtrunA17_Chr7g0270831 50.000 74 37 0 184 257 202 275 2.74e-19 86.7
MsaG025460 MtrunA17_Chr4g0001361 46.591 88 43 2 172 255 132 219 2.78e-19 85.5
MsaG025460 MtrunA17_Chr1g0194481 45.783 83 44 1 173 255 133 214 3.49e-19 85.5
MsaG025460 MtrunA17_Chr3g0136961 55.172 58 26 0 199 256 139 196 3.54e-19 85.1
MsaG025460 MtrunA17_Chr7g0249301 51.899 79 37 1 179 257 273 350 3.73e-19 85.9
MsaG025460 MtrunA17_Chr7g0249301 53.448 58 25 2 199 256 63 118 1.70e-12 66.6
MsaG025460 MtrunA17_Chr3g0099641 50.000 74 37 0 184 257 237 310 3.90e-19 86.7
MsaG025460 MtrunA17_Chr4g0074001 47.126 87 41 2 169 255 334 415 6.05e-19 86.3
MsaG025460 MtrunA17_Chr4g0060271 55.224 67 28 1 195 259 250 316 6.33e-19 86.3
MsaG025460 MtrunA17_Chr7g0243891 40.458 131 63 4 128 257 316 432 6.62e-19 85.9
MsaG025460 MtrunA17_Chr7g0243891 52.632 57 25 2 199 255 217 271 3.30e-12 66.2
MsaG025460 MtrunA17_Chr7g0216891 54.412 68 29 1 195 260 214 281 8.84e-19 85.9
MsaG025460 MtrunA17_Chr1g0150281 52.632 57 27 0 199 255 141 197 8.99e-19 84.0
MsaG025460 MtrunA17_Chr4g0051881 49.296 71 35 1 185 255 165 234 1.63e-18 84.0
MsaG025460 MtrunA17_Chr5g0443131 52.113 71 33 1 185 255 144 213 1.68e-18 83.6
MsaG025460 MtrunA17_Chr2g0333851 55.000 60 27 0 196 255 167 226 1.69e-18 83.6
MsaG025460 MtrunA17_Chr4g0075201 48.684 76 39 0 182 257 251 326 1.98e-18 84.7
MsaG025460 MtrunA17_Chr2g0322391 47.368 76 40 0 182 257 333 408 2.18e-18 84.7
MsaG025460 MtrunA17_Chr2g0302391 48.684 76 39 0 182 257 195 270 3.36e-18 83.6
MsaG025460 MtrunA17_Chr4g0025061 56.667 60 26 0 198 257 360 419 3.78e-18 84.0
MsaG025460 MtrunA17_Chr3g0126391 38.938 113 55 4 146 253 87 190 6.13e-18 82.0
MsaG025460 MtrunA17_Chr5g0418781 41.414 99 56 2 173 270 99 196 1.23e-17 80.5
MsaG025460 MtrunA17_Chr8g0383251 49.315 73 36 1 185 257 95 166 1.36e-17 78.6
MsaG025460 MtrunA17_Chr8g0335811 42.529 87 46 2 173 256 126 211 2.69e-17 78.6
MsaG025460 MtrunA17_Chr8g0383351 50.794 63 30 1 194 256 156 217 4.23e-17 78.2
MsaG025460 MtrunA17_Chr3g0129361 45.455 77 41 1 182 258 128 203 4.85e-17 77.8
MsaG025460 MtrunA17_Chr7g0238921 45.570 79 39 2 177 255 106 180 8.04e-17 79.0
MsaG025460 MtrunA17_Chr2g0294231 48.000 75 38 1 181 255 186 259 8.34e-17 79.3
MsaG025460 MtrunA17_Chr1g0188941 42.353 85 45 2 173 257 29 109 1.64e-16 73.6
MsaG025460 MtrunA17_Chr5g0447701 47.222 72 37 1 185 256 239 309 2.95e-16 77.8
MsaG025460 MtrunA17_Chr4g0025051 55.000 60 27 0 198 257 335 394 3.84e-16 77.8
MsaG025460 MtrunA17_Chr1g0150271 48.387 62 32 0 196 257 99 160 8.89e-16 75.1
MsaG025460 MtrunA17_Chr6g0485431 36.607 112 58 3 165 264 110 220 1.06e-15 75.9
MsaG025460 MtrunA17_Chr3g0129321 47.887 71 36 1 185 255 105 174 2.23e-15 72.8
MsaG025460 MtrunA17_Chr4g0068541 42.697 89 49 2 182 269 192 279 3.50e-15 74.7
MsaG025460 MtrunA17_Chr7g0275531 54.386 57 24 1 199 253 119 175 6.27e-15 73.6
MsaG025460 MtrunA17_Chr8g0347251 40.385 104 59 2 153 253 90 193 6.44e-15 73.6
MsaG025460 MtrunA17_Chr7g0224801 44.286 70 38 1 194 263 89 157 9.84e-15 70.5
MsaG025460 MtrunA17_Chr8g0387981 41.837 98 48 4 173 266 106 198 1.70e-14 72.4
MsaG025460 MtrunA17_Chr1g0189391 50.649 77 32 3 181 256 84 155 4.55e-14 71.2
MsaG025460 MtrunA17_Chr7g0248721 43.750 80 43 2 176 255 119 196 1.63e-13 68.2
MsaG025460 MtrunA17_Chr5g0402931 52.632 57 24 2 199 255 124 177 2.10e-12 64.3
MsaG025460 MtrunA17_Chr8g0386241 42.623 61 34 1 195 255 100 159 1.95e-11 61.6
MsaG025460 MtrunA17_Chr5g0428351 41.463 82 46 1 174 253 159 240 2.44e-11 63.2
MsaG025460 MtrunA17_Chr4g0024391 45.000 60 33 0 198 257 229 288 4.23e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG025460 AT2G23320.1 46.828 331 101 12 1 270 1 317 1.72e-76 235
MsaG025460 AT4G24240.1 41.292 356 98 9 1 259 1 342 9.63e-73 227
MsaG025460 AT4G31550.1 42.025 326 111 11 1 263 1 311 1.11e-68 215
MsaG025460 AT4G31550.2 42.331 326 109 12 1 263 1 310 9.25e-68 213
MsaG025460 AT2G24570.1 39.130 322 119 9 1 261 1 306 1.10e-62 200
MsaG025460 AT3G04670.1 78.571 98 20 1 159 256 224 320 4.26e-51 170
MsaG025460 AT2G30590.1 71.296 108 28 2 150 255 264 370 7.35e-51 171
MsaG025460 AT5G28650.1 61.314 137 46 3 122 256 189 320 1.56e-50 169
MsaG025460 AT2G23320.2 41.606 274 90 11 1 218 1 260 3.32e-45 153
MsaG025460 AT4G24240.2 36.190 315 90 9 1 218 1 301 1.04e-43 150
MsaG025460 AT4G31550.3 37.722 281 96 12 1 218 1 265 5.27e-39 137
MsaG025460 AT1G29280.1 51.000 100 42 2 167 260 38 136 1.03e-28 110
MsaG025460 AT4G01250.1 56.667 90 34 1 166 255 101 185 5.79e-28 109
MsaG025460 AT3G58710.2 52.941 102 32 2 174 264 40 136 1.39e-27 107
MsaG025460 AT3G58710.1 47.154 123 50 3 156 264 16 137 2.88e-27 107
MsaG025460 AT2G34830.1 57.471 87 32 2 174 255 186 272 3.97e-27 109
MsaG025460 AT2G34830.2 57.471 87 32 2 174 255 195 281 4.05e-27 109
MsaG025460 AT1G30650.1 57.471 87 32 2 174 255 188 274 3.89e-26 106
MsaG025460 AT3G04670.2 75.000 64 15 1 159 222 224 286 1.07e-25 103
MsaG025460 AT5G26170.1 56.944 72 30 1 185 256 100 170 1.53e-23 94.4
MsaG025460 AT5G52830.1 53.012 83 35 1 173 255 144 222 3.37e-23 97.4
MsaG025460 AT4G23550.1 54.545 77 31 1 181 257 127 199 4.94e-22 93.6
MsaG025460 AT2G04880.1 49.412 85 39 2 185 266 294 377 4.97e-22 95.5
MsaG025460 AT2G04880.2 49.412 85 39 2 185 266 270 353 5.12e-22 95.1
MsaG025460 AT4G26640.5 53.947 76 34 1 182 257 189 263 8.83e-22 94.0
MsaG025460 AT4G26640.6 53.947 76 34 1 182 257 189 263 8.83e-22 94.0
MsaG025460 AT4G26640.4 53.947 76 34 1 182 257 189 263 8.83e-22 94.0
MsaG025460 AT4G26640.3 53.947 76 34 1 182 257 189 263 8.83e-22 94.0
MsaG025460 AT4G26640.7 47.368 95 39 2 173 257 306 399 1.47e-21 94.0
MsaG025460 AT4G26640.2 53.947 76 34 1 182 257 365 439 1.50e-21 94.4
MsaG025460 AT4G26640.1 53.947 76 34 1 182 257 293 367 1.51e-21 94.0
MsaG025460 AT1G13960.2 54.795 73 32 1 185 257 243 314 3.36e-21 92.0
MsaG025460 AT1G13960.2 54.839 62 25 3 195 255 72 131 1.43e-14 73.2
MsaG025460 AT2G38470.1 52.632 76 35 1 182 257 346 420 4.67e-21 92.8
MsaG025460 AT2G38470.1 52.632 57 25 2 199 255 185 239 4.72e-13 69.3
MsaG025460 AT5G07100.2 53.425 73 33 1 185 257 128 199 6.45e-21 88.6
MsaG025460 AT5G07100.2 49.123 57 28 1 199 255 25 80 1.29e-11 63.2
MsaG025460 AT5G07100.4 53.425 73 33 1 185 257 128 199 6.45e-21 88.6
MsaG025460 AT5G07100.4 49.123 57 28 1 199 255 25 80 1.29e-11 63.2
MsaG025460 AT5G07100.5 53.425 73 33 1 185 257 128 199 6.45e-21 88.6
MsaG025460 AT5G07100.5 49.123 57 28 1 199 255 25 80 1.29e-11 63.2
MsaG025460 AT5G07100.3 53.425 73 33 1 185 257 128 199 6.45e-21 88.6
MsaG025460 AT5G07100.3 49.123 57 28 1 199 255 25 80 1.29e-11 63.2
MsaG025460 AT1G13960.1 54.795 73 32 1 185 257 396 467 7.22e-21 92.0
MsaG025460 AT1G13960.1 54.839 62 25 3 195 255 225 284 1.41e-14 73.6
MsaG025460 AT1G29860.1 51.316 76 36 1 182 257 120 194 2.06e-20 88.6
MsaG025460 AT4G18170.1 44.706 85 46 1 173 257 147 230 2.46e-20 89.0
MsaG025460 AT5G07100.1 53.425 73 33 1 185 257 221 292 2.82e-20 88.6
MsaG025460 AT5G07100.1 49.123 57 28 1 199 255 118 173 1.99e-11 63.5
MsaG025460 AT1G62300.1 51.316 76 37 0 182 257 296 371 3.70e-20 90.1
MsaG025460 AT5G49520.1 49.367 79 39 1 182 260 205 282 4.02e-20 89.4
MsaG025460 AT4G04450.2 50.000 76 38 0 182 257 182 257 5.57e-20 89.4
MsaG025460 AT4G22070.4 51.316 76 37 0 182 257 281 356 6.15e-20 89.4
MsaG025460 AT4G22070.3 51.316 76 37 0 182 257 281 356 6.15e-20 89.4
MsaG025460 AT4G22070.2 51.316 76 37 0 182 257 281 356 6.15e-20 89.4
MsaG025460 AT4G22070.1 51.316 76 37 0 182 257 281 356 6.15e-20 89.4
MsaG025460 AT5G45050.2 50.602 83 37 1 173 255 1131 1209 8.56e-20 89.4
MsaG025460 AT5G45050.1 50.602 83 37 1 173 255 1159 1237 8.83e-20 89.4
MsaG025460 AT5G45050.4 50.602 83 37 1 173 255 1020 1098 1.03e-19 89.4
MsaG025460 AT4G04450.1 50.000 76 38 0 182 257 276 351 1.03e-19 89.0
MsaG025460 AT2G03340.1 52.055 73 34 1 185 257 402 473 1.26e-19 88.6
MsaG025460 AT2G03340.1 51.389 72 32 3 194 264 245 314 6.49e-16 77.8
MsaG025460 AT5G56270.1 46.875 96 39 2 173 257 451 545 2.25e-19 88.2
MsaG025460 AT5G15130.2 56.716 67 27 1 195 259 180 246 2.43e-19 87.8
MsaG025460 AT5G15130.1 56.716 67 27 1 195 259 222 288 2.98e-19 87.4
MsaG025460 AT4G30935.1 36.723 177 93 5 91 259 226 391 3.07e-19 87.4
MsaG025460 AT2G47260.1 46.988 83 43 1 173 255 149 230 3.40e-19 86.3
MsaG025460 AT5G64810.1 34.545 165 94 5 112 267 20 179 3.44e-19 83.6
MsaG025460 AT1G68150.1 59.322 59 24 0 199 257 236 294 4.17e-19 86.3
MsaG025460 AT4G31800.2 54.386 57 26 0 199 255 112 168 7.59e-19 83.6
MsaG025460 AT4G39410.1 46.512 86 42 2 174 256 196 280 8.46e-19 84.7
MsaG025460 AT4G26440.1 39.850 133 65 3 123 255 311 428 1.02e-18 85.9
MsaG025460 AT4G31800.1 54.386 57 26 0 199 255 177 233 1.28e-18 84.0
MsaG025460 AT4G01720.1 50.000 76 38 0 182 257 223 298 2.24e-18 84.7
MsaG025460 AT3G01080.1 56.250 64 27 1 194 257 302 364 4.84e-18 83.6
MsaG025460 AT3G01080.1 53.226 62 26 3 195 255 163 222 2.54e-13 69.7
MsaG025460 AT3G62340.1 44.706 85 46 1 176 260 96 179 4.91e-18 82.0
MsaG025460 AT2G37260.3 56.250 64 27 1 194 257 265 327 4.93e-18 82.8
MsaG025460 AT2G37260.3 55.172 58 24 2 199 256 86 141 1.93e-12 67.0
MsaG025460 AT2G37260.2 56.250 64 27 1 194 257 263 325 5.14e-18 82.8
MsaG025460 AT2G37260.2 55.172 58 24 2 199 256 84 139 1.98e-12 66.6
MsaG025460 AT3G01080.2 57.143 63 26 1 195 257 341 402 5.39e-18 83.6
MsaG025460 AT3G01080.2 53.226 62 26 3 195 255 201 260 2.18e-13 70.1
MsaG025460 AT2G37260.1 59.322 59 23 1 199 257 350 407 5.90e-18 83.2
MsaG025460 AT2G37260.1 55.172 58 24 2 199 256 166 221 1.52e-12 67.4
MsaG025460 AT1G80840.1 49.254 67 33 1 199 264 147 213 7.46e-18 82.0
MsaG025460 AT1G69310.4 46.341 82 43 1 174 255 123 203 7.73e-18 81.6
MsaG025460 AT1G69310.2 46.341 82 43 1 174 255 123 203 7.73e-18 81.6
MsaG025460 AT1G69310.1 46.341 82 43 1 174 255 123 203 7.73e-18 81.6
MsaG025460 AT2G40740.1 44.330 97 50 3 161 253 134 230 8.74e-18 81.6
MsaG025460 AT2G40740.3 44.330 97 50 3 161 253 143 239 1.20e-17 81.3
MsaG025460 AT1G55600.1 48.052 77 36 2 182 255 288 363 1.34e-17 82.4
MsaG025460 AT2G25000.2 53.448 58 27 0 199 256 104 161 1.35e-17 79.7
MsaG025460 AT2G25000.4 53.448 58 27 0 199 256 104 161 1.35e-17 79.7
MsaG025460 AT1G64000.1 42.857 84 47 1 172 255 88 170 1.60e-17 79.0
MsaG025460 AT2G25000.3 53.448 58 27 0 199 256 126 183 3.11e-17 79.3
MsaG025460 AT5G46350.1 46.575 73 38 1 185 257 170 241 3.47e-17 80.5
MsaG025460 AT2G25000.1 53.448 58 27 0 199 256 147 204 3.89e-17 79.3
MsaG025460 AT2G44745.1 42.857 84 44 2 175 255 119 201 8.84e-17 77.4
MsaG025460 AT5G41570.1 40.860 93 53 2 176 267 76 167 1.05e-16 76.3
MsaG025460 AT3G01970.1 44.595 74 40 1 185 258 52 124 2.30e-16 74.7
MsaG025460 AT1G18860.1 46.250 80 40 2 181 257 219 298 4.10e-16 78.2
MsaG025460 AT2G30250.1 45.205 73 39 1 185 257 315 386 5.38e-16 77.4
MsaG025460 AT2G21900.1 47.297 74 35 2 199 269 110 182 8.84e-16 74.3
MsaG025460 AT5G45260.1 46.835 79 34 2 179 255 1195 1267 3.20e-15 75.9
MsaG025460 AT5G43290.1 56.140 57 24 1 199 255 115 170 8.62e-15 72.8
MsaG025460 AT5G13080.1 43.836 73 40 1 185 257 54 125 1.00e-14 70.1
MsaG025460 AT1G69810.1 53.448 58 26 1 203 259 208 265 1.72e-14 73.2
MsaG025460 AT2G46130.1 50.000 62 30 1 194 255 26 86 2.01e-14 68.2
MsaG025460 AT1G69810.2 47.945 73 36 2 199 270 146 217 2.44e-14 72.4
MsaG025460 AT4G11070.2 38.462 117 66 3 140 253 53 166 3.52e-14 71.2
MsaG025460 AT4G11070.1 38.462 117 66 3 140 253 85 198 4.30e-14 71.2
MsaG025460 AT4G23810.1 37.209 129 72 4 145 265 100 227 8.31e-14 70.5
MsaG025460 AT3G01080.3 53.226 62 26 3 195 255 201 260 1.32e-13 70.1
MsaG025460 AT1G69310.3 43.902 82 41 2 174 255 123 199 1.79e-13 69.3
MsaG025460 AT2G46400.1 41.667 84 45 2 174 253 78 161 1.72e-12 66.6
MsaG025460 AT5G24110.1 42.169 83 45 2 173 253 89 170 6.50e-12 65.1
MsaG025460 AT3G56400.1 29.936 157 100 5 106 253 22 177 7.90e-12 64.7
MsaG025460 AT1G66560.1 49.153 59 28 1 197 253 102 160 1.07e-11 63.9
MsaG025460 AT4G12020.6 50.877 57 26 2 199 255 469 523 1.62e-11 65.1
MsaG025460 AT4G12020.8 50.877 57 26 2 199 255 469 523 1.62e-11 65.1
MsaG025460 AT4G12020.1 50.877 57 26 2 199 255 469 523 1.69e-11 64.7
MsaG025460 AT4G12020.9 50.877 57 26 2 199 255 469 523 1.69e-11 64.7
MsaG025460 AT4G12020.7 50.877 57 26 2 199 255 469 523 1.73e-11 64.7
MsaG025460 AT4G12020.3 50.877 57 26 2 199 255 469 523 1.91e-11 64.7
MsaG025460 AT4G12020.10 50.877 57 26 2 199 255 469 523 1.93e-11 64.7
MsaG025460 AT4G12020.4 50.877 57 26 2 199 255 469 523 2.02e-11 64.7
MsaG025460 AT4G12020.5 50.877 57 26 2 199 255 402 456 2.03e-11 64.7
MsaG025460 AT4G12020.2 50.877 57 26 2 199 255 469 523 2.12e-11 64.7
MsaG025460 AT4G12020.11 50.877 57 26 2 199 255 469 523 2.22e-11 64.3
MsaG025460 AT5G22570.1 46.479 71 32 2 196 260 108 178 3.12e-11 62.8
MsaG025460 AT1G80590.1 47.761 67 29 2 193 253 76 142 4.40e-11 62.0
MsaG025460 AT1G66550.2 47.458 59 29 1 197 253 102 160 5.36e-11 61.6
MsaG025460 AT1G66550.1 47.458 59 29 1 197 253 107 165 5.69e-11 61.6

Find 46 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAGGTTTCTTCTTCTTT+TGG 0.181004 5:+8593629 MsaT025460.1:CDS
TACAAGTGCAGCAGTGTTAA+AGG 0.228295 5:+8594757 MsaT025460.1:CDS
ATTTCACTTCTGAGTCAAAA+TGG 0.248832 5:+8593446 MsaT025460.1:CDS
GGATGAGGTGATCCTTTAAT+TGG 0.267426 5:-8593950 None:intergenic
TTCCAACTGATGAATATTCT+TGG 0.308006 5:+8593909 MsaT025460.1:CDS
CCATAGAGAGGGAGTGATTA+TGG 0.313770 5:-8594852 None:intergenic
GCAGTTGAAGAAGCTGCTTC+TGG 0.326064 5:+8593296 MsaT025460.1:CDS
TTATCAATAACTTCATTGTT+GGG 0.328912 5:-8593581 None:intergenic
ACTTCATTGTTGGGGATTAG+AGG 0.342249 5:-8593572 None:intergenic
CTAGTTTCAGAAGTGGAAAT+AGG 0.349279 5:-8593515 None:intergenic
CTTATCAATAACTTCATTGT+TGG 0.356327 5:-8593582 None:intergenic
CCATAATCACTCCCTCTCTA+TGG 0.363814 5:+8594852 MsaT025460.1:CDS
CTTCTTCAACTGCATTCTCT+TGG 0.364489 5:-8593286 None:intergenic
GAATATTCTTGGAGGAAGTA+TGG 0.385581 5:+8593920 MsaT025460.1:CDS
AAGTGTAGCTCTGAGAATTA+TGG 0.386635 5:+8593686 MsaT025460.1:CDS
AAAACATGTAGAAAGAGCTT+TGG 0.435280 5:+8594792 MsaT025460.1:CDS
TAAGTAACTACCAACATAGA+TGG 0.441381 5:-8594820 None:intergenic
AGTCAAAATGGAACAAGAAC+TGG 0.459813 5:+8593458 MsaT025460.1:CDS
CTCCAAGAATATTCATCAGT+TGG 0.460948 5:-8593911 None:intergenic
TATGGCCGTTGAACTAATGA+TGG 0.474638 5:+8593232 None:intergenic
ATGTTGGTAGTTACTTATGA+AGG 0.478399 5:+8594826 MsaT025460.1:CDS
GAATACAAACCCTAATTCCA+TGG 0.508067 5:+8593376 MsaT025460.1:CDS
TATCAATAACTTCATTGTTG+GGG 0.523155 5:-8593580 None:intergenic
GAGGTTGAAAAGAGTGGTGA+GGG 0.532472 5:+8593856 MsaT025460.1:CDS
TCAATTCAATCCAGTTCAAG+AGG 0.532612 5:-8594902 None:intergenic
CAACTGATGAATATTCTTGG+AGG 0.535323 5:+8593912 MsaT025460.1:CDS
GTGTCCCATCATTAGTTCAA+CGG 0.535706 5:-8593237 None:intergenic
TCAGAAGTGGAAATAGGAGT+AGG 0.537893 5:-8593509 None:intergenic
AGCTGCAATAAGTTTGAAGA+TGG 0.547952 5:+8593880 MsaT025460.1:CDS
ACTGTCATTGTTCAAAGAAG+AGG 0.551193 5:+8593738 MsaT025460.1:CDS
GTGGAAATAGGAGTAGGTAA+AGG 0.552478 5:-8593503 None:intergenic
TTTGGATGATCCATCTATGT+TGG 0.552858 5:+8594810 MsaT025460.1:CDS
TGAAACAGCAACATCAGCTA+CGG 0.565102 5:-8593408 None:intergenic
ATAATCAAGTACCTTGGATG+AGG 0.580943 5:-8593965 None:intergenic
GTAGACTCTAGTTTCAGAAG+TGG 0.596356 5:-8593522 None:intergenic
TCATTGTTGGGGATTAGAGG+AGG 0.598888 5:-8593569 None:intergenic
TGAGGTTGAAAAGAGTGGTG+AGG 0.601654 5:+8593855 MsaT025460.1:CDS
ATTAGCTTCAACCATAGAGA+GGG 0.604376 5:-8594863 None:intergenic
TTAAAGGATCACCTCATCCA+AGG 0.605873 5:+8593954 MsaT025460.1:CDS
AGAGGAGGAATCTGCTGCAA+CGG 0.605875 5:-8593554 None:intergenic
TATTAGCTTCAACCATAGAG+AGG 0.607872 5:-8594864 None:intergenic
ATGGCCGTTGAACTAATGAT+GGG 0.631577 5:+8593233 MsaT025460.1:CDS
TCTGCTGCAACGGAGTAGCA+TGG 0.640412 5:-8593544 None:intergenic
AAAAGAAGAAGAAACCTGAG+AGG 0.683869 5:-8593627 None:intergenic
AATTATGGTAATGAAAAGTG+TGG 0.696342 5:+8593701 MsaT025460.1:CDS
TCTTCTTTGAACAATGACAG+TGG 0.712784 5:-8593736 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 8593233 8594909 8593233 ID=MsaG025460
Chr5 mRNA 8593233 8594909 8593233 ID=MsaT025460.1;Parent=MsaG025460
Chr5 exon 8593233 8593759 8593233 ID=MsaT025460.1.exon1;Parent=MsaT025460.1
Chr5 CDS 8593233 8593759 8593233 ID=cds.MsaT025460.1;Parent=MsaT025460.1
Chr5 exon 8593850 8593975 8593850 ID=MsaT025460.1.exon2;Parent=MsaT025460.1
Chr5 CDS 8593850 8593975 8593850 ID=cds.MsaT025460.1;Parent=MsaT025460.1
Chr5 exon 8594750 8594909 8594750 ID=MsaT025460.1.exon3;Parent=MsaT025460.1
Chr5 CDS 8594750 8594909 8594750 ID=cds.MsaT025460.1;Parent=MsaT025460.1
Gene Sequence

>MsaT025460.1

ATGGCCGTTGAACTAATGATGGGACACAAAAACAACAATTTAACAAACAAATTCCAAGAGAATGCAGTTGAAGAAGCTGCTTCTGGTTTACAAAGCATAGAAAAACTCATTAAATTACTATCATCATCACAAACATGTTCTTCGAATACAAACCCTAATTCCATGGACTATAAAACCGTAGCTGATGTTGCTGTTTCAAAGTTTAAGAATGTTATTTCACTTCTGAGTCAAAATGGAACAAGAACTGGTCATGCACGTTTCAGAAGAGCACCTTTACCTACTCCTATTTCCACTTCTGAAACTAGAGTCTACCATGCTACTCCGTTGCAGCAGATTCCTCCTCTAATCCCCAACAATGAAGTTATTGATAAGAATATCATTGATTTTTCTTATTCCTCTCAGGTTTCTTCTTCTTTTGGAAAGTCTTGTGTTTCTTCGTGTTCGTTGAAGAGAAAGTGTAGCTCTGAGAATTATGGTAATGAAAAGTGTGGTAGTTCATCTAGCCACTGTCATTGTTCAAAGAAGAGAAAAATGAGGTTGAAAAGAGTGGTGAGGGTAGCTGCAATAAGTTTGAAGATGGCTGATATTCCAACTGATGAATATTCTTGGAGGAAGTATGGTCAAAAACCAATTAAAGGATCACCTCATCCAAGGGGTTATTACAAGTGCAGCAGTGTTAAAGGCTGTCCAGCACGAAAACATGTAGAAAGAGCTTTGGATGATCCATCTATGTTGGTAGTTACTTATGAAGGCAACCATAATCACTCCCTCTCTATGGTTGAAGCTAATAATCTCATCTTAGAATCCTCTTGA
Protein sequence

>MsaT025460.1

MAVELMMGHKNNNLTNKFQENAVEEAASGLQSIEKLIKLLSSSQTCSSNTNPNSMDYKTVADVAVSKFKNVISLLSQNGTRTGHARFRRAPLPTPISTSETRVYHATPLQQIPPLIPNNEVIDKNIIDFSYSSQVSSSFGKSCVSSCSLKRKCSSENYGNEKCGSSSSHCHCSKKRKMRLKRVVRVAAISLKMADIPTDEYSWRKYGQKPIKGSPHPRGYYKCSSVKGCPARKHVERALDDPSMLVVTYEGNHNHSLSMVEANNLILESS*