AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG025490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG025490 MtrunA17_Chr5g0402091 72.805 353 28 3 1 285 1 353 0.0 505
MsaG025490 MtrunA17_Chr5g0402111 59.794 291 50 5 3 227 2 291 7.67e-110 320
MsaG025490 MtrunA17_Chr4g0052981 48.986 345 101 6 3 283 2 335 1.98e-104 307
MsaG025490 MtrunA17_Chr8g0375141 48.696 345 102 6 3 283 41 374 2.60e-100 298
MsaG025490 MtrunA17_Chr4g0052961 48.986 345 101 6 3 283 39 372 9.32e-100 296
MsaG025490 MtrunA17_Chr2g0322401 35.135 259 104 5 4 203 5 258 7.56e-42 148
MsaG025490 MtrunA17_Chr2g0288841 31.176 340 164 7 3 285 4 330 9.60e-41 146
MsaG025490 MtrunA17_Chr4g0025041 32.188 320 145 7 4 264 3 309 1.34e-39 142
MsaG025490 MtrunA17_Chr2g0276831 36.607 224 95 6 4 185 10 228 8.44e-39 139
MsaG025490 MtrunA17_Chr3g0130151 32.584 267 103 8 3 201 243 500 5.33e-31 121
MsaG025490 MtrunA17_Chr5g0430501 35.484 217 101 7 1 185 1 210 3.06e-30 119
MsaG025490 MtrunA17_Chr8g0384301 30.855 269 109 8 1 201 296 555 1.83e-28 114
MsaG025490 MtrunA17_Chr1g0205931 30.374 214 109 6 4 184 55 261 1.47e-26 108
MsaG025490 MtrunA17_Chr5g0402601 26.103 272 119 7 3 201 371 633 6.42e-25 104
MsaG025490 MtrunA17_Chr7g0272841 29.825 228 114 7 4 195 68 285 1.02e-24 103
MsaG025490 MtrunA17_Chr8g0386981 28.723 282 130 7 4 220 408 683 1.16e-22 97.8
MsaG025490 MtrunA17_Chr1g0202831 28.571 287 153 9 4 260 411 675 9.89e-22 95.1
MsaG025490 MtrunA17_Chr5g0424501 32.273 220 107 8 3 192 191 398 3.26e-21 92.8
MsaG025490 MtrunA17_Chr3g0133541 28.767 219 112 8 3 185 306 516 1.19e-19 89.0
MsaG025490 MtrunA17_Chr5g0424581 31.754 211 103 8 3 183 124 323 3.11e-19 86.7
MsaG025490 MtrunA17_Chr4g0038091 29.327 208 115 6 4 185 20 221 3.81e-19 87.4
MsaG025490 MtrunA17_Chr4g0051191 31.132 212 108 6 3 185 162 364 5.98e-19 86.3
MsaG025490 MtrunA17_Chr5g0424651 31.754 211 103 8 3 183 320 519 6.46e-19 86.7
MsaG025490 MtrunA17_Chr4g0038501 28.365 208 117 6 4 185 20 221 1.54e-18 85.9
MsaG025490 MtrunA17_Chr2g0317001 26.936 297 153 13 8 270 19 285 5.27e-18 84.0
MsaG025490 MtrunA17_Chr5g0424531 37.692 130 56 3 74 180 84 211 4.93e-17 79.3
MsaG025490 MtrunA17_Chr5g0419441 27.179 195 114 3 10 181 245 434 1.57e-16 79.7
MsaG025490 MtrunA17_Chr3g0107011 26.291 213 122 7 1 185 11 216 2.87e-16 78.6
MsaG025490 MtrunA17_Chr4g0013131 25.843 267 154 9 1 234 9 264 6.18e-16 77.4
MsaG025490 MtrunA17_Chr7g0245031 28.500 200 113 6 8 183 152 345 1.00e-15 77.0
MsaG025490 MtrunA17_Chr3g0115171 28.251 223 84 6 62 224 343 549 1.04e-15 77.0
MsaG025490 MtrunA17_Chr2g0286501 27.586 203 108 7 10 183 55 247 1.41e-15 77.0
MsaG025490 MtrunA17_Chr8g0346081 27.700 213 108 9 7 186 20 219 2.95e-15 75.5
MsaG025490 MtrunA17_Chr5g0428031 28.713 202 106 10 7 179 12 204 6.33e-15 74.3
MsaG025490 MtrunA17_Chr8g0346071 27.700 213 108 9 7 186 20 219 8.88e-15 73.9
MsaG025490 MtrunA17_Chr3g0129721 25.604 207 122 5 4 184 25 225 1.35e-14 72.4
MsaG025490 MtrunA17_Chr4g0008561 26.442 208 113 5 3 180 18 215 2.35e-14 73.2
MsaG025490 MtrunA17_Chr1g0190831 26.442 208 125 5 1 184 1 204 3.52e-14 72.4
MsaG025490 MtrunA17_Chr6g0487231 26.904 197 114 6 8 180 73 263 3.77e-14 71.6
MsaG025490 MtrunA17_Chr4g0063881 27.000 200 112 8 7 179 14 206 4.01e-14 72.0
MsaG025490 MtrunA17_Chr6g0449691 26.236 263 127 6 10 209 90 348 4.21e-14 72.0
MsaG025490 MtrunA17_Chr5g0432471 25.926 216 119 7 1 185 9 214 4.51e-14 72.0
MsaG025490 MtrunA17_Chr7g0244521 27.778 216 115 9 1 185 9 214 5.84e-14 71.6
MsaG025490 MtrunA17_Chr4g0070851 26.754 228 121 9 54 250 119 331 5.89e-14 71.2
MsaG025490 MtrunA17_Chr5g0441011 27.014 211 114 9 7 186 16 217 7.41e-14 71.2
MsaG025490 MtrunA17_Chr2g0299991 27.053 207 117 7 8 186 74 274 1.19e-13 70.5
MsaG025490 MtrunA17_Chr1g0190131 29.208 202 105 8 10 183 15 206 1.24e-13 69.3
MsaG025490 MtrunA17_Chr1g0170551 26.977 215 122 7 8 198 11 214 3.79e-13 69.7
MsaG025490 MtrunA17_Chr8g0379091 24.519 208 122 7 7 186 29 229 4.21e-13 69.3
MsaG025490 MtrunA17_Chr2g0284011 25.926 216 119 8 1 185 9 214 4.97e-13 68.9
MsaG025490 MtrunA17_Chr2g0302431 27.053 207 117 7 7 185 23 223 7.31e-13 68.2
MsaG025490 MtrunA17_Chr3g0140631 29.000 200 112 7 7 183 40 232 7.69e-13 67.4
MsaG025490 MtrunA17_Chr1g0205421 26.852 216 116 8 1 184 9 214 9.37e-13 68.2
MsaG025490 MtrunA17_Chr8g0385341 26.471 204 117 6 7 183 33 230 2.20e-12 67.0
MsaG025490 MtrunA17_Chr1g0166101 27.184 206 116 7 8 185 28 227 3.87e-12 66.2
MsaG025490 MtrunA17_Chr7g0260191 24.880 209 127 7 1 184 1 204 6.67e-12 65.9
MsaG025490 MtrunA17_Chr1g0185221 25.359 209 126 7 1 184 1 204 7.76e-12 65.5
MsaG025490 MtrunA17_Chr6g0468751 25.238 210 126 8 1 185 16 219 9.89e-12 65.1
MsaG025490 MtrunA17_Chr7g0258051 30.469 128 66 3 82 186 91 218 1.87e-11 64.3
MsaG025490 MtrunA17_Chr1g0188031 26.570 207 118 6 8 185 24 225 1.89e-11 63.9
MsaG025490 MtrunA17_Chr8g0355131 22.959 196 121 4 30 200 75 265 2.65e-11 63.9
MsaG025490 MtrunA17_Chr2g0304111 25.980 204 111 10 7 179 26 220 3.36e-11 63.2
MsaG025490 MtrunA17_Chr5g0397101 26.570 207 119 6 4 183 67 267 5.20e-11 62.8
MsaG025490 MtrunA17_Chr8g0387671 26.794 209 116 7 4 183 66 266 7.42e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG025490 AT3G50310.1 40.730 356 119 7 4 283 3 342 7.20e-81 248
MsaG025490 AT4G36950.1 41.739 345 125 7 4 283 3 336 1.14e-80 247
MsaG025490 AT5G67080.1 40.896 357 119 9 4 283 3 344 8.64e-79 243
MsaG025490 AT4G26890.1 35.174 344 153 9 3 283 4 340 1.06e-50 173
MsaG025490 AT5G55090.1 34.571 350 152 11 2 283 4 344 1.16e-48 167
MsaG025490 AT5G55090.2 36.806 288 116 7 2 230 66 346 4.90e-48 167
MsaG025490 AT2G32510.1 34.812 293 121 8 4 232 3 289 1.42e-44 155
MsaG025490 AT1G05100.1 33.939 330 133 11 3 264 2 314 1.62e-39 141
MsaG025490 AT2G34290.1 37.321 209 96 5 8 183 5 211 1.94e-37 134
MsaG025490 AT2G05060.1 37.198 207 101 3 8 185 18 224 9.79e-36 130
MsaG025490 AT1G07150.2 30.769 260 117 5 4 202 9 266 5.07e-35 132
MsaG025490 AT1G07150.1 30.769 260 117 5 4 202 23 280 6.25e-35 132
MsaG025490 AT2G30040.1 35.238 210 99 4 4 185 17 217 9.24e-34 128
MsaG025490 AT2G42550.1 35.211 213 103 6 8 185 9 221 1.10e-33 125
MsaG025490 AT5G27510.1 36.842 209 96 6 8 183 9 214 3.52e-32 120
MsaG025490 AT5G27790.1 34.259 216 100 6 8 183 24 237 2.72e-31 119
MsaG025490 AT3G45670.1 30.275 218 116 4 1 185 94 308 2.82e-31 120
MsaG025490 AT2G41930.1 34.884 215 100 5 8 183 9 222 2.91e-31 119
MsaG025490 AT2G41920.1 33.803 213 101 5 11 183 13 225 9.82e-31 117
MsaG025490 AT2G41910.1 33.200 250 110 9 8 203 10 256 7.06e-30 116
MsaG025490 AT3G45790.1 31.222 221 111 6 3 185 95 312 7.21e-28 110
MsaG025490 AT5G12090.1 33.175 211 103 7 8 183 31 238 2.80e-27 109
MsaG025490 AT3G46140.1 27.465 284 124 7 3 207 95 375 3.08e-27 109
MsaG025490 AT1G53570.5 36.022 186 104 6 4 184 214 389 6.15e-27 110
MsaG025490 AT1G53570.7 33.654 208 105 6 4 184 214 415 2.78e-26 108
MsaG025490 AT1G53570.6 33.654 208 105 6 4 184 214 415 2.79e-26 108
MsaG025490 AT1G53570.2 33.654 208 105 6 4 184 214 415 3.26e-26 108
MsaG025490 AT1G53570.3 33.654 208 105 6 4 184 214 415 3.26e-26 108
MsaG025490 AT1G53570.4 33.654 208 105 6 4 184 214 415 3.49e-26 108
MsaG025490 AT1G53570.1 33.654 208 105 6 4 184 214 415 3.53e-26 108
MsaG025490 AT5G66850.1 28.413 271 112 8 4 201 346 607 5.63e-26 107
MsaG025490 AT5G66850.2 26.398 322 143 9 4 252 346 646 6.38e-26 107
MsaG025490 AT3G46160.1 27.536 276 122 8 3 201 58 332 1.05e-25 105
MsaG025490 AT3G06030.1 29.333 225 113 7 4 192 68 282 2.77e-25 105
MsaG025490 AT1G54960.1 26.562 320 150 9 4 248 68 377 2.88e-25 105
MsaG025490 AT1G54960.2 26.562 320 150 9 4 248 68 377 2.88e-25 105
MsaG025490 AT4G26070.5 29.066 289 160 9 8 267 59 331 5.74e-25 102
MsaG025490 AT1G09000.2 28.223 287 149 9 3 253 68 333 5.85e-25 104
MsaG025490 AT1G09000.1 28.223 287 149 9 3 253 68 333 6.37e-25 104
MsaG025490 AT4G26070.4 29.066 289 160 9 8 267 71 343 8.12e-25 102
MsaG025490 AT4G26070.2 29.066 289 160 9 8 267 72 344 1.05e-24 102
MsaG025490 AT4G26070.3 29.066 289 160 9 8 267 72 344 1.05e-24 102
MsaG025490 AT4G08500.1 33.180 217 101 9 1 185 330 534 7.36e-24 101
MsaG025490 AT2G40580.1 32.258 217 100 8 5 182 17 225 2.60e-21 92.0
MsaG025490 AT3G61960.2 29.108 213 109 8 3 184 9 210 7.68e-21 92.4
MsaG025490 AT2G18530.1 32.716 162 70 3 80 202 26 187 7.81e-21 88.6
MsaG025490 AT3G61960.1 29.108 213 109 8 3 184 9 210 8.26e-21 92.4
MsaG025490 AT1G63700.1 31.250 208 110 6 4 184 400 601 1.21e-20 92.4
MsaG025490 AT1G63700.2 31.250 208 110 6 4 184 400 601 1.21e-20 92.4
MsaG025490 AT4G26070.1 28.436 211 119 7 8 192 72 276 2.58e-20 89.0
MsaG025490 AT4G08470.1 31.336 217 105 9 1 185 300 504 3.40e-20 90.5
MsaG025490 AT4G08480.1 31.163 215 104 9 3 185 500 702 5.99e-20 90.1
MsaG025490 AT4G08470.3 31.336 217 105 9 1 185 218 422 2.24e-19 88.2
MsaG025490 AT3G13530.1 28.365 208 117 6 4 185 20 221 2.02e-18 85.9
MsaG025490 AT3G07980.2 27.885 208 118 6 4 185 20 221 2.96e-18 85.5
MsaG025490 AT3G07980.1 27.885 208 118 6 4 185 20 221 3.20e-18 85.1
MsaG025490 AT3G15220.1 29.864 221 99 8 82 270 88 284 1.02e-17 83.6
MsaG025490 AT3G10540.1 27.468 233 123 7 7 204 48 269 6.95e-17 80.9
MsaG025490 AT5G18700.1 29.146 199 106 7 10 183 10 198 1.74e-16 80.1
MsaG025490 AT3G08730.1 29.500 200 111 6 8 183 138 331 2.36e-16 79.3
MsaG025490 AT3G08730.2 29.500 200 111 6 8 183 138 331 2.36e-16 79.3
MsaG025490 AT1G30270.2 24.506 253 154 10 7 229 34 279 2.91e-16 79.0
MsaG025490 AT3G04530.1 27.230 213 126 4 10 197 17 225 3.25e-16 77.4
MsaG025490 AT1G30270.1 24.506 253 154 10 7 229 34 279 3.56e-16 78.6
MsaG025490 AT3G08720.1 29.500 200 111 6 8 183 144 337 4.75e-16 78.2
MsaG025490 AT3G08720.3 29.500 200 111 6 8 183 144 337 4.75e-16 78.2
MsaG025490 AT3G08720.4 29.500 200 111 6 8 183 144 337 4.75e-16 78.2
MsaG025490 AT3G08720.2 29.500 200 111 6 8 183 144 337 4.75e-16 78.2
MsaG025490 AT4G12020.10 29.381 194 114 7 4 185 1618 1800 5.16e-16 78.6
MsaG025490 AT4G12020.3 29.381 194 114 7 4 185 1626 1808 5.31e-16 78.6
MsaG025490 AT4G12020.5 28.641 206 116 7 4 185 1551 1749 6.20e-16 78.6
MsaG025490 AT5G04510.3 27.570 214 114 6 7 185 47 254 6.26e-16 76.6
MsaG025490 AT4G12020.4 28.641 206 116 7 4 185 1618 1816 6.58e-16 78.6
MsaG025490 AT4G12020.2 28.641 206 116 7 4 185 1626 1824 7.03e-16 78.2
MsaG025490 AT5G04510.1 27.004 237 119 8 7 204 47 268 7.65e-16 77.8
MsaG025490 AT2G40560.1 28.777 278 125 11 10 220 25 296 8.06e-16 76.6
MsaG025490 AT1G69220.1 27.692 195 113 3 10 181 255 444 8.40e-16 77.8
MsaG025490 AT5G04510.2 27.039 233 124 7 7 204 47 268 1.19e-15 77.0
MsaG025490 AT3G23000.1 26.570 207 118 7 7 185 28 228 1.59e-15 76.6
MsaG025490 AT1G69220.2 31.250 144 72 2 61 181 278 417 1.92e-15 76.6
MsaG025490 AT1G53165.2 27.570 214 103 7 82 264 88 280 2.30e-15 76.6
MsaG025490 AT1G53165.1 27.570 214 103 7 82 264 88 280 2.50e-15 76.3
MsaG025490 AT1G53165.3 28.302 212 104 7 82 264 88 280 2.53e-15 76.3
MsaG025490 AT2G40500.1 29.902 204 106 7 9 181 22 219 5.37e-15 73.9
MsaG025490 AT1G50240.3 28.000 200 113 6 8 183 10 202 1.72e-14 73.9
MsaG025490 AT1G50240.2 28.000 200 113 6 8 183 10 202 1.72e-14 73.9
MsaG025490 AT5G45820.1 26.667 210 113 8 1 179 9 208 1.96e-14 73.6
MsaG025490 AT1G49180.2 29.012 162 84 4 47 183 51 206 2.09e-14 73.2
MsaG025490 AT1G29230.1 24.561 228 137 7 1 200 71 291 2.17e-14 73.6
MsaG025490 AT1G49180.1 29.012 162 84 4 47 183 51 206 2.59e-14 72.8
MsaG025490 AT4G29810.3 26.818 220 129 7 8 201 83 296 3.70e-14 72.0
MsaG025490 AT2G30360.1 26.761 213 113 9 7 186 24 226 6.52e-14 72.0
MsaG025490 AT5G35410.2 26.263 198 116 6 7 179 14 206 6.88e-14 71.6
MsaG025490 AT4G29810.1 27.488 211 121 7 8 192 74 278 6.96e-14 71.2
MsaG025490 AT4G29810.2 26.818 220 129 7 8 201 83 296 7.06e-14 71.6
MsaG025490 AT5G56580.1 24.514 257 157 6 8 240 74 317 7.46e-14 71.2
MsaG025490 AT5G35410.1 26.263 198 116 6 7 179 14 206 7.82e-14 71.6
MsaG025490 AT2G45490.2 28.638 213 124 7 7 197 25 231 1.72e-13 69.3
MsaG025490 AT5G45810.1 24.155 207 122 7 7 185 31 230 1.87e-13 70.5
MsaG025490 AT2G45490.1 25.926 243 147 7 7 222 25 261 2.13e-13 69.3
MsaG025490 AT3G63280.4 25.359 209 126 7 1 184 55 258 2.80e-13 70.1
MsaG025490 AT4G24400.1 27.228 202 109 7 7 179 12 204 2.81e-13 70.1
MsaG025490 AT3G63280.2 25.359 209 126 7 1 184 1 204 2.86e-13 70.1
MsaG025490 AT3G63280.3 25.359 209 126 7 1 184 1 204 2.86e-13 70.1
MsaG025490 AT3G63280.1 25.359 209 126 7 1 184 1 204 2.86e-13 70.1
MsaG025490 AT4G24400.2 27.228 202 109 7 7 179 12 204 3.43e-13 69.7
MsaG025490 AT5G40440.5 28.718 195 111 5 10 180 7 197 3.63e-13 69.7
MsaG025490 AT2G34180.1 25.822 213 123 7 1 185 54 259 3.80e-13 69.7
MsaG025490 AT3G53930.1 25.728 206 121 6 1 180 17 216 4.12e-13 69.7
MsaG025490 AT3G53930.2 25.728 206 121 6 1 180 17 216 4.12e-13 69.7
MsaG025490 AT5G40440.4 28.718 195 111 5 10 180 89 279 4.50e-13 69.3
MsaG025490 AT5G40440.1 28.718 195 111 5 10 180 89 279 4.50e-13 69.3
MsaG025490 AT5G40440.6 28.718 195 111 5 10 180 71 261 4.83e-13 69.3
MsaG025490 AT5G40440.3 28.718 195 111 5 10 180 71 261 4.83e-13 69.3
MsaG025490 AT5G40440.2 28.718 195 111 5 10 180 71 261 4.83e-13 69.3
MsaG025490 AT3G20860.1 24.402 209 131 4 1 186 1 205 5.51e-13 68.9
MsaG025490 AT3G29160.3 26.667 210 123 8 1 185 17 220 5.59e-13 68.9
MsaG025490 AT1G08650.2 27.570 214 120 7 10 197 21 225 6.04e-13 67.8
MsaG025490 AT1G08650.1 27.570 214 120 7 10 197 21 225 6.39e-13 67.8
MsaG025490 AT5G39440.1 28.230 209 120 7 1 185 16 218 6.43e-13 68.9
MsaG025490 AT3G29160.1 26.667 210 123 8 1 185 17 220 6.95e-13 68.9
MsaG025490 AT3G29160.2 26.667 210 123 8 1 185 17 220 6.95e-13 68.9
MsaG025490 AT2G26980.2 25.896 251 149 10 7 227 17 260 7.37e-13 67.4
MsaG025490 AT4G18700.1 22.481 258 162 9 7 234 29 278 7.91e-13 68.6
MsaG025490 AT2G38490.1 25.962 208 119 7 7 186 31 231 8.49e-13 68.6
MsaG025490 AT2G26980.1 26.570 207 118 8 7 185 17 217 9.06e-13 68.2
MsaG025490 AT2G26980.3 26.570 207 118 8 7 185 17 217 1.13e-12 68.2
MsaG025490 AT2G26980.4 26.570 207 118 8 7 185 27 227 1.19e-12 68.2
MsaG025490 AT5G57630.2 25.604 207 116 6 7 185 15 211 1.25e-12 67.8
MsaG025490 AT5G57630.1 25.604 207 116 6 7 185 15 211 1.26e-12 67.8
MsaG025490 AT2G26980.5 26.570 207 118 8 7 185 17 217 1.31e-12 67.8
MsaG025490 AT3G17510.1 25.121 207 121 6 7 185 23 223 1.58e-12 67.8
MsaG025490 AT1G01140.3 25.431 232 132 11 3 203 18 239 1.67e-12 67.8
MsaG025490 AT1G01140.1 25.431 232 132 11 3 203 18 239 1.72e-12 67.8
MsaG025490 AT3G04810.2 25.481 208 127 5 1 184 1 204 2.11e-12 67.4
MsaG025490 AT3G04810.1 25.481 208 127 5 1 184 1 204 2.11e-12 67.4
MsaG025490 AT3G04810.3 25.481 208 127 5 1 184 1 204 2.11e-12 67.4
MsaG025490 AT3G01090.3 25.238 210 126 8 1 185 16 219 2.99e-12 67.0
MsaG025490 AT3G01090.1 25.238 210 126 8 1 185 16 219 2.99e-12 67.0
MsaG025490 AT3G01090.2 25.238 210 126 8 1 185 39 242 3.06e-12 67.0
MsaG025490 AT1G01140.2 25.116 215 121 10 3 186 18 223 3.55e-12 66.6
MsaG025490 AT5G01810.3 25.000 216 121 7 1 185 9 214 3.59e-12 66.6
MsaG025490 AT2G25880.4 28.788 198 111 7 7 181 41 231 3.79e-12 65.9
MsaG025490 AT2G38910.1 26.148 283 162 12 7 249 137 412 3.95e-12 66.6
MsaG025490 AT2G25880.1 28.788 198 111 7 7 181 28 218 4.31e-12 65.5
MsaG025490 AT5G01810.1 25.000 216 121 7 1 185 9 214 4.32e-12 66.2
MsaG025490 AT5G01810.2 25.000 216 121 7 1 185 9 214 4.32e-12 66.2
MsaG025490 AT4G32830.1 29.000 200 112 7 7 183 34 226 4.52e-12 65.5
MsaG025490 AT5G28290.3 24.519 208 129 5 1 184 1 204 5.31e-12 66.2
MsaG025490 AT1G54510.4 25.126 199 121 5 10 184 10 204 5.42e-12 66.2
MsaG025490 AT1G54510.2 25.126 199 121 5 10 184 10 204 5.42e-12 66.2
MsaG025490 AT1G54510.1 25.126 199 121 5 10 184 10 204 5.42e-12 66.2
MsaG025490 AT1G54510.3 25.126 199 121 5 10 184 10 204 5.42e-12 66.2
MsaG025490 AT5G28290.1 24.519 208 129 5 1 184 1 204 5.74e-12 66.2
MsaG025490 AT5G28290.2 24.519 208 129 5 1 184 1 204 5.74e-12 66.2
MsaG025490 AT1G12680.1 23.116 199 120 6 3 179 106 293 6.74e-12 65.9
MsaG025490 AT2G25880.3 29.293 198 110 7 7 181 89 279 8.65e-12 65.1
MsaG025490 AT5G21326.1 25.238 210 117 7 7 185 16 216 1.20e-11 65.1
MsaG025490 AT3G57530.2 23.874 222 136 7 3 197 62 277 2.77e-11 63.9
MsaG025490 AT3G57530.1 23.982 221 135 7 4 197 63 277 5.31e-11 63.2
MsaG025490 AT5G57630.3 28.000 125 65 3 84 185 1 123 5.70e-11 62.8
MsaG025490 AT2G41860.1 24.771 218 131 7 7 197 57 268 5.78e-11 63.2
MsaG025490 AT1G51660.1 24.188 277 153 11 3 248 78 328 7.88e-11 62.4
MsaG025490 AT1G30270.3 26.437 174 98 6 84 229 11 182 9.72e-11 62.0

Find 64 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCTCGTTTACGAGAAAA+TGG 0.221247 5:+8958952 None:intergenic
ACACTCTCATTCACTGCTTC+TGG 0.236744 5:+8958562 None:intergenic
ATGAATCGCCGGCAGATATA+TGG 0.267258 5:-8958537 MsaT025490.1:CDS
CCACATATAATTAAGTGTTT+TGG 0.321123 5:-8958903 MsaT025490.1:CDS
AAACAAATACTTGATAGTTT+AGG 0.344525 5:-8958933 MsaT025490.1:CDS
ACAAAACATTCTTGTATTTG+AGG 0.370018 5:-8958682 MsaT025490.1:CDS
TCACATAATTCCTTTGCATC+AGG 0.402106 5:+8958177 None:intergenic
GAACCATGGTGGCAAGTTAC+CGG 0.409045 5:-8958793 MsaT025490.1:CDS
CACTCTCATTCACTGCTTCT+GGG 0.411687 5:+8958563 None:intergenic
CCAAAACACTTAATTATATG+TGG 0.453734 5:+8958903 None:intergenic
TGAATCGCCGGCAGATATAT+GGG 0.463203 5:-8958536 MsaT025490.1:CDS
TGGTTGCGCTGTTGTGGAGA+TGG 0.464282 5:-8958509 MsaT025490.1:CDS
GTAAAATCGAAGTGAGTTCT+CGG 0.473600 5:+8958234 None:intergenic
ATGTGATGAAACTGTTTCAT+TGG 0.477120 5:-8958289 MsaT025490.1:CDS
TTAAGGATCCTCTGAAAAGA+TGG 0.482719 5:-8958347 MsaT025490.1:intron
GGCTCTTGGTTGCGCTGTTG+TGG 0.483533 5:-8958515 MsaT025490.1:CDS
CCGGCAGATATATGGGCTCT+TGG 0.493276 5:-8958529 MsaT025490.1:CDS
CGCTGTTGTGGAGATGGCTA+CGG 0.494813 5:-8958503 MsaT025490.1:CDS
AACATTCTTGTATTTGAGGA+TGG 0.496167 5:-8958678 MsaT025490.1:CDS
TTTCTCGTTTACGAGAAAAT+GGG 0.497377 5:+8958953 None:intergenic
CAGATCAAAGACCGTTGGAT+TGG 0.501690 5:-8958098 MsaT025490.1:CDS
CAGGATCAAACTTTCGAAAA+CGG 0.504452 5:-8958879 MsaT025490.1:CDS
TACACAAGGTCTATCGTTGA+AGG 0.522521 5:-8958753 MsaT025490.1:CDS
AGTCGTTGAAGCCTCTCGTC+CGG 0.523075 5:+8958126 None:intergenic
TGGGTGTGTGGCTAAGTTGA+CGG 0.524194 5:+8959034 None:intergenic
AACATGAAGAATTGGGTTCG+AGG 0.529690 5:-8959086 MsaT025490.1:CDS
GACTTTGCCTCCTGATGCAA+AGG 0.533464 5:-8958187 MsaT025490.1:CDS
CAAAACACTTAATTATATGT+GGG 0.534740 5:+8958904 None:intergenic
GACTGCGGTGAGCGACGGAA+AGG 0.536237 5:+8958998 None:intergenic
CCAAGAGCCCATATATCTGC+CGG 0.540702 5:+8958529 None:intergenic
CATAATTCCTTTGCATCAGG+AGG 0.544593 5:+8958180 None:intergenic
TGGGTTCGAGGTAAGATGCT+AGG 0.545165 5:-8959074 MsaT025490.1:CDS
TCGAAGTGAGTTCTCGGAGA+TGG 0.547666 5:+8958240 None:intergenic
TAACGATGAACGAGATTCTC+CGG 0.553449 5:+8958774 None:intergenic
CCACTGCTTACATTCCATGC+AGG 0.554859 5:+8958475 None:intergenic
GGCTAAGTTGACGGTGGCGA+AGG 0.555105 5:+8959043 None:intergenic
GGTGAGCGACGGAAAGGTAT+CGG 0.561101 5:+8959004 None:intergenic
TGAGAGTGTTTATGAATCGC+CGG 0.566966 5:-8958548 MsaT025490.1:CDS
ATTGGTCAGAATCCGATGCT+TGG 0.572888 5:-8958080 MsaT025490.1:CDS
CGAGGTAAGATGCTAGGTAG+TGG 0.573090 5:-8959068 MsaT025490.1:CDS
GCTGTTGTGGAGATGGCTAC+GGG 0.583257 5:-8958502 MsaT025490.1:CDS
ACCATGGTTCTTGAGTTGAT+CGG 0.583444 5:+8958806 None:intergenic
GAAAGGTATCGGAATTCTGT+GGG 0.588310 5:+8959015 None:intergenic
CTCAAACATATTCACAACAA+AGG 0.594216 5:-8958729 MsaT025490.1:CDS
TGGCTACGGGTAAACCTGCA+TGG 0.594217 5:-8958489 MsaT025490.1:CDS
TCTCCGGTAACTTGCCACCA+TGG 0.604353 5:+8958790 None:intergenic
AATCACAGATCAAAGACCGT+TGG 0.604798 5:-8958103 MsaT025490.1:CDS
GGAAAGGTATCGGAATTCTG+TGG 0.605993 5:+8959014 None:intergenic
TGTGAACTGAAATTTGAGCA+AGG 0.610487 5:-8958159 MsaT025490.1:CDS
ACTCTCATTCACTGCTTCTG+GGG 0.615066 5:+8958564 None:intergenic
AAAATGGGAGTCGTAAGTAT+CGG 0.616734 5:+8958968 None:intergenic
AAAACACTTAATTATATGTG+GGG 0.626437 5:+8958905 None:intergenic
CCGAACAAAACACCAAGCAT+CGG 0.628589 5:+8958068 None:intergenic
ATCGGAATTCTGTGGGTGTG+TGG 0.635270 5:+8959022 None:intergenic
TTTCTAGAATATGCTGCTGG+CGG 0.641504 5:-8958837 MsaT025490.1:CDS
TCCGATCAACTCAAGAACCA+TGG 0.648587 5:-8958807 MsaT025490.1:CDS
ATGGGAGTCGTAAGTATCGG+AGG 0.650186 5:+8958971 None:intergenic
TCGGATTCTGACCAATCCAA+CGG 0.652192 5:+8958087 None:intergenic
ATCTCGTTCATCGTTACACA+AGG 0.660120 5:-8958767 MsaT025490.1:CDS
GGAGATGGTGACATTGACAA+TGG 0.663444 5:+8958255 None:intergenic
GTGTGTGGCTAAGTTGACGG+TGG 0.725267 5:+8959037 None:intergenic
GCTTCTGGGGACATATACAA+CGG 0.726176 5:+8958577 None:intergenic
ATGTTTCAAAAGCATCTCTG+CGG 0.729058 5:+8958323 None:intergenic
GATCAACTCAAGAACCATGG+TGG 0.746637 5:-8958804 MsaT025490.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 8958059 8959105 8958059 ID=MsaG025490
Chr5 mRNA 8958059 8959105 8958059 ID=MsaT025490.1;Parent=MsaG025490
Chr5 exon 8958059 8958364 8958059 ID=MsaT025490.1.exon3;Parent=MsaT025490.1
Chr5 CDS 8958059 8958364 8958059 ID=cds.MsaT025490.1;Parent=MsaT025490.1
Chr5 exon 8958486 8958606 8958486 ID=MsaT025490.1.exon2;Parent=MsaT025490.1
Chr5 CDS 8958486 8958606 8958486 ID=cds.MsaT025490.1;Parent=MsaT025490.1
Chr5 exon 8958675 8959105 8958675 ID=MsaT025490.1.exon1;Parent=MsaT025490.1
Chr5 CDS 8958675 8959105 8958675 ID=cds.MsaT025490.1;Parent=MsaT025490.1
Gene Sequence

>MsaT025490.1

ATGAAGAATTGGGTTCGAGGTAAGATGCTAGGTAGTGGCACCTTCGCCACCGTCAACTTAGCCACACACCCACAGAATTCCGATACCTTTCCGTCGCTCACCGCAGTCAAAACCTCCGATACTTACGACTCCCATTTTCTCGTAAACGAGAAACAAATACTTGATAGTTTAGGATCATCCCCACATATAATTAAGTGTTTTGGTCAGGATCAAACTTTCGAAAACGGTGAAGAGTGTTATAATATTTTTCTAGAATATGCTGCTGGCGGTACTCTCTCCGATCAACTCAAGAACCATGGTGGCAAGTTACCGGAGAATCTCGTTCATCGTTACACAAGGTCTATCGTTGAAGGACTCAAACATATTCACAACAAAGGCTTTGTTCACTGTGATTTGAAGCTACAAAACATTCTTGTATTTGAGGATGGCGAAGGAACTCCGTTGTATATGTCCCCAGAAGCAGTGAATGAGAGTGTTTATGAATCGCCGGCAGATATATGGGCTCTTGGTTGCGCTGTTGTGGAGATGGCTACGGGTAAACCTGCATGGAATGATCCTCTGAAAAGATGGACCGCAGAGATGCTTTTGAAACATGAGTTTATCTCATGTGATGAAACTGTTTCATTGGTGAAAGAGTTGCCATTGTCAATGTCACCATCTCCGAGAACTCACTTCGATTTTACTCATTGGGCTTCTTCTAGTGTTACGACTTTGCCTCCTGATGCAAAGGAATTATGTGAACTGAAATTTGAGCAAGGTTTTTGTTCACCGGACGAGAGGCTTCAACGACTAATCACAGATCAAAGACCGTTGGATTGGTCAGAATCCGATGCTTGGTGTTTTGTTCGGTCAAATTAA
Protein sequence

>MsaT025490.1

MKNWVRGKMLGSGTFATVNLATHPQNSDTFPSLTAVKTSDTYDSHFLVNEKQILDSLGSSPHIIKCFGQDQTFENGEECYNIFLEYAAGGTLSDQLKNHGGKLPENLVHRYTRSIVEGLKHIHNKGFVHCDLKLQNILVFEDGEGTPLYMSPEAVNESVYESPADIWALGCAVVEMATGKPAWNDPLKRWTAEMLLKHEFISCDETVSLVKELPLSMSPSPRTHFDFTHWASSSVTTLPPDAKELCELKFEQGFCSPDERLQRLITDQRPLDWSESDAWCFVRSN*