AlfalfaGEDB | MsaG025619

M. sativa ssp. caerulea / MsaG025619

KEGG: K12356
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0008194 GO:0009698 GO:0009808 GO:0009987 GO:0016740 GO:0016757 GO:0016758 GO:0019748 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0046527 GO:0047209 GO:0071704 GO:0080043 GO:0080044 GO:1901360
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025619	KEH27552.1	81.210	463	70	3	1	446	53	515	0.0	757

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025619	sp\|Q94A84\|U72E1_ARATH	43.384	461	206	9	5	420	5	455	5.05e-117	372

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025619	tr\|A0A072UD50\|A0A072UD50_MEDTR	81.210	463	70	3	1	446	53	515	0.0	757

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TFs/TRs:

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Gene ID	Type	Classification
MsaG025619	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025619	MtrunA17_Chr5g0403641	81.210	463	70	3	1	446	53	515	0.0	757
MsaG025619	MtrunA17_Chr1g0203051	45.053	566	257	2	487	998	56	621	3.55e-177	532
MsaG025619	MtrunA17_Chr2g0287651	35.182	577	318	2	501	1021	66	642	2.02e-122	396
MsaG025619	MtrunA17_Chr8g0370941	43.284	469	202	15	4	415	5	466	6.79e-103	333
MsaG025619	MtrunA17_Chr7g0232341	37.419	465	228	14	2	420	1	448	3.89e-81	272
MsaG025619	MtrunA17_Chr8g0335141	35.914	465	225	13	1	414	3	445	1.65e-80	271
MsaG025619	MtrunA17_Chr5g0448761	29.846	583	340	10	515	1029	65	646	2.47e-80	279
MsaG025619	MtrunA17_Chr7g0232331	36.853	464	232	14	2	420	1	448	3.65e-80	270
MsaG025619	MtrunA17_Chr2g0308841	53.540	226	89	1	801	1010	1	226	5.37e-80	262
MsaG025619	MtrunA17_Chr7g0232411	36.184	456	232	13	2	413	1	441	8.54e-78	263

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025619	AT3G50740.1	43.384	461	206	9	5	420	5	455	5.13e-118	372
MsaG025619	AT5G66690.1	40.860	465	217	10	5	426	5	454	2.63e-109	349
MsaG025619	AT5G26310.1	39.066	471	227	10	5	431	5	459	8.25e-107	342
MsaG025619	AT4G36770.1	42.048	459	191	13	7	413	4	439	6.07e-97	315
MsaG025619	AT2G18570.1	37.885	454	225	8	5	414	3	443	3.64e-89	295
MsaG025619	AT1G01420.1	38.137	451	219	10	7	413	8	442	2.67e-79	268
MsaG025619	AT1G01420.2	38.137	451	219	10	7	413	11	445	2.87e-79	268
MsaG025619	AT1G01390.1	39.121	455	218	11	7	417	8	447	3.05e-79	268
MsaG025619	AT1G01390.2	39.121	455	218	11	7	417	25	464	4.45e-79	268
MsaG025619	AT4G01070.1	47.203	286	142	3	128	413	167	443	6.78e-76	258

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Find 263 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATATCCACGATAAGAA+CGG	0.611259	5:-10653936	None:intergenic
AAAGCCAAGGAAGAATTCAG+TGG	0.648636	5:+10666701	MsaT025619.1:CDS
AAAGGACATTATTATCTAGA+CGG	0.588899	5:+10663784	MsaT025619.1:CDS
AAAGGACCGGTTTATCCGAT+TGG	0.495178	5:+10654309	MsaT025619.1:CDS
AAAGGTAATCAAAACCGGAC+CGG	0.615059	5:+10657852	MsaT025619.1:CDS
AAAGTGATGGTGGATGAAGA+AGG	0.677276	5:+10654900	MsaT025619.1:CDS
AAAGTTACGTTGAAGTCACA+AGG	0.605910	5:+10654184	MsaT025619.1:CDS
AAATATATCACCGACTCAGC+CGG	0.559680	5:-10654408	None:intergenic
AAATATTGTTCTATGTTACC+TGG	0.550980	5:+10665365	MsaT025619.1:CDS
AAATTGAATTATAAATTGTT+TGG	0.369805	5:+10665687	MsaT025619.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	10653598	10666859	10653598	ID=MsaG025619
Chr5	mRNA	10653598	10666859	10653598	ID=MsaT025619.1;Parent=MsaG025619
Chr5	exon	10653598	10653946	10653598	ID=MsaT025619.1.exon1;Parent=MsaT025619.1
Chr5	CDS	10653598	10653946	10653598	ID=cds.MsaT025619.1;Parent=MsaT025619.1
Chr5	exon	10654067	10654956	10654067	ID=MsaT025619.1.exon2;Parent=MsaT025619.1
Chr5	CDS	10654067	10654956	10654067	ID=cds.MsaT025619.1;Parent=MsaT025619.1
Chr5	exon	10657819	10657943	10657819	ID=MsaT025619.1.exon3;Parent=MsaT025619.1
Chr5	CDS	10657819	10657943	10657819	ID=cds.MsaT025619.1;Parent=MsaT025619.1
Chr5	exon	10663758	10663849	10663758	ID=MsaT025619.1.exon4;Parent=MsaT025619.1
Chr5	CDS	10663758	10663849	10663758	ID=cds.MsaT025619.1;Parent=MsaT025619.1
Chr5	exon	10664973	10665535	10664973	ID=MsaT025619.1.exon5;Parent=MsaT025619.1
Chr5	CDS	10664973	10665535	10664973	ID=cds.MsaT025619.1;Parent=MsaT025619.1
Chr5	exon	10665648	10666406	10665648	ID=MsaT025619.1.exon6;Parent=MsaT025619.1
Chr5	CDS	10665648	10666406	10665648	ID=cds.MsaT025619.1;Parent=MsaT025619.1
Chr5	exon	10666455	10666859	10666455	ID=MsaT025619.1.exon7;Parent=MsaT025619.1
Chr5	CDS	10666455	10666859	10666455	ID=cds.MsaT025619.1;Parent=MsaT025619.1

Gene Sequence

>MsaT025619.1

ATGGTGTCCCAAAAAACTCATGCAGTCCTTCTAGCCAGTCCTGGCATGGGACACCTAATTCCCACCATTGAATTAGGCAAACGGCTTACCACCCACCATAATTTCGATGTAACCATCTTCGTCGTCACAACCGCCACCTCAGATTCAGACACAACAAAATCACATATACTTCAACAAGTATCAAACCCTAATAGCCTTGACATCATTGTAACACCTCCGGTCGATGTCTCTGACAAACTTGACCCAAACAATCCATCCTTAGGATTACAAATTGTTCTAATCATGGTTGAATCTCTTCCTTTTATTCGCTCAAATCCAATCCATGAAGAATCCTCCATCCGTTCTTATCATGAAGCTTTTTCACGCCATGCTAAGAATCATGAACCGCTTTCGATTCTTGGTTGTGAATCGGTTCGATTTGAGGATACCCTTGAAACATTTGTTGCACCTTGGGGACCTATTCATAAAAGTTACGTTGAAGTCACAAGGGAAATATTAACCGTTGATGGGATTTTGGTGAACACGTGGCAAGATCTGGAGCCAACAGCTACTAAGGCGGTTATTGAAAATGGGGTTTTTGGAAAGTTTGTGAAAGGACCGGTTTATCCGATTGGACCGCTAGTAAGAACTGATGAACCGGAGAAGGATGGTGAGAGTGAAAATTTAATTTTGAGTTGGCTTGACCGACAACCGGCTGAGTCGGTGATATATTTGTCATTTGGAAGTGGTGGGACCATGTCGGAAGGTCAGATGAGGGAGTTGGCTTATGGTTTGGAGCTGAGTCAGCAACGGTTTATTTGGGTGGTGCGGCGGCCCACAAAGGACGGTGCATCTGCAACCTTTTTCAACGTTGCGGGTGCAGATGGAACAACTGTGGTGGATTACTTGCCAGAGGGGTTTTTGAATAGGACAAAAGAGGTAGGGCTTTGTGTTCCCATGTGGTCCCCACAAGCTGAGATATTGAAACATCCTTCAACGGGTGGTTTTGTGACACACTGTGGTTGGAATTCTGTGTTGGAGAGTATTCTTAACGGTGTTCCAATGGTTGCATGGCCGCTTTATGCGGAGCAGAAGATGAATGCAACTATGTTATCAGAGGAGCTTGGTGTGGCGGTGAAAGCGACGACGACGGTGGCGGATGGTGGTGTTGTTTGTAGGGAAAAGATAGCGGAGGTGATTAGAAAAGTGATGGTGGATGAAGAAGGTGTAACTATGAGAGTTAAAGTTAAGGAGTATAAGGTCTGCATCGTGTTTAGTCTCTGTGTTTTAAGCAAAGGTAATCAAAACCGGACCGGACAAAGAACCGGTATGTTCATGGGTTCAAGGTTCAAAGGTCGGACCGGAGTTCGACCGGGGTTCAACCGAGCCGATCCTTTGAATGATTGTTACAAAAGGACATTATTATCTAGACGGCTTCTTCCATGGACCAGTTTTCAATATGTTCCACCATGGATCGAAGAAGATCCAATTATCATAAATGGTATGCCTGATATATTGAAGGTGAATATGAAAAATATTAGCATTGAAGATGTTGGGAGGTATGATTTTTTAAATTTAGAAACTGCATATCAATTCTATAGTTGGTATTCAAGATTGAATGGTTTCTCTGTCTGCAAAAGCAAGCTTCTTAGGAATGTAAAGGGTGAGAAGTTGCAACAAACATTTGTTTGTTCTAATGAGGGTTACAGGGAAGCTAATGAGAGAACTACGCCAACTCCAAAGCGTGAACCAAGACGTCAAAGTAGGTGTGGTTGTTTGTCTAAATTTTGTGTTCACGTTAATATTCATACAGAAAGATGGTATGCGACTCTCTTTGCTGATGAACACAACCATACATTGATTGAAGAGAAATATTGTTCTATGTTACCTGGACATAGAAAGTTTACGGAGGCTGATATTTCCCAAATTCAAAACTTTAAAAAAGTTGGAATTAGGACTTGTCAAGTATATGGTGCATTTGCACACAACTTCGGGGGATATGGGAAGATAGGTTTTAGAAGGAAGGACCTATACAATCAAGGGAGGTTGAAACATCTTTTTTGGTGCGATGGTGAGAGCAAATTGAATTATAAATTGTTTGGTGATGTTGTAGCATTTGATGCGACATATAGGAAGATCAAGTATATGTGTCCTTTTGTTGTGTTTTCTGGAGTTAATCACCACAATCAAACAATTATTTTTGCAACTGCTCTCGTATCAAATGAGACCGAAGAAACATATGTCTGGCTACTTGAACAAATGATGGAGGCAATGGAAGGCAAGGCTCCAACATCAGTTATAACCGACGGTGATTTATCCATGAGGAATGCAATTCGTAATGTTTTTCCAGGAGCTCATCATAGGTTATGTGCATGGCATTTGCTACGCAATGCAGTTAGCAATGTAAGTGTTCCTGATTTCATGCCATACCTAAAAAGGTGCATGTTGGGTGACATTGATGTTAGTCAGTTTGAAGAAACCTGGGCTGAAATGGTGAGTAAGTTTGGATTGGAAGACAACAATTGGATACAAGAATTGTACGAGAGAAGAAACATGTGGGCTACAACTTTGATACGAGGTAATTTTTTTGCTTGGATAAGGACCACATCAAGGTGTGAAGCGTTGCATAGCCATATTGGAAAGTATGTTCACTCTAGATGCAATTTAACTGATTTTGTTCAACAATTTCATAGATGCCTAACATACTCTAAATTCAGGGAAGTGGAAGCTGATTTTGAAGGAAGATACGGTGAGTTTGTTTTGCAAACAAATTTGAAATCCTTAGAGAGGTTTGCATCTAAAGCTTCGTCACTAAGAGTCTGCGATAGCCTTAAGATGACAATTCAAGAAATTTACGTTGTTCAAAAGTGGAATGATAGCGGATCAGTGTGGAATGTTTCATACTGCCCTACAACTGGGGATTTTAGATGTAATTGCCAAAGGATGGAGTCGTTGGGGTTGCCTTGTCATCATATTATCGTTGTACTAGTGATATTAGAAAAGGATGAGCTGCCTAGTTGTTTGGTGTTGAAAAGATGGACTAAGAAAGCCAAGGAAGAATTCAGTGGAACTCACACAGATGGCTCTTTCTACTTGGAATCAAATTCTACTGCAAAGCTTGCCAATCTTATCTCTAAAGGAAAGTTTGAAATTAAAGCACTTCCTAAATGCATCATCTGGTTCAAAGTTAAGAGAGCAAATTAA

Protein sequence

>MsaT025619.1

MVSQKTHAVLLASPGMGHLIPTIELGKRLTTHHNFDVTIFVVTTATSDSDTTKSHILQQVSNPNSLDIIVTPPVDVSDKLDPNNPSLGLQIVLIMVESLPFIRSNPIHEESSIRSYHEAFSRHAKNHEPLSILGCESVRFEDTLETFVAPWGPIHKSYVEVTREILTVDGILVNTWQDLEPTATKAVIENGVFGKFVKGPVYPIGPLVRTDEPEKDGESENLILSWLDRQPAESVIYLSFGSGGTMSEGQMRELAYGLELSQQRFIWVVRRPTKDGASATFFNVAGADGTTVVDYLPEGFLNRTKEVGLCVPMWSPQAEILKHPSTGGFVTHCGWNSVLESILNGVPMVAWPLYAEQKMNATMLSEELGVAVKATTTVADGGVVCREKIAEVIRKVMVDEEGVTMRVKVKEYKVCIVFSLCVLSKGNQNRTGQRTGMFMGSRFKGRTGVRPGFNRADPLNDCYKRTLLSRRLLPWTSFQYVPPWIEEDPIIINGMPDILKVNMKNISIEDVGRYDFLNLETAYQFYSWYSRLNGFSVCKSKLLRNVKGEKLQQTFVCSNEGYREANERTTPTPKREPRRQSRCGCLSKFCVHVNIHTERWYATLFADEHNHTLIEEKYCSMLPGHRKFTEADISQIQNFKKVGIRTCQVYGAFAHNFGGYGKIGFRRKDLYNQGRLKHLFWCDGESKLNYKLFGDVVAFDATYRKIKYMCPFVVFSGVNHHNQTIIFATALVSNETEETYVWLLEQMMEAMEGKAPTSVITDGDLSMRNAIRNVFPGAHHRLCAWHLLRNAVSNVSVPDFMPYLKRCMLGDIDVSQFEETWAEMVSKFGLEDNNWIQELYERRNMWATTLIRGNFFAWIRTTSRCEALHSHIGKYVHSRCNLTDFVQQFHRCLTYSKFREVEADFEGRYGEFVLQTNLKSLERFASKASSLRVCDSLKMTIQEIYVVQKWNDSGSVWNVSYCPTTGDFRCNCQRMESLGLPCHHIIVVLVILEKDELPSCLVLKRWTKKAKEEFSGTHTDGSFYLESNSTAKLANLISKGKFEIKALPKCIIWFKVKRAN*