AlfalfaGEDB | MsaG025544

M. sativa ssp. caerulea / MsaG025544

KEGG: K14498
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025544	XP_013453509.1	99.155	355	3	0	1	355	1	355	0.0	731

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025544	sp\|Q39193\|SRK2I_ARATH	81.766	351	62	2	7	355	11	361	0.0	582

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025544	tr\|A0A072UDL3\|A0A072UDL3_MEDTR	99.155	355	3	0	1	355	1	355	0.0	731

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025544	MtrunA17_Chr5g0402661	99.155	355	3	0	1	355	1	355	0.0	731
MsaG025544	MtrunA17_Chr8g0374571	84.874	357	52	2	1	355	6	362	0.0	631
MsaG025544	MtrunA17_Chr4g0045371	79.944	354	68	3	5	355	10	363	0.0	591
MsaG025544	MtrunA17_Chr1g0162301	79.037	353	70	2	7	355	13	365	0.0	578
MsaG025544	MtrunA17_Chr4g0055451	68.358	335	102	2	16	350	3	333	1.39e-177	496
MsaG025544	MtrunA17_Chr2g0277501	70.625	320	92	2	16	333	2	321	1.99e-169	476
MsaG025544	MtrunA17_Chr5g0426521	67.359	337	107	2	16	352	2	335	2.55e-169	475
MsaG025544	MtrunA17_Chr8g0381821	71.061	311	88	2	16	325	2	311	2.32e-167	470
MsaG025544	MtrunA17_Chr3g0131061	72.425	301	82	1	16	315	2	302	2.45e-167	471
MsaG025544	MtrunA17_Chr8g0385281	71.429	301	85	1	16	315	3	303	1.41e-166	469

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025544	AT5G66880.1	81.766	351	62	2	7	355	11	361	0.0	582
MsaG025544	AT5G66880.2	81.766	351	62	2	7	355	11	361	0.0	582
MsaG025544	AT3G50500.1	79.202	351	71	2	7	355	12	362	0.0	566
MsaG025544	AT4G33950.1	79.320	353	69	3	7	355	10	362	0.0	566
MsaG025544	AT4G33950.2	80.734	327	62	1	7	332	10	336	0.0	561
MsaG025544	AT3G50500.2	76.860	363	75	3	2	355	7	369	0.0	560
MsaG025544	AT5G63650.1	72.131	305	84	1	16	319	2	306	1.76e-167	471
MsaG025544	AT1G10940.1	70.764	301	87	1	16	315	2	302	2.82e-166	468
MsaG025544	AT5G08590.1	71.096	301	87	0	16	316	2	302	1.10e-165	466
MsaG025544	AT1G60940.1	70.861	302	87	1	16	316	2	303	5.15e-165	465

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Find 84 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGAAATTACCTCTGC+AGG	0.384298	5:-9757306	None:intergenic
AAAGTCAACTGTGGGAACTC+CGG	0.576196	5:+9756707	MsaT025544.1:CDS
AAATAGAAATTACCTCTGCA+GGG	0.556900	5:-9757305	None:intergenic
AACCTTATACGTGATGCTAG+TGG	0.584307	5:+9757051	MsaT025544.1:CDS
AACTTGATGTAGATAGCAGT+GGG	0.529690	5:+9758374	MsaT025544.1:CDS
AAGCTACCGTACCAGCAGCT+GGG	0.608355	5:+9758281	MsaT025544.1:CDS
ACCTTATACGTGATGCTAGT+GGG	0.553387	5:+9757052	MsaT025544.1:CDS
ACTTCTGGGGCAATATAAGC+CGG	0.591957	5:-9756726	None:intergenic
ACTTGATGTAGATAGCAGTG+GGG	0.802844	5:+9758375	MsaT025544.1:CDS
AGAGAGAAATAATCAATCAC+AGG	0.567835	5:+9755499	MsaT025544.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	9754522	9758417	9754522	ID=MsaG025544
Chr5	mRNA	9754522	9758417	9754522	ID=MsaT025544.1;Parent=MsaG025544
Chr5	exon	9754522	9754683	9754522	ID=MsaT025544.1.exon1;Parent=MsaT025544.1
Chr5	CDS	9754522	9754683	9754522	ID=cds.MsaT025544.1;Parent=MsaT025544.1
Chr5	exon	9755483	9755557	9755483	ID=MsaT025544.1.exon2;Parent=MsaT025544.1
Chr5	CDS	9755483	9755557	9755483	ID=cds.MsaT025544.1;Parent=MsaT025544.1
Chr5	exon	9755645	9755746	9755645	ID=MsaT025544.1.exon3;Parent=MsaT025544.1
Chr5	CDS	9755645	9755746	9755645	ID=cds.MsaT025544.1;Parent=MsaT025544.1
Chr5	exon	9755848	9755901	9755848	ID=MsaT025544.1.exon4;Parent=MsaT025544.1
Chr5	CDS	9755848	9755901	9755848	ID=cds.MsaT025544.1;Parent=MsaT025544.1
Chr5	exon	9756052	9756144	9756052	ID=MsaT025544.1.exon5;Parent=MsaT025544.1
Chr5	CDS	9756052	9756144	9756052	ID=cds.MsaT025544.1;Parent=MsaT025544.1
Chr5	exon	9756684	9756776	9756684	ID=MsaT025544.1.exon6;Parent=MsaT025544.1
Chr5	CDS	9756684	9756776	9756684	ID=cds.MsaT025544.1;Parent=MsaT025544.1
Chr5	exon	9757025	9757129	9757025	ID=MsaT025544.1.exon7;Parent=MsaT025544.1
Chr5	CDS	9757025	9757129	9757025	ID=cds.MsaT025544.1;Parent=MsaT025544.1
Chr5	exon	9757216	9757314	9757216	ID=MsaT025544.1.exon8;Parent=MsaT025544.1
Chr5	CDS	9757216	9757314	9757216	ID=cds.MsaT025544.1;Parent=MsaT025544.1
Chr5	exon	9758133	9758417	9758133	ID=MsaT025544.1.exon9;Parent=MsaT025544.1
Chr5	CDS	9758133	9758417	9758133	ID=cds.MsaT025544.1;Parent=MsaT025544.1

Gene Sequence

>MsaT025544.1

ATGAATCCTCCTCCAACCATGGATATGCCGATCATGCACGACAGCGACCGTTACGATTTTGTTCGAGATATTGGATCAGGGAATTTCGGTGTAGCGCGACTCATGAGAGATAAACACACCAAAGAACTTGTTGCTGTCAAGTATATCGAACGTGGTGATAAGATTGATGAAAATGTTAAGAGAGAAATAATCAATCACAGGTCTTTGAGACATCCTAATATTGTCAGGTTTAAGGAGGTCATTTTAACACCTACGCATCTGGCCATTGTAATGGAATATGCATCTGGAGGAGAAATGTTTGAAAGAATCAGCAGAGCAGGACGTTTTACTGAGGATGAGGCTCGTTTCTTCTTTCAACAGTTGATATCCGGTGTCAGCTATTGTCATTCAATGCAAGTGTGTCACCGGGATCTGAAGTTGGAAAACACTTTGTTGGATGGAGATCCAGCACTTCATTTGAAGATCTGTGATTTTGGATACTCCAAGTCTTCGGTTCTTCATTCACAACCAAAGTCAACTGTGGGAACTCCGGCTTATATTGCCCCAGAAGTACTGCTGAAGCAAGAGTATGATGGAAAGGTTGCAGATGTATGGTCATGTGGGGTAACCTTATACGTGATGCTAGTGGGATCATATCCTTTTGAAGATCCCGATAATCCAAAGGACTTCCGGAAGACAATTCAGAGGGTTCTCAGTGTCCAGTATTCCGTTCCAGACTTTGTTCAAATATCTCCTGAATGTCGTGAAGTTATATCAAGAATCTTTGTTTTTGACCCTGCAGAGAGAATCACCATTCCAGAAATATTGAAAAATGAATGGTTTCTGAAGAATCTTCCTGCTGACTTGGTGAATGAAAAGTTAACGGATAACCAATTTGAAGAGCCAGATCAGCCCATGCAGAGCATAGATACAATCATGCAGATCATTTCAGAAGCTACCGTACCAGCAGCTGGGAGCTATTTAGACCAGTTTATGCCTGATAATGATACGGATGATGATATGGATGATATGGACTCTGACTATGAACTTGATGTAGATAGCAGTGGGGAGATTGTATATGCCATATAA

Protein sequence

>MsaT025544.1

MNPPPTMDMPIMHDSDRYDFVRDIGSGNFGVARLMRDKHTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGEMFERISRAGRFTEDEARFFFQQLISGVSYCHSMQVCHRDLKLENTLLDGDPALHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKVADVWSCGVTLYVMLVGSYPFEDPDNPKDFRKTIQRVLSVQYSVPDFVQISPECREVISRIFVFDPAERITIPEILKNEWFLKNLPADLVNEKLTDNQFEEPDQPMQSIDTIMQIISEATVPAAGSYLDQFMPDNDTDDDMDDMDSDYELDVDSSGEIVYAI*