Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025485 | XP_003611714.1 | 95.224 | 335 | 15 | 1 | 17 | 350 | 10 | 344 | 0.0 | 607 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025485 | sp|Q9FUA4|SPT_ARATH | 54.054 | 185 | 58 | 4 | 81 | 263 | 160 | 319 | 2.58e-44 | 159 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025485 | tr|G7K6L5|G7K6L5_MEDTR | 95.224 | 335 | 15 | 1 | 17 | 350 | 10 | 344 | 0.0 | 607 |
Gene ID | Type | Classification |
---|---|---|
MsaG025485 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025485 | MtrunA17_Chr5g0402031 | 95.224 | 335 | 15 | 1 | 17 | 350 | 10 | 344 | 0.0 | 607 |
MsaG025485 | MtrunA17_Chr1g0153241 | 80.220 | 91 | 17 | 1 | 100 | 189 | 73 | 163 | 2.03e-41 | 145 |
MsaG025485 | MtrunA17_Chr1g0193321 | 57.143 | 119 | 50 | 1 | 82 | 200 | 434 | 551 | 3.93e-33 | 130 |
MsaG025485 | MtrunA17_Chr7g0262691 | 56.667 | 120 | 43 | 3 | 75 | 186 | 213 | 331 | 2.73e-29 | 117 |
MsaG025485 | MtrunA17_Chr1g0182791 | 59.813 | 107 | 38 | 3 | 80 | 186 | 289 | 390 | 2.83e-29 | 118 |
MsaG025485 | MtrunA17_Chr3g0095391 | 67.949 | 78 | 23 | 1 | 112 | 187 | 310 | 387 | 3.46e-26 | 108 |
MsaG025485 | MtrunA17_Chr7g0271251 | 49.612 | 129 | 52 | 2 | 92 | 207 | 406 | 534 | 3.36e-24 | 103 |
MsaG025485 | MtrunA17_Chr7g0231461 | 68.182 | 66 | 21 | 0 | 112 | 177 | 298 | 363 | 1.26e-22 | 98.6 |
MsaG025485 | MtrunA17_Chr7g0270871 | 50.549 | 91 | 42 | 1 | 91 | 181 | 185 | 272 | 1.34e-21 | 94.7 |
MsaG025485 | MtrunA17_Chr4g0074161 | 58.730 | 63 | 26 | 0 | 113 | 175 | 208 | 270 | 1.15e-18 | 86.7 |
MsaG025485 | MtrunA17_Chr1g0190731 | 53.030 | 66 | 31 | 0 | 110 | 175 | 192 | 257 | 2.45e-17 | 82.0 |
MsaG025485 | MtrunA17_Chr5g0393721 | 44.444 | 81 | 43 | 1 | 107 | 187 | 222 | 300 | 2.20e-15 | 76.3 |
MsaG025485 | MtrunA17_Chr8g0385911 | 33.121 | 157 | 76 | 8 | 98 | 231 | 135 | 285 | 4.40e-15 | 75.1 |
MsaG025485 | MtrunA17_Chr6g0484271 | 35.938 | 128 | 67 | 3 | 52 | 176 | 106 | 221 | 6.21e-14 | 71.2 |
MsaG025485 | MtrunA17_Chr3g0131771 | 41.758 | 91 | 48 | 3 | 97 | 186 | 136 | 222 | 1.45e-13 | 70.9 |
MsaG025485 | MtrunA17_Chr3g0134741 | 36.634 | 101 | 60 | 2 | 88 | 186 | 206 | 304 | 3.23e-13 | 69.7 |
MsaG025485 | MtrunA17_Chr1g0207311 | 37.179 | 78 | 49 | 0 | 110 | 187 | 195 | 272 | 4.93e-13 | 68.6 |
MsaG025485 | MtrunA17_Chr3g0144641 | 49.231 | 65 | 32 | 1 | 113 | 176 | 193 | 257 | 5.47e-13 | 69.3 |
MsaG025485 | MtrunA17_Chr7g0234761 | 49.231 | 65 | 32 | 1 | 113 | 176 | 319 | 383 | 8.68e-13 | 69.3 |
MsaG025485 | MtrunA17_Chr1g0152651 | 40.244 | 82 | 47 | 1 | 105 | 186 | 270 | 349 | 1.01e-12 | 68.6 |
MsaG025485 | MtrunA17_Chr8g0365941 | 49.231 | 65 | 32 | 1 | 113 | 176 | 307 | 371 | 1.03e-12 | 68.9 |
MsaG025485 | MtrunA17_Chr8g0339091 | 49.231 | 65 | 32 | 1 | 113 | 176 | 293 | 357 | 1.40e-12 | 68.6 |
MsaG025485 | MtrunA17_Chr8g0363921 | 46.154 | 65 | 34 | 1 | 113 | 176 | 153 | 217 | 1.58e-12 | 67.0 |
MsaG025485 | MtrunA17_Chr5g0415291 | 38.384 | 99 | 58 | 2 | 79 | 176 | 82 | 178 | 2.41e-12 | 65.9 |
MsaG025485 | MtrunA17_Chr4g0035101 | 47.692 | 65 | 33 | 1 | 113 | 176 | 145 | 209 | 2.64e-12 | 67.0 |
MsaG025485 | MtrunA17_Chr1g0152131 | 47.692 | 65 | 33 | 1 | 113 | 176 | 262 | 326 | 2.70e-12 | 67.4 |
MsaG025485 | MtrunA17_Chr1g0207301 | 37.647 | 85 | 53 | 0 | 118 | 202 | 295 | 379 | 3.27e-12 | 67.0 |
MsaG025485 | MtrunA17_Chr5g0421111 | 47.692 | 65 | 33 | 1 | 113 | 176 | 367 | 431 | 6.91e-12 | 66.6 |
MsaG025485 | MtrunA17_Chr5g0400661 | 38.158 | 76 | 47 | 0 | 102 | 177 | 130 | 205 | 7.48e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025485 | AT4G36930.1 | 54.054 | 185 | 58 | 4 | 81 | 263 | 160 | 319 | 2.63e-45 | 159 |
MsaG025485 | AT5G67110.1 | 52.381 | 168 | 57 | 5 | 19 | 184 | 14 | 160 | 1.72e-36 | 131 |
MsaG025485 | AT1G09530.3 | 59.292 | 113 | 41 | 3 | 85 | 194 | 311 | 421 | 9.51e-31 | 122 |
MsaG025485 | AT1G09530.2 | 59.292 | 113 | 41 | 3 | 85 | 194 | 311 | 421 | 9.51e-31 | 122 |
MsaG025485 | AT1G09530.5 | 59.292 | 113 | 41 | 3 | 85 | 194 | 311 | 421 | 9.51e-31 | 122 |
MsaG025485 | AT1G09530.1 | 59.292 | 113 | 41 | 3 | 85 | 194 | 311 | 421 | 9.51e-31 | 122 |
MsaG025485 | AT1G09530.4 | 59.292 | 113 | 41 | 3 | 85 | 194 | 311 | 421 | 9.51e-31 | 122 |
MsaG025485 | AT1G09530.6 | 59.292 | 113 | 41 | 3 | 85 | 194 | 311 | 421 | 9.51e-31 | 122 |
MsaG025485 | AT2G20180.7 | 63.441 | 93 | 24 | 1 | 83 | 175 | 189 | 271 | 3.40e-29 | 116 |
MsaG025485 | AT2G20180.1 | 63.441 | 93 | 24 | 1 | 83 | 175 | 189 | 271 | 3.40e-29 | 116 |
MsaG025485 | AT2G20180.5 | 63.441 | 93 | 24 | 1 | 83 | 175 | 189 | 271 | 3.40e-29 | 116 |
MsaG025485 | AT2G20180.4 | 63.441 | 93 | 24 | 1 | 83 | 175 | 260 | 342 | 8.93e-29 | 116 |
MsaG025485 | AT2G20180.6 | 63.441 | 93 | 24 | 1 | 83 | 175 | 260 | 342 | 8.93e-29 | 116 |
MsaG025485 | AT2G20180.2 | 63.441 | 93 | 24 | 1 | 83 | 175 | 260 | 342 | 8.93e-29 | 116 |
MsaG025485 | AT2G20180.3 | 63.441 | 93 | 24 | 1 | 83 | 175 | 260 | 342 | 8.93e-29 | 116 |
MsaG025485 | AT2G20180.8 | 63.333 | 90 | 23 | 1 | 83 | 172 | 260 | 339 | 1.56e-27 | 110 |
MsaG025485 | AT4G00050.2 | 50.862 | 116 | 49 | 3 | 64 | 177 | 62 | 171 | 2.43e-26 | 107 |
MsaG025485 | AT4G00050.3 | 50.862 | 116 | 49 | 3 | 64 | 177 | 164 | 273 | 7.17e-26 | 107 |
MsaG025485 | AT4G00050.1 | 50.862 | 116 | 49 | 3 | 64 | 177 | 164 | 273 | 8.77e-26 | 107 |
MsaG025485 | AT4G28800.1 | 42.647 | 136 | 73 | 4 | 51 | 184 | 189 | 321 | 2.45e-22 | 97.8 |
MsaG025485 | AT2G46970.2 | 46.226 | 106 | 53 | 1 | 113 | 218 | 194 | 295 | 5.72e-22 | 96.3 |
MsaG025485 | AT2G46970.3 | 46.226 | 106 | 53 | 1 | 113 | 218 | 203 | 304 | 7.14e-22 | 95.9 |
MsaG025485 | AT2G46970.1 | 46.226 | 106 | 53 | 1 | 113 | 218 | 225 | 326 | 8.38e-22 | 95.9 |
MsaG025485 | AT3G59060.3 | 58.427 | 89 | 30 | 2 | 112 | 194 | 251 | 338 | 1.38e-20 | 92.8 |
MsaG025485 | AT3G59060.2 | 58.427 | 89 | 30 | 2 | 112 | 194 | 251 | 338 | 1.38e-20 | 92.8 |
MsaG025485 | AT3G59060.4 | 58.427 | 89 | 30 | 2 | 112 | 194 | 251 | 338 | 1.38e-20 | 92.8 |
MsaG025485 | AT3G59060.1 | 58.427 | 89 | 30 | 2 | 112 | 194 | 251 | 338 | 1.39e-20 | 92.8 |
MsaG025485 | AT4G28790.1 | 57.895 | 76 | 31 | 1 | 111 | 186 | 271 | 345 | 1.73e-20 | 92.4 |
MsaG025485 | AT4G28800.2 | 43.089 | 123 | 66 | 3 | 51 | 171 | 201 | 321 | 5.04e-20 | 91.3 |
MsaG025485 | AT2G24260.2 | 60.317 | 63 | 25 | 0 | 113 | 175 | 37 | 99 | 7.76e-20 | 87.8 |
MsaG025485 | AT4G28815.2 | 52.564 | 78 | 35 | 1 | 111 | 186 | 68 | 145 | 1.12e-19 | 87.0 |
MsaG025485 | AT2G43010.1 | 75.806 | 62 | 15 | 0 | 112 | 173 | 252 | 313 | 1.13e-19 | 90.1 |
MsaG025485 | AT2G43010.2 | 75.806 | 62 | 15 | 0 | 112 | 173 | 252 | 313 | 1.16e-19 | 90.1 |
MsaG025485 | AT2G43010.4 | 75.806 | 62 | 15 | 0 | 112 | 173 | 252 | 313 | 1.23e-19 | 89.7 |
MsaG025485 | AT2G43010.3 | 75.806 | 62 | 15 | 0 | 112 | 173 | 259 | 320 | 1.33e-19 | 89.7 |
MsaG025485 | AT2G43010.5 | 75.806 | 62 | 15 | 0 | 112 | 173 | 294 | 355 | 1.93e-19 | 89.7 |
MsaG025485 | AT4G30980.1 | 37.778 | 135 | 71 | 2 | 41 | 175 | 73 | 194 | 2.07e-19 | 87.8 |
MsaG025485 | AT2G24260.1 | 60.317 | 63 | 25 | 0 | 113 | 175 | 140 | 202 | 2.30e-19 | 88.2 |
MsaG025485 | AT5G58010.1 | 57.576 | 66 | 28 | 0 | 110 | 175 | 98 | 163 | 2.33e-19 | 87.4 |
MsaG025485 | AT4G28790.2 | 63.636 | 66 | 24 | 0 | 111 | 176 | 271 | 336 | 2.85e-19 | 87.8 |
MsaG025485 | AT4G30980.2 | 37.778 | 135 | 71 | 2 | 41 | 175 | 121 | 242 | 3.08e-19 | 88.2 |
MsaG025485 | AT4G28815.1 | 52.564 | 78 | 35 | 1 | 111 | 186 | 144 | 221 | 3.40e-19 | 87.0 |
MsaG025485 | AT5G67110.3 | 41.071 | 168 | 54 | 6 | 19 | 184 | 14 | 138 | 1.92e-17 | 79.7 |
MsaG025485 | AT5G61270.2 | 58.333 | 72 | 30 | 0 | 108 | 179 | 69 | 140 | 3.53e-17 | 80.9 |
MsaG025485 | AT5G61270.3 | 58.333 | 72 | 30 | 0 | 108 | 179 | 69 | 140 | 3.53e-17 | 80.9 |
MsaG025485 | AT5G61270.1 | 58.333 | 72 | 30 | 0 | 108 | 179 | 157 | 228 | 6.39e-17 | 81.3 |
MsaG025485 | AT3G62090.1 | 44.898 | 98 | 44 | 2 | 100 | 190 | 157 | 251 | 3.27e-16 | 79.0 |
MsaG025485 | AT3G62090.2 | 50.000 | 78 | 36 | 1 | 100 | 177 | 174 | 248 | 4.01e-16 | 79.0 |
MsaG025485 | AT5G67110.2 | 41.667 | 144 | 61 | 5 | 19 | 160 | 14 | 136 | 2.37e-15 | 72.8 |
MsaG025485 | AT1G25330.1 | 35.897 | 117 | 64 | 2 | 113 | 218 | 106 | 222 | 7.92e-15 | 73.2 |
MsaG025485 | AT4G33880.1 | 40.659 | 91 | 49 | 2 | 99 | 186 | 253 | 341 | 1.66e-14 | 74.3 |
MsaG025485 | AT4G28811.1 | 57.500 | 80 | 34 | 0 | 95 | 174 | 335 | 414 | 1.90e-14 | 74.7 |
MsaG025485 | AT5G50915.3 | 39.091 | 110 | 53 | 4 | 90 | 189 | 109 | 214 | 6.14e-14 | 71.6 |
MsaG025485 | AT5G50915.4 | 39.091 | 110 | 53 | 4 | 90 | 189 | 109 | 214 | 6.14e-14 | 71.6 |
MsaG025485 | AT5G50915.1 | 39.091 | 110 | 53 | 4 | 90 | 189 | 109 | 214 | 7.38e-14 | 71.6 |
MsaG025485 | AT5G50915.2 | 39.091 | 110 | 53 | 4 | 90 | 189 | 109 | 214 | 7.38e-14 | 71.6 |
MsaG025485 | AT1G68920.1 | 38.983 | 118 | 59 | 4 | 113 | 228 | 305 | 411 | 7.76e-14 | 72.8 |
MsaG025485 | AT1G68920.4 | 38.983 | 118 | 59 | 4 | 113 | 228 | 305 | 411 | 7.76e-14 | 72.8 |
MsaG025485 | AT1G68920.2 | 38.983 | 118 | 59 | 4 | 113 | 228 | 305 | 411 | 7.76e-14 | 72.8 |
MsaG025485 | AT1G68920.3 | 38.983 | 118 | 59 | 4 | 113 | 228 | 304 | 410 | 7.88e-14 | 72.8 |
MsaG025485 | AT1G02340.1 | 36.000 | 150 | 60 | 7 | 87 | 232 | 123 | 240 | 9.48e-14 | 71.2 |
MsaG025485 | AT1G27740.1 | 37.500 | 104 | 59 | 3 | 99 | 198 | 156 | 257 | 1.03e-13 | 70.9 |
MsaG025485 | AT1G02340.2 | 36.000 | 150 | 60 | 7 | 87 | 232 | 116 | 233 | 1.07e-13 | 71.2 |
MsaG025485 | AT1G26260.4 | 36.792 | 106 | 51 | 2 | 87 | 176 | 184 | 289 | 1.10e-13 | 72.0 |
MsaG025485 | AT1G26260.1 | 36.792 | 106 | 51 | 2 | 87 | 176 | 184 | 289 | 1.10e-13 | 72.0 |
MsaG025485 | AT1G26260.6 | 36.792 | 106 | 51 | 2 | 87 | 176 | 184 | 289 | 1.10e-13 | 72.0 |
MsaG025485 | AT1G26260.2 | 36.792 | 106 | 51 | 2 | 87 | 176 | 184 | 289 | 1.10e-13 | 72.0 |
MsaG025485 | AT1G26260.3 | 36.792 | 106 | 51 | 2 | 87 | 176 | 133 | 238 | 1.18e-13 | 71.6 |
MsaG025485 | AT1G26260.5 | 36.792 | 106 | 51 | 2 | 87 | 176 | 162 | 267 | 1.21e-13 | 71.6 |
MsaG025485 | AT5G43175.1 | 36.957 | 92 | 55 | 1 | 110 | 198 | 131 | 222 | 2.91e-13 | 68.9 |
MsaG025485 | AT3G07340.2 | 42.268 | 97 | 52 | 3 | 82 | 176 | 230 | 324 | 3.68e-13 | 70.5 |
MsaG025485 | AT3G07340.1 | 42.268 | 97 | 52 | 3 | 82 | 176 | 230 | 324 | 4.45e-13 | 70.5 |
MsaG025485 | AT2G14760.1 | 39.506 | 81 | 47 | 1 | 107 | 187 | 235 | 313 | 4.82e-13 | 69.7 |
MsaG025485 | AT3G23690.1 | 35.922 | 103 | 62 | 2 | 75 | 176 | 158 | 257 | 1.01e-12 | 68.9 |
MsaG025485 | AT4G36540.1 | 47.692 | 65 | 33 | 1 | 113 | 176 | 143 | 207 | 1.32e-12 | 68.2 |
MsaG025485 | AT4G36540.2 | 47.692 | 65 | 33 | 1 | 113 | 176 | 143 | 207 | 1.35e-12 | 68.2 |
MsaG025485 | AT5G48560.2 | 49.231 | 65 | 32 | 1 | 113 | 176 | 303 | 367 | 1.46e-12 | 68.9 |
MsaG025485 | AT5G48560.1 | 49.231 | 65 | 32 | 1 | 113 | 176 | 303 | 367 | 1.54e-12 | 68.9 |
MsaG025485 | AT2G14760.3 | 41.791 | 67 | 39 | 0 | 120 | 186 | 259 | 325 | 1.75e-12 | 68.2 |
MsaG025485 | AT2G18300.1 | 47.692 | 65 | 33 | 1 | 113 | 176 | 187 | 251 | 2.31e-12 | 67.8 |
MsaG025485 | AT2G18300.2 | 47.692 | 65 | 33 | 1 | 113 | 176 | 187 | 251 | 2.31e-12 | 67.8 |
MsaG025485 | AT2G18300.3 | 47.692 | 65 | 33 | 1 | 113 | 176 | 187 | 251 | 2.90e-12 | 67.4 |
MsaG025485 | AT1G59640.1 | 44.737 | 76 | 39 | 2 | 102 | 176 | 129 | 202 | 2.96e-12 | 66.6 |
MsaG025485 | AT5G62610.2 | 42.391 | 92 | 44 | 4 | 113 | 195 | 155 | 246 | 3.29e-12 | 66.6 |
MsaG025485 | AT5G62610.1 | 42.391 | 92 | 44 | 4 | 113 | 195 | 155 | 246 | 3.29e-12 | 66.6 |
MsaG025485 | AT4G34530.1 | 44.615 | 65 | 35 | 1 | 113 | 176 | 174 | 238 | 3.34e-12 | 67.0 |
MsaG025485 | AT1G10120.2 | 44.304 | 79 | 41 | 2 | 99 | 176 | 196 | 272 | 4.07e-12 | 67.0 |
MsaG025485 | AT1G10120.1 | 44.304 | 79 | 41 | 2 | 99 | 176 | 196 | 272 | 4.07e-12 | 67.0 |
MsaG025485 | AT1G59640.2 | 44.737 | 76 | 39 | 2 | 102 | 176 | 129 | 202 | 4.48e-12 | 67.0 |
MsaG025485 | AT1G73830.2 | 43.077 | 65 | 36 | 1 | 113 | 176 | 149 | 213 | 1.29e-11 | 64.7 |
MsaG025485 | AT1G73830.1 | 43.077 | 65 | 36 | 1 | 113 | 176 | 149 | 213 | 1.42e-11 | 64.3 |
MsaG025485 | AT1G18400.2 | 41.538 | 65 | 37 | 1 | 113 | 176 | 147 | 211 | 6.50e-11 | 62.4 |
MsaG025485 | AT1G18400.1 | 41.538 | 65 | 37 | 1 | 113 | 176 | 147 | 211 | 8.07e-11 | 62.4 |
Find 71 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATGCACCTTGTTAGAATT+TGG | 0.170114 | 5:-8910308 | None:intergenic |
CTTGGAGCTGAAGCTGTTTA+AGG | 0.179292 | 5:-8910455 | None:intergenic |
TCCATCTTGAAGCTGGTTAA+TGG | 0.190515 | 5:-8909490 | None:intergenic |
AGAGTAGATGTCATATTTAA+AGG | 0.257417 | 5:-8911190 | None:intergenic |
ACAACACAGAAACTTCTTTC+GGG | 0.279808 | 5:+8911314 | MsaT025485.1:CDS |
ACTTCTTTCGGGGTGGAATC+TGG | 0.303794 | 5:+8911325 | MsaT025485.1:CDS |
CAAAATCAGTTGGTGCTTCT+AGG | 0.315049 | 5:+8910089 | MsaT025485.1:CDS |
AATTTATTGCATTCAATTGC+TGG | 0.330715 | 5:-8911510 | None:intergenic |
AACAACACAGAAACTTCTTT+CGG | 0.333925 | 5:+8911313 | MsaT025485.1:CDS |
GCCTTTGTCTCGGATGAGTT+CGG | 0.379108 | 5:+8911141 | MsaT025485.1:CDS |
CAGATGTTGTCATTGAGAAA+TGG | 0.381198 | 5:+8911073 | MsaT025485.1:intron |
AATGTATCTTCCTCTTCTGT+TGG | 0.387184 | 5:+8909558 | MsaT025485.1:CDS |
ACTTTGCAAACTTGTGTTGC+CGG | 0.389000 | 5:+8911699 | MsaT025485.1:CDS |
ATAAAGTAAGGGGTTGTCTT+GGG | 0.390533 | 5:-8911221 | None:intergenic |
CGCTCCTGACTGATCTCTTC+CGG | 0.402152 | 5:-8911718 | None:intergenic |
GAGTAGATGTCATATTTAAA+GGG | 0.403422 | 5:-8911189 | None:intergenic |
GATACATTTAAAGCATGGTT+TGG | 0.405835 | 5:-8909543 | None:intergenic |
TGCATTCTCTGCCTTTGTCT+CGG | 0.410433 | 5:+8911131 | MsaT025485.1:CDS |
TCTTCATCTTCTTCCATGCC+AGG | 0.415588 | 5:+8909465 | MsaT025485.1:CDS |
TAGATTTGATGGATAAAGTA+AGG | 0.423876 | 5:-8911233 | None:intergenic |
TCCTCTTCTGTTGGAGCAGG+AGG | 0.430203 | 5:+8909567 | MsaT025485.1:CDS |
TGCAAAGTATTGTTAGTAGT+AGG | 0.434216 | 5:-8911684 | None:intergenic |
GATAAAGTAAGGGGTTGTCT+TGG | 0.435197 | 5:-8911222 | None:intergenic |
TCTGTGTTGTTAATATATGA+AGG | 0.439351 | 5:-8911301 | None:intergenic |
AGTTCATAATTTGTCAGAAA+AGG | 0.440757 | 5:+8910141 | MsaT025485.1:CDS |
CTGCGATGTAAATATAATGT+TGG | 0.441190 | 5:-8911760 | None:intergenic |
TGCGATGTAAATATAATGTT+GGG | 0.441986 | 5:-8911759 | None:intergenic |
TATTTACATCGCAGTTAAGT+AGG | 0.447661 | 5:+8911769 | MsaT025485.1:CDS |
AACAAGTCTTCGCCGTGTAT+TGG | 0.455886 | 5:-8911481 | None:intergenic |
AAGGGGTTGTCTTGGGGATG+AGG | 0.457089 | 5:-8911214 | None:intergenic |
TCTTCCTCTTCTGTTGGAGC+AGG | 0.460002 | 5:+8909564 | MsaT025485.1:CDS |
GAGATATACAAACCTGTACT+TGG | 0.469577 | 5:-8910473 | None:intergenic |
CATCCTATGTACTTTCATGA+AGG | 0.470473 | 5:+8911106 | MsaT025485.1:CDS |
AGATCTTTCCATCTTGAAGC+TGG | 0.476129 | 5:-8909497 | None:intergenic |
GGCTTACCTCTGAAGATCGT+TGG | 0.483128 | 5:-8911372 | None:intergenic |
GACTTGTTGAGCAGAGAAGA+AGG | 0.487830 | 5:+8910243 | MsaT025485.1:intron |
GGAATCTGGAATCCCAGAAC+AGG | 0.491229 | 5:+8911339 | MsaT025485.1:CDS |
TGAAGCTGGTTAATGGATCC+TGG | 0.492297 | 5:-8909483 | None:intergenic |
ACAGCTTCAGCTCCAAGTAC+AGG | 0.499989 | 5:+8910461 | MsaT025485.1:CDS |
TCCATTAACCAGCTTCAAGA+TGG | 0.520381 | 5:+8909489 | MsaT025485.1:CDS |
GAAGGATAGGAAGACATTGA+TGG | 0.522616 | 5:-8911283 | None:intergenic |
TAAAGTAAGGGGTTGTCTTG+GGG | 0.528478 | 5:-8911220 | None:intergenic |
AGGAAGATACATTTAAAGCA+TGG | 0.529279 | 5:-8909548 | None:intergenic |
TGGTCTAGAAGTTGAATCAA+AGG | 0.533794 | 5:-8909523 | None:intergenic |
GTTGTTAATATATGAAGGAT+AGG | 0.536631 | 5:-8911296 | None:intergenic |
TTGAGAACCGCCTAATAGAC+TGG | 0.541627 | 5:-8911539 | None:intergenic |
TTGAGCAGAGAAGAAGGAGT+AGG | 0.550943 | 5:+8910249 | MsaT025485.1:intron |
TCCTCCTGCTCCAACAGAAG+AGG | 0.551374 | 5:-8909568 | None:intergenic |
AGATTTGATGGATAAAGTAA+GGG | 0.551389 | 5:-8911232 | None:intergenic |
AGAATTTCAGTCGGGCGCAA+TGG | 0.555643 | 5:+8911656 | MsaT025485.1:CDS |
AGCTGTCAAAGAATTTCAGT+CGG | 0.555801 | 5:+8911647 | MsaT025485.1:intron |
GCTGTCAAAGAATTTCAGTC+GGG | 0.565127 | 5:+8911648 | MsaT025485.1:intron |
GATTTGATGGATAAAGTAAG+GGG | 0.581036 | 5:-8911231 | None:intergenic |
CAACACAGAAACTTCTTTCG+GGG | 0.582522 | 5:+8911315 | MsaT025485.1:CDS |
GAAGTTCCAACAAAATCAGT+TGG | 0.585487 | 5:+8910079 | MsaT025485.1:CDS |
CACAGAAACTTCTTTCGGGG+TGG | 0.588598 | 5:+8911318 | MsaT025485.1:CDS |
CTGGTTAATGGATCCTGGCA+TGG | 0.589932 | 5:-8909478 | None:intergenic |
AGTCTATTAGGCGGTTCTCA+AGG | 0.599045 | 5:+8911541 | MsaT025485.1:CDS |
TCGGAGTTGAGTGAAGGAAA+CGG | 0.600777 | 5:+8911160 | MsaT025485.1:CDS |
TCCGAACTCATCCGAGACAA+AGG | 0.607448 | 5:-8911142 | None:intergenic |
TGATTTGTGAAGCCAATACA+CGG | 0.610208 | 5:+8911469 | MsaT025485.1:intron |
AAGCCTTCATGAAAGTACAT+AGG | 0.613283 | 5:-8911109 | None:intergenic |
AAGAAGATGAAGATGAACGA+AGG | 0.614318 | 5:-8909455 | None:intergenic |
ACGTCTCCAACGATCTTCAG+AGG | 0.623983 | 5:+8911366 | MsaT025485.1:CDS |
ATGAGTTCGGAGTTGAGTGA+AGG | 0.628206 | 5:+8911154 | MsaT025485.1:CDS |
GTTGCCGGAAGAGATCAGTC+AGG | 0.629530 | 5:+8911714 | MsaT025485.1:CDS |
TCTAATTCCAAATTCTAACA+AGG | 0.656662 | 5:+8910301 | MsaT025485.1:CDS |
GTTGGAGCAGGAGGACTCAG+TGG | 0.665702 | 5:+8909576 | MsaT025485.1:CDS |
CGGAAGAGATCAGTCAGGAG+CGG | 0.684799 | 5:+8911719 | MsaT025485.1:CDS |
TGAATATGACTGTGAAAGTG+AGG | 0.701990 | 5:+8909611 | MsaT025485.1:CDS |
TAACAATCAAAACAACAACA+TGG | 0.710293 | 5:+8909368 | MsaT025485.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 8909360 | 8911794 | 8909360 | ID=MsaG025485 |
Chr5 | mRNA | 8909360 | 8911794 | 8909360 | ID=MsaT025485.1;Parent=MsaG025485 |
Chr5 | exon | 8909360 | 8909632 | 8909360 | ID=MsaT025485.1.exon1;Parent=MsaT025485.1 |
Chr5 | CDS | 8909360 | 8909632 | 8909360 | ID=cds.MsaT025485.1;Parent=MsaT025485.1 |
Chr5 | exon | 8910055 | 8910162 | 8910055 | ID=MsaT025485.1.exon2;Parent=MsaT025485.1 |
Chr5 | CDS | 8910055 | 8910162 | 8910055 | ID=cds.MsaT025485.1;Parent=MsaT025485.1 |
Chr5 | exon | 8910257 | 8910322 | 8910257 | ID=MsaT025485.1.exon3;Parent=MsaT025485.1 |
Chr5 | CDS | 8910257 | 8910322 | 8910257 | ID=cds.MsaT025485.1;Parent=MsaT025485.1 |
Chr5 | exon | 8910417 | 8910482 | 8910417 | ID=MsaT025485.1.exon4;Parent=MsaT025485.1 |
Chr5 | CDS | 8910417 | 8910482 | 8910417 | ID=cds.MsaT025485.1;Parent=MsaT025485.1 |
Chr5 | exon | 8911076 | 8911387 | 8911076 | ID=MsaT025485.1.exon5;Parent=MsaT025485.1 |
Chr5 | CDS | 8911076 | 8911387 | 8911076 | ID=cds.MsaT025485.1;Parent=MsaT025485.1 |
Chr5 | exon | 8911481 | 8911562 | 8911481 | ID=MsaT025485.1.exon6;Parent=MsaT025485.1 |
Chr5 | CDS | 8911481 | 8911562 | 8911481 | ID=cds.MsaT025485.1;Parent=MsaT025485.1 |
Chr5 | exon | 8911649 | 8911794 | 8911649 | ID=MsaT025485.1.exon7;Parent=MsaT025485.1 |
Chr5 | CDS | 8911649 | 8911794 | 8911649 | ID=cds.MsaT025485.1;Parent=MsaT025485.1 |
Gene Sequence |
Protein sequence |