AlfalfaGEDB | MsaG025513

M. sativa ssp. caerulea / MsaG025513

KEGG: -
GO: -
PFAM: PF13837.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025513	XP_003611755.1	81.890	254	21	2	1	254	1	229	1.62e-142	409

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025513	tr\|G7K6Q6\|G7K6Q6_MEDTR	81.890	254	21	2	1	254	1	229	7.73e-143	409

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TFs/TRs:

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Gene ID	Type	Classification
MsaG025513	TF	Trihelix

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025513	MtrunA17_Chr5g0402321	81.890	254	21	2	1	254	1	229	1.49e-146	409
MsaG025513	MtrunA17_Chr4g0066271	45.872	109	57	1	14	122	109	215	9.51e-27	107
MsaG025513	MtrunA17_Chr7g0250201	49.020	102	49	2	19	118	43	143	6.58e-22	93.6
MsaG025513	MtrunA17_Chr1g0179531	31.111	135	74	4	22	143	133	261	7.44e-16	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025513	AT3G24860.1	34.082	267	141	5	11	253	54	309	8.26e-44	150
MsaG025513	AT2G44730.1	44.348	115	54	2	9	119	51	159	1.14e-22	95.9
MsaG025513	AT3G10030.1	36.634	101	58	2	22	122	161	255	3.21e-15	75.1
MsaG025513	AT3G10030.2	36.634	101	58	2	22	122	161	255	3.55e-15	75.1
MsaG025513	AT3G54390.1	28.151	238	134	7	22	238	38	259	4.12e-15	73.9
MsaG025513	AT3G54390.2	28.151	238	134	7	22	238	54	275	5.25e-15	73.6
MsaG025513	AT3G58630.2	31.624	117	67	2	22	128	26	139	3.95e-14	71.2
MsaG025513	AT3G58630.1	31.624	117	67	2	22	128	26	139	4.82e-14	70.9

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Find 81 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGTATTCACTCAAACG+GGG	0.751020	5:+9328028	MsaT025513.1:CDS
AACTGATGATGAAGAGGAGG+AGG	0.476758	5:+9328447	MsaT025513.1:CDS
AAGAGTGAGTTCTGGTGAAG+CGG	0.610541	5:-9327927	None:intergenic
AATGGGTTGAGGTTTCTTTG+TGG	0.544865	5:-9327957	None:intergenic
ACAGTGCTGCTAGGTCTGTT+AGG	0.436809	5:+9328353	MsaT025513.1:CDS
ACGACATTGAAGAGCGGTTT+TGG	0.311108	5:-9328128	None:intergenic
AGAAACCTCAACCCATTCCA+TGG	0.546082	5:+9327963	MsaT025513.1:CDS
AGAAATGGTATTCACTCAAA+CGG	0.486979	5:+9328026	MsaT025513.1:CDS
AGAAGCGGCGGAGGAAGTAG+CGG	0.578291	5:-9328203	None:intergenic
AGACGAAGAGGAGGGAGTGA+TGG	0.530323	5:+9328474	MsaT025513.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	9327920	9328684	9327920	ID=MsaG025513
Chr5	mRNA	9327920	9328684	9327920	ID=MsaT025513.1;Parent=MsaG025513
Chr5	exon	9327920	9328684	9327920	ID=MsaT025513.1.exon1;Parent=MsaT025513.1
Chr5	CDS	9327920	9328684	9327920	ID=cds.MsaT025513.1;Parent=MsaT025513.1

Gene Sequence

>MsaT025513.1

ATGGCCACCGCTTCACCAGAACTCACTCTTTCCCTTCCCACAAAGAAACCTCAACCCATTCCATGGACCCACCAAGAAACCATTAACCTCATCAGAGCCTACCAAGAGAAATGGTATTCACTCAAACGGGGCCCACTCCGCGGCAGTCAATGGGAAGAAGTGGCTGTAGTCGTAGCCGCTCGTTGCGGCTACGATTACAACCACCCTTCCAAAACCGCTCTTCAATGTCGTCATAAGATGGAAAAACTCCGTCAACGCCACCGATCTGAAAAACACCGCCTCACCGCTACTTCCTCCGCCGCTTCTTCTCGATCCTGGCAGTATTTTCGTCTCATGGATGATCTTGAACGCGGTCCTTTACCTATCTCCGTCAGACCTCTTTCTCAGAAGCATCCTATCTCCGACGATAGCGACGGTGAGAGGGTGAAAAAGCACAGTGCTGCTAGGTCTGTTAGGTCAAGGAGTATTCATACTGTTCTTAACCAGAAACCAACAGTAACAAGACAACAACAACAACAACGTGATGAAACTGATGATGAAGAGGAGGAGGAGGAAGACGAAGAGGAGGGAGTGATGGCGAAGAGTTTGACAGCGGAGTTGAGAAGCTTTGCAGAGAGGATTGTAGGTTTGGAAAATAAGAAGATGGAGATGATGAAGGAAACAGAGAGGTTTAGATTAGAGATGGAGAATAAGAGGATTCGTATGATACTTGAATCTCAATGGAGGATTGTTGATTCTATTGGAAAGGCATTTGGGTCTTCTTAG

Protein sequence

>MsaT025513.1

MATASPELTLSLPTKKPQPIPWTHQETINLIRAYQEKWYSLKRGPLRGSQWEEVAVVVAARCGYDYNHPSKTALQCRHKMEKLRQRHRSEKHRLTATSSAASSRSWQYFRLMDDLERGPLPISVRPLSQKHPISDDSDGERVKKHSAARSVRSRSIHTVLNQKPTVTRQQQQQRDETDDEEEEEEDEEEGVMAKSLTAELRSFAERIVGLENKKMEMMKETERFRLEMENKRIRMILESQWRIVDSIGKAFGSS*