AlfalfaGEDB | MsaG025500

M. sativa ssp. caerulea / MsaG025500

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025500	XP_003611730.1	91.633	251	15	2	1	249	1	247	4.35e-136	393

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025500	sp\|Q9SND4\|HEC2_ARATH	55.046	218	67	7	14	222	4	199	7.14e-50	166

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025500	tr\|G7K6N1\|G7K6N1_MEDTR	91.633	251	15	2	1	249	1	247	2.08e-136	393

TFs/TRs:

Gene ID	Type	Classification
MsaG025500	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000647	MsaG025500	0.812433	7.307324e-51	1.324585e-48
MsaG001030	MsaG025500	0.801109	1.760855e-48	2.441097e-46
MsaG001252	MsaG025500	0.804307	3.881063e-49	5.790212e-47
MsaG001259	MsaG025500	0.800017	2.933306e-48	3.967624e-46
MsaG001835	MsaG025500	0.802060	1.126163e-48	1.595315e-46
MsaG002146	MsaG025500	0.840038	2.043993e-57	7.988878e-55
MsaG002681	MsaG025500	0.811350	1.254378e-50	2.213939e-48
MsaG002691	MsaG025500	0.834901	4.175384e-56	1.394462e-53
MsaG002692	MsaG025500	0.811012	1.483569e-50	2.596873e-48
MsaG002727	MsaG025500	0.800114	2.803449e-48	3.800147e-46
MsaG003418	MsaG025500	0.806190	1.571786e-49	2.450259e-47
MsaG003684	MsaG025500	0.817061	6.968726e-52	1.419819e-49
MsaG003810	MsaG025500	0.807396	8.766890e-50	1.406136e-47
MsaG004428	MsaG025500	0.807350	8.964271e-50	1.436241e-47
MsaG004430	MsaG025500	0.801118	1.753529e-48	2.431432e-46
MsaG004432	MsaG025500	0.803281	6.321788e-49	9.210089e-47
MsaG005004	MsaG025500	0.805720	1.971058e-49	3.038751e-47
MsaG005235	MsaG025500	0.814727	2.298439e-51	4.412482e-49
MsaG005278	MsaG025500	0.812787	6.118810e-51	1.118943e-48
MsaG005525	MsaG025500	0.800052	2.885348e-48	3.905793e-46
MsaG006633	MsaG025500	0.821563	6.642872e-53	1.522717e-50
MsaG006644	MsaG025500	0.809753	2.765518e-50	4.694694e-48
MsaG006759	MsaG025500	0.810632	1.792032e-50	3.107771e-48
MsaG006788	MsaG025500	0.814204	2.996837e-51	5.678348e-49
MsaG007117	MsaG025500	0.802496	9.167331e-49	1.311682e-46
MsaG007099	MsaG025500	0.811203	1.349888e-50	2.373896e-48
MsaG007291	MsaG025500	0.800268	2.608680e-48	3.548462e-46
MsaG008033	MsaG025500	0.813631	4.001481e-51	7.473676e-49
MsaG008603	MsaG025500	0.819740	1.734217e-52	3.787752e-50
MsaG008666	MsaG025500	0.800504	2.336887e-48	3.195768e-46
MsaG008888	MsaG025500	0.805324	2.384764e-49	3.642743e-47
MsaG008877	MsaG025500	0.802402	9.583101e-49	1.368254e-46
MsaG009057	MsaG025500	0.817760	4.857907e-52	1.007699e-49
MsaG009178	MsaG025500	0.826246	5.362161e-54	1.396196e-51
MsaG009234	MsaG025500	0.805531	2.159332e-49	3.314219e-47
MsaG009852	MsaG025500	0.810751	1.689255e-50	2.938030e-48
MsaG010268	MsaG025500	0.804456	3.613141e-49	5.409001e-47
MsaG010594	MsaG025500	0.807266	9.334459e-50	1.492547e-47
MsaG011213	MsaG025500	0.807111	1.006546e-49	1.603541e-47
MsaG011341	MsaG025500	0.810244	2.170402e-50	3.728600e-48
MsaG011525	MsaG025500	0.801083	1.782324e-48	2.469387e-46
MsaG011559	MsaG025500	0.822416	4.222097e-53	9.901524e-51
MsaG011764	MsaG025500	0.807811	7.163347e-50	1.160464e-47
MsaG011823	MsaG025500	0.800296	2.575506e-48	3.505491e-46
MsaG012130	MsaG025500	0.815207	1.800979e-51	3.499762e-49
MsaG012354	MsaG025500	0.801748	1.304204e-48	1.834478e-46
MsaG013189	MsaG025500	0.800692	2.140609e-48	2.939914e-46
MsaG013327	MsaG025500	0.805315	2.395187e-49	3.657888e-47
MsaG013429	MsaG025500	0.825760	6.989514e-54	1.795475e-51
MsaG013438	MsaG025500	0.804147	4.187760e-49	6.224679e-47
MsaG013804	MsaG025500	0.806529	1.334458e-49	2.097030e-47
MsaG013846	MsaG025500	0.816795	7.993261e-52	1.617342e-49
MsaG013883	MsaG025500	0.807223	9.535326e-50	1.523078e-47
MsaG014062	MsaG025500	0.818850	2.759835e-52	5.888852e-50
MsaG014145	MsaG025500	0.813148	5.103659e-51	9.417586e-49
MsaG015195	MsaG025500	0.811192	1.357151e-50	2.386040e-48
MsaG015841	MsaG025500	0.814394	2.721842e-51	5.181920e-49
MsaG015930	MsaG025500	0.808421	5.317912e-50	8.742234e-48
MsaG016591	MsaG025500	0.801617	1.387651e-48	1.946002e-46
MsaG016721	MsaG025500	0.800481	2.362458e-48	3.229063e-46
MsaG017192	MsaG025500	0.805248	2.473809e-49	3.772052e-47
MsaG017271	MsaG025500	0.809478	3.166392e-50	5.339881e-48
MsaG018150	MsaG025500	0.810224	2.192309e-50	3.764305e-48
MsaG018256	MsaG025500	0.816222	1.072216e-51	2.137974e-49
MsaG018355	MsaG025500	0.806326	1.472213e-49	2.302437e-47
MsaG018406	MsaG025500	0.800257	2.622229e-48	3.566018e-46
MsaG018431	MsaG025500	0.803181	6.629811e-49	9.636545e-47
MsaG018613	MsaG025500	0.805207	2.522447e-49	3.842644e-47
MsaG019089	MsaG025500	0.801268	1.634356e-48	2.273866e-46
MsaG019134	MsaG025500	0.805820	1.879027e-49	2.903648e-47
MsaG019479	MsaG025500	0.808340	5.532630e-50	9.077477e-48
MsaG020648	MsaG025500	0.802651	8.521375e-49	1.223584e-46
MsaG020650	MsaG025500	0.800909	1.933434e-48	2.668280e-46
MsaG020697	MsaG025500	0.802325	9.938392e-49	1.416475e-46
MsaG021293	MsaG025500	0.809968	2.488279e-50	4.245891e-48
MsaG021781	MsaG025500	0.817607	5.257745e-52	1.086352e-49
MsaG021783	MsaG025500	0.819458	2.009713e-52	4.357316e-50
MsaG021835	MsaG025500	0.803729	5.111352e-49	7.524160e-47
MsaG021836	MsaG025500	0.817242	6.349857e-52	1.299770e-49
MsaG021799	MsaG025500	0.817048	7.016902e-52	1.429156e-49
MsaG022048	MsaG025500	0.813046	5.373845e-51	9.890976e-49
MsaG022609	MsaG025500	0.851451	1.681559e-60	9.581743e-58
MsaG022706	MsaG025500	0.811229	1.332041e-50	2.344071e-48
MsaG022748	MsaG025500	0.809035	3.937730e-50	6.569787e-48
MsaG023230	MsaG025500	0.827966	2.087905e-54	5.704235e-52
MsaG024313	MsaG025500	0.809912	2.556968e-50	4.357361e-48
MsaG024535	MsaG025500	0.817546	5.426760e-52	1.119524e-49
MsaG024752	MsaG025500	0.804182	4.118200e-49	6.126189e-47
MsaG025331	MsaG025500	0.822516	4.004674e-53	9.416677e-51
MsaG025367	MsaG025500	0.804591	3.387796e-49	5.087483e-47
MsaG025500	MsaG025584	0.805004	2.780242e-49	4.215475e-47
MsaG025500	MsaG025685	0.800017	2.933316e-48	3.967624e-46
MsaG025500	MsaG025976	0.802206	1.051167e-48	1.494043e-46
MsaG025500	MsaG026465	0.814421	2.685023e-51	5.115287e-49
MsaG025500	MsaG026901	0.803075	6.973464e-49	1.011110e-46
MsaG025500	MsaG027293	0.806265	1.515667e-49	2.367059e-47
MsaG025500	MsaG027690	0.801218	1.673123e-48	2.325147e-46
MsaG025500	MsaG027759	0.810980	1.507605e-50	2.636859e-48
MsaG025500	MsaG028072	0.811460	1.187742e-50	2.101989e-48
MsaG025500	MsaG028254	0.801269	1.633292e-48	2.272452e-46
MsaG025500	MsaG028303	0.812018	8.991830e-51	1.613261e-48
MsaG025500	MsaG028306	0.826194	5.518673e-54	1.434870e-51
MsaG025500	MsaG028417	0.824786	1.184458e-53	2.962124e-51
MsaG025500	MsaG028603	0.809981	2.471849e-50	4.219229e-48
MsaG025500	MsaG028771	0.802879	7.648992e-49	1.104052e-46
MsaG025500	MsaG029024	0.806053	1.679490e-49	2.609598e-47
MsaG025500	MsaG029083	0.809373	3.335065e-50	5.609676e-48
MsaG025500	MsaG029210	0.805915	1.794737e-49	2.779611e-47
MsaG025500	MsaG029311	0.828572	1.493849e-54	4.151291e-52
MsaG025500	MsaG029894	0.838582	4.857183e-57	1.813895e-54
MsaG025500	MsaG030265	0.827912	2.151252e-54	5.868423e-52
MsaG025500	MsaG030445	0.814274	2.891600e-51	5.488558e-49
MsaG025500	MsaG030462	0.817931	4.446827e-52	9.265251e-50
MsaG025500	MsaG031017	0.806425	1.403264e-49	2.199801e-47
MsaG025500	MsaG031414	0.802773	8.042054e-49	1.157964e-46
MsaG025500	MsaG032177	0.811485	1.173194e-50	2.077507e-48
MsaG025500	MsaG032340	0.807402	8.739855e-50	1.402022e-47
MsaG025500	MsaG032765	0.805075	2.686794e-49	4.080472e-47
MsaG025500	MsaG032860	0.817071	6.933850e-52	1.413062e-49
MsaG025500	MsaG033186	0.807716	7.503118e-50	1.212726e-47
MsaG025500	MsaG033851	0.802956	7.374973e-49	1.066396e-46
MsaG025500	MsaG034145	0.818430	3.433490e-52	7.246419e-50
MsaG025500	MsaG034554	0.809431	3.241442e-50	5.460050e-48
MsaG025500	MsaG034661	0.800805	2.030099e-48	2.795213e-46
MsaG025500	MsaG035173	0.810801	1.647460e-50	2.868930e-48
MsaG025500	MsaG035333	0.806097	1.643659e-49	2.556651e-47
MsaG025500	MsaG035731	0.824802	1.174276e-53	2.937960e-51
MsaG025500	MsaG036061	0.803140	6.761043e-49	9.817792e-47
MsaG025500	MsaG036246	0.802844	7.779152e-49	1.121895e-46
MsaG025500	MsaG036503	0.816754	8.161493e-52	1.649717e-49
MsaG025500	MsaG037106	0.801130	1.743708e-48	2.418483e-46
MsaG025500	MsaG037367	0.808313	5.607825e-50	9.194754e-48
MsaG025500	MsaG037736	0.815217	1.791847e-51	3.482882e-49
MsaG025500	MsaG037774	0.802975	7.309849e-49	1.057442e-46
MsaG025500	MsaG038166	0.819774	1.703921e-52	3.724935e-50
MsaG025500	MsaG038110	0.803677	5.239062e-49	7.702816e-47
MsaG025500	MsaG038548	0.803898	4.716491e-49	6.969903e-47
MsaG025500	MsaG038991	0.811207	1.347138e-50	2.369304e-48
MsaG025500	MsaG038999	0.804702	3.212348e-49	4.836478e-47
MsaG025500	MsaG039182	0.819600	1.866351e-52	4.061319e-50
MsaG025500	MsaG039448	0.803059	7.026244e-49	1.018378e-46
MsaG025500	MsaG039649	0.809229	3.579135e-50	5.999165e-48
MsaG025500	MsaG039824	0.814425	2.679168e-51	5.104650e-49
MsaG025500	MsaG040019	0.814588	2.466244e-51	4.718025e-49
MsaG025500	MsaG040266	0.809639	2.925844e-50	4.953142e-48
MsaG025500	MsaG040545	0.811209	1.345883e-50	2.367217e-48
MsaG025500	MsaG040950	0.800797	2.037847e-48	2.805386e-46
MsaG025500	MsaG041066	0.808186	5.966418e-50	9.752970e-48
MsaG025500	MsaG041135	0.832137	2.028599e-55	6.245126e-53
MsaG025500	MsaG041557	0.804783	3.090167e-49	4.661374e-47
MsaG025500	MsaG041486	0.802835	7.810468e-49	1.126198e-46
MsaG025500	MsaG041495	0.809377	3.328242e-50	5.598758e-48
MsaG025500	MsaG041510	0.807827	7.106033e-50	1.151630e-47
MsaG025500	MsaG041801	0.808980	4.044587e-50	6.739206e-48
MsaG025500	MsaG041937	0.801311	1.601618e-48	2.230533e-46
MsaG025500	MsaG042050	0.809730	2.798044e-50	4.747166e-48
MsaG025500	MsaG042162	0.804379	3.749670e-49	5.603461e-47
MsaG025500	MsaG042571	0.810375	2.035131e-50	3.507374e-48
MsaG025500	MsaG042575	0.812387	7.475578e-51	1.353550e-48
MsaG025500	MsaG042799	0.827338	2.950221e-54	7.919296e-52
MsaG025500	MsaG043347	0.800897	1.944256e-48	2.682503e-46
MsaG025500	MsaG043499	0.801784	1.282465e-48	1.805337e-46
MsaG025500	MsaG043634	0.803626	5.367947e-49	7.882772e-47
MsaG025500	MsaG043935	0.802342	9.860759e-49	1.405949e-46
MsaG025500	MsaG044189	0.826335	5.110295e-54	1.333886e-51
MsaG025500	MsaG044369	0.804793	3.076396e-49	4.641597e-47
MsaG025500	MsaG044532	0.814969	2.032950e-51	3.926838e-49
MsaG025500	MsaG044566	0.800788	2.046819e-48	2.817160e-46
MsaG025500	MsaG044545	0.800644	2.188678e-48	3.002681e-46
MsaG025500	MsaG044874	0.819497	1.969747e-52	4.274932e-50
MsaG025500	MsaG044946	0.802605	8.708521e-49	1.249156e-46
MsaG025500	MsaG045037	0.803857	4.808345e-49	7.099039e-47
MsaG025500	MsaG045314	0.816396	9.808402e-52	1.964425e-49
MsaG025500	MsaG045517	0.804895	2.929542e-49	4.430559e-47
MsaG025500	MsaG046598	0.808763	4.498381e-50	7.456310e-48
MsaG025500	MsaG047151	0.816662	8.554992e-52	1.725085e-49
MsaG025500	MsaG003317	0.807236	9.473945e-50	1.513748e-47
MsaG025500	MsaG002355	0.802077	1.117288e-48	1.583346e-46
MsaG025500	MsaG003294	0.812768	6.178186e-51	1.129245e-48
MsaG025500	MsaG008314	0.802061	1.125977e-48	1.595072e-46
MsaG025500	MsaG008728	0.814626	2.419746e-51	4.633554e-49
MsaG025500	MsaG009150	0.816378	9.897075e-52	1.981326e-49
MsaG025500	MsaG013105	0.806435	1.396241e-49	2.189348e-47
MsaG025500	MsaG013930	0.807825	7.115054e-50	1.153022e-47
MsaG025500	MsaG012254	0.851526	1.602627e-60	9.155164e-58
MsaG025500	MsaG014339	0.808396	5.382852e-50	8.843578e-48
MsaG025500	MsaG013316	0.802120	1.094640e-48	1.552748e-46
MsaG025500	MsaG013067	0.800931	1.914315e-48	2.643174e-46
MsaG025500	MsaG012992	0.810693	1.737975e-50	3.018502e-48
MsaG025500	MsaG022818	0.809577	3.016387e-50	5.099006e-48
MsaG025500	MsaG020741	0.815397	1.634459e-51	3.191495e-49
MsaG025500	MsaG018949	0.844419	1.431331e-58	6.434260e-56
MsaG025500	MsaG023170	0.813165	5.059788e-51	9.340678e-49
MsaG025500	MsaG019768	0.829352	9.689067e-55	2.752434e-52
MsaG025500	MsaG019154	0.824318	1.524945e-53	3.765451e-51
MsaG025500	MsaG018951	0.807749	7.380777e-50	1.193912e-47
MsaG025500	MsaG020214	0.824266	1.568535e-53	3.867361e-51
MsaG025500	MsaG024064	0.818226	3.816656e-52	8.012971e-50
MsaG025500	MsaG026612	0.803070	6.987244e-49	1.013009e-46
MsaG025500	MsaG028769	0.800738	2.095235e-48	2.880516e-46
MsaG025500	MsaG027632	0.800218	2.670202e-48	3.628011e-46
MsaG025500	MsaG030695	0.806058	1.675073e-49	2.603092e-47
MsaG025500	MsaG030749	0.806657	1.254036e-49	1.976595e-47
MsaG025500	MsaG042682	0.833972	7.124626e-56	2.314238e-53
MsaG025500	MsaG042495	0.802922	7.497276e-49	1.083214e-46
MsaG025500	MsaG044505	0.833359	1.012291e-55	3.229389e-53

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025500	MtrunA17_Chr5g0402161	91.633	251	15	2	1	249	1	247	4.00e-140	393
MsaG025500	MtrunA17_Chr8g0375121	57.519	266	80	10	1	249	1	250	1.58e-65	204
MsaG025500	MtrunA17_Chr3g0134001	54.545	209	76	7	25	214	40	248	1.58e-58	186
MsaG025500	MtrunA17_Chr8g0384141	75.824	91	22	0	112	202	87	177	7.74e-47	156
MsaG025500	MtrunA17_Chr2g0330641	56.923	130	48	3	83	205	228	356	2.66e-31	119
MsaG025500	MtrunA17_Chr8g0341421	63.636	99	32	1	111	205	296	394	3.26e-29	114
MsaG025500	MtrunA17_Chr7g0243041	68.966	58	18	0	145	202	32	89	3.52e-23	92.0
MsaG025500	MtrunA17_Chr5g0435021	55.696	79	33	1	125	201	202	280	1.74e-20	88.6
MsaG025500	MtrunA17_Chr1g0207301	53.731	67	31	0	135	201	284	350	1.65e-17	80.9
MsaG025500	MtrunA17_Chr1g0152651	62.963	54	20	0	148	201	283	336	3.06e-17	80.1
MsaG025500	MtrunA17_Chr5g0393721	62.963	54	20	0	148	201	233	286	4.62e-17	79.3
MsaG025500	MtrunA17_Chr1g0207311	51.948	77	32	2	130	201	182	258	7.28e-17	78.2
MsaG025500	MtrunA17_Chr3g0134741	55.556	63	28	0	139	201	229	291	2.64e-16	77.0
MsaG025500	MtrunA17_Chr4g0074161	54.286	70	27	1	146	210	213	282	8.19e-15	73.2
MsaG025500	MtrunA17_Chr1g0190731	51.429	70	34	0	132	201	186	255	8.60e-15	72.8
MsaG025500	MtrunA17_Chr1g0179061	42.169	83	42	1	139	215	170	252	3.32e-13	67.4
MsaG025500	MtrunA17_Chr2g0311101	46.667	75	33	1	135	202	158	232	7.65e-13	67.0
MsaG025500	MtrunA17_Chr4g0014771	50.769	65	31	1	140	203	119	183	4.40e-12	63.2
MsaG025500	MtrunA17_Chr3g0095391	39.437	71	43	0	150	220	320	390	6.66e-11	61.6
MsaG025500	MtrunA17_Chr2g0323091	48.148	54	28	0	149	202	146	199	6.66e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025500	AT3G50330.1	55.046	218	67	7	14	222	4	199	7.26e-51	166
MsaG025500	AT5G67060.1	57.292	192	68	4	17	203	4	186	1.30e-50	166
MsaG025500	AT5G67060.2	56.831	183	66	3	25	203	1	174	1.71e-47	157
MsaG025500	AT4G00120.1	67.708	96	28	1	114	206	87	182	1.21e-39	136
MsaG025500	AT3G21330.1	65.957	94	32	0	111	204	241	334	6.17e-38	136
MsaG025500	AT5G09750.1	76.667	90	21	0	112	201	92	181	2.31e-35	126
MsaG025500	AT5G01305.1	69.492	59	18	0	140	198	38	96	7.97e-22	89.4
MsaG025500	AT5G43175.1	50.725	69	34	0	133	201	126	194	8.25e-19	82.4
MsaG025500	AT4G33880.1	59.677	62	25	0	140	201	267	328	1.65e-18	84.0
MsaG025500	AT5G37800.1	56.164	73	25	1	136	201	191	263	4.20e-18	82.0
MsaG025500	AT1G27740.1	51.471	68	33	0	134	201	162	229	5.91e-18	80.9
MsaG025500	AT1G66470.1	67.273	55	18	0	147	201	203	257	6.43e-18	81.6
MsaG025500	AT2G14760.1	58.065	62	26	0	140	201	238	299	1.79e-17	80.5
MsaG025500	AT4G30980.1	43.434	99	55	1	103	201	95	192	1.01e-16	78.2
MsaG025500	AT2G24260.2	52.703	74	29	1	134	201	24	97	1.43e-16	77.0
MsaG025500	AT4G30980.2	43.434	99	55	1	103	201	143	240	2.52e-16	77.8
MsaG025500	AT2G24260.1	52.703	74	29	1	134	201	127	200	3.64e-16	77.0
MsaG025500	AT5G58010.1	54.545	66	30	0	136	201	96	161	9.32e-15	72.8
MsaG025500	AT2G14760.3	48.000	75	26	1	140	201	238	312	3.91e-14	71.2

Find 57 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTGGTGGTTTAATGGTTTC+TGG	0.032783	5:-9012122	None:intergenic
CTTTCTCTTTGGTGGTTTAA+TGG	0.129321	5:-9012129	None:intergenic
ACAAACAATGATTTCCCTTA+TGG	0.235794	5:+9011873	MsaT025500.1:CDS
ATCTTCACATTCTTTCTCTT+TGG	0.246196	5:-9012140	None:intergenic
AATTATTCTTCTTTGCTTAG+AGG	0.274535	5:+9012401	MsaT025500.1:CDS
AAAGAATTAGTGAAAGAATA+AGG	0.285456	5:+9012204	MsaT025500.1:CDS
GAGATTGAGAGTGTTGTTAT+TGG	0.293893	5:-9011844	None:intergenic
TTATTGGTATTGCTATAAAA+AGG	0.306430	5:-9011828	None:intergenic
TTGGTGGTTTAATGGTTTCT+GGG	0.314323	5:-9012121	None:intergenic
TGTCTTGCTGCTACACTTTG+TGG	0.337683	5:-9012173	None:intergenic
TTCACATTCTTTCTCTTTGG+TGG	0.352271	5:-9012137	None:intergenic
TGAAGCGACGGCGGTGTCAT+TGG	0.364263	5:-9011966	None:intergenic
TTCAAACGTTGGAACAAGTT+GGG	0.370508	5:+9012321	MsaT025500.1:CDS
TTGAATGTTGTTGGGTTTCA+AGG	0.375435	5:+9012356	MsaT025500.1:CDS
GTTTCTGGGTCTATGTTAAT+CGG	0.384832	5:-9012107	None:intergenic
TGATGGGATTTGAACTCTGT+TGG	0.387374	5:-9011991	None:intergenic
GCCATTGAATTCTTCTTCTC+CGG	0.399282	5:-9012044	None:intergenic
ACTAAGCATTTGTTTGGAAG+TGG	0.402015	5:-9012453	None:intergenic
AATAGACCTTTGAATGTTGT+TGG	0.403761	5:+9012347	MsaT025500.1:CDS
CATTTCTTCATTCTCCTATC+CGG	0.405852	5:+9012025	MsaT025500.1:CDS
GTTACATTTGAGTTTCCATA+AGG	0.409196	5:-9011888	None:intergenic
TGAGGACATACTGAAAACTT+TGG	0.409321	5:+9011734	MsaT025500.1:CDS
TGGAAGTGGGACCCACCATT+TGG	0.414540	5:-9012439	None:intergenic
GATGGGATTTGAACTCTGTT+GGG	0.418955	5:-9011990	None:intergenic
GTGTCAACTAAGCATTTGTT+TGG	0.421668	5:-9012459	None:intergenic
TTCATCACCTTGCCAAATGG+TGG	0.447650	5:+9012427	MsaT025500.1:CDS
GAGGACATACTGAAAACTTT+GGG	0.447841	5:+9011735	MsaT025500.1:CDS
ATAGACCTTTGAATGTTGTT+GGG	0.458742	5:+9012348	MsaT025500.1:CDS
TTACATTTGAGTTTCCATAA+GGG	0.484501	5:-9011887	None:intergenic
GTTCAAACGTTGGAACAAGT+TGG	0.486495	5:+9012320	MsaT025500.1:CDS
GATGACAATGATGATGCAAA+TGG	0.498844	5:+9011782	MsaT025500.1:CDS
TGAATTCTTCTTCTCCGGAT+AGG	0.501360	5:-9012039	None:intergenic
AAATGTTGGTTCTTCCTGAT+GGG	0.503530	5:-9012007	None:intergenic
TTGTTCATCACCTTGCCAAA+TGG	0.505893	5:+9012424	MsaT025500.1:CDS
AACAGAGTTCAAATCCCATC+AGG	0.513806	5:+9011993	MsaT025500.1:CDS
TGTTGTTGGGTTTCAAGGAG+TGG	0.515205	5:+9012361	MsaT025500.1:CDS
GAAATGTTGGTTCTTCCTGA+TGG	0.537381	5:-9012008	None:intergenic
TCTGAAAACATTCATGGATG+AGG	0.543834	5:+9011716	None:intergenic
CTAAGCATTTGTTTGGAAGT+GGG	0.548242	5:-9012452	None:intergenic
GGTGTCATTGGTTGTTGAAG+AGG	0.548657	5:-9011954	None:intergenic
ATAGGAGAATGAAGAAATGT+TGG	0.554824	5:-9012021	None:intergenic
GAAGAAACAAGTTCAAACGT+TGG	0.554879	5:+9012310	MsaT025500.1:CDS
TCATCACCTTGCCAAATGGT+GGG	0.555921	5:+9012428	MsaT025500.1:CDS
TGAAACCCAACAACATTCAA+AGG	0.560330	5:-9012353	None:intergenic
TCAAACGTTGGAACAAGTTG+GGG	0.569007	5:+9012322	MsaT025500.1:CDS
ACTCTGTTGGGTTGAAGCGA+CGG	0.575367	5:-9011978	None:intergenic
AAAGAATGTGAAGATTTCAA+AGG	0.590303	5:+9012148	MsaT025500.1:CDS
TGAAGAGGATAAGACAATGG+TGG	0.592428	5:-9011939	None:intergenic
TCCGGAGAAGAAGAATTCAA+TGG	0.605617	5:+9012043	MsaT025500.1:CDS
AGAGATGATATTTCGTATAG+CGG	0.621555	5:+9012076	MsaT025500.1:CDS
AATGGTGGATTGATCAATGA+AGG	0.629442	5:-9011924	None:intergenic
GGGAAATGTTGAAAGTAACA+TGG	0.631569	5:+9011755	MsaT025500.1:CDS
GTGGGACCCACCATTTGGCA+AGG	0.634945	5:-9012434	None:intergenic
CTGTTGGGTTGAAGCGACGG+CGG	0.671897	5:-9011975	None:intergenic
ATATTACAAAGATTAGTACC+TGG	0.683168	5:+9012227	MsaT025500.1:CDS
TTACAAAGATTAGTACCTGG+TGG	0.689802	5:+9012230	MsaT025500.1:CDS
TGTTGAAGAGGATAAGACAA+TGG	0.700529	5:-9011942	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	9011729	9012478	9011729	ID=MsaG025500
Chr5	mRNA	9011729	9012478	9011729	ID=MsaT025500.1;Parent=MsaG025500
Chr5	exon	9011729	9012478	9011729	ID=MsaT025500.1.exon1;Parent=MsaT025500.1
Chr5	CDS	9011729	9012478	9011729	ID=cds.MsaT025500.1;Parent=MsaT025500.1

Gene Sequence

>MsaT025500.1

ATGGATGAGGACATACTGAAAACTTTGGGAAATGTTGAAAGTAACATGGACATGATGACAATGATGATGCAAATGGAAAAGTTCCCTGATTCATATGAACCTTTTTATAGCAATACCAATAACAACACTCTCAATCTCAATCTCACAAACAATGATTTCCCTTATGGAAACTCAAATGTAACTTCATCACTCACACCTTCATTGATCAATCCACCATTGTCTTATCCTCTTCAACAACCAATGACACCGCCGTCGCTTCAACCCAACAGAGTTCAAATCCCATCAGGAAGAACCAACATTTCTTCATTCTCCTATCCGGAGAAGAAGAATTCAATGGCAGCAATGAGAGAGATGATATTTCGTATAGCGGTTATGCAACCGATTAACATAGACCCAGAAACCATTAAACCACCAAAGAGAAAGAATGTGAAGATTTCAAAGGATCCACAAAGTGTAGCAGCAAGACATAGAAGAGAAAGAATTAGTGAAAGAATAAGGATATTACAAAGATTAGTACCTGGTGGAACAAAAATGGACACTGCTTCTATGTTAGATGAAGCAATACATTATGTGAAGTTTTTGAAGAAACAAGTTCAAACGTTGGAACAAGTTGGGGCAAATAGACCTTTGAATGTTGTTGGGTTTCAAGGAGTGGTTTCTAATGCTAATTTTAATTATTCTTCTTTGCTTAGAGGTTGTTCATCACCTTGCCAAATGGTGGGTCCCACTTCCAAACAAATGCTTAGTTGA

Protein sequence

>MsaT025500.1

MDEDILKTLGNVESNMDMMTMMMQMEKFPDSYEPFYSNTNNNTLNLNLTNNDFPYGNSNVTSSLTPSLINPPLSYPLQQPMTPPSLQPNRVQIPSGRTNISSFSYPEKKNSMAAMREMIFRIAVMQPINIDPETIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGANRPLNVVGFQGVVSNANFNYSSLLRGCSSPCQMVGPTSKQMLS*