AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG025643


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG025643 MtrunA17_Chr5g0403921 98.000 750 15 0 1 750 1 750 0.0 1520
MsaG025643 MtrunA17_Chr4g0066741 45.556 540 254 10 177 710 181 686 1.03e-152 472
MsaG025643 MtrunA17_Chr2g0286291 40.658 669 318 14 50 710 92 689 3.67e-150 465
MsaG025643 MtrunA17_Chr5g0394201 44.094 508 251 8 178 675 357 841 1.48e-136 429
MsaG025643 MtrunA17_Chr1g0205891 43.574 498 249 8 178 665 370 845 1.13e-131 417
MsaG025643 MtrunA17_Chr4g0066651 40.801 549 291 10 178 708 983 1515 1.71e-125 414
MsaG025643 MtrunA17_Chr3g0095091 40.360 555 292 12 179 712 566 1102 6.90e-117 387
MsaG025643 MtrunA17_Chr5g0442141 39.823 565 301 11 179 722 612 1158 1.66e-115 383
MsaG025643 MtrunA17_Chr3g0137091 37.521 589 325 9 152 719 256 822 2.79e-109 362
MsaG025643 MtrunA17_Chr7g0232121 37.333 525 294 12 184 683 39 553 1.10e-99 327
MsaG025643 MtrunA17_Chr8g0348721 41.505 465 246 9 178 627 981 1434 1.51e-98 335
MsaG025643 MtrunA17_Chr4g0052341 40.040 502 261 11 179 663 740 1218 3.25e-96 328
MsaG025643 MtrunA17_Chr7g0248031 39.440 464 258 8 178 627 988 1442 1.60e-92 317
MsaG025643 MtrunA17_Chr1g0163011 34.310 580 268 18 155 656 175 719 1.13e-88 295
MsaG025643 MtrunA17_Chr1g0183681 30.471 594 342 14 115 659 316 887 5.62e-77 270
MsaG025643 MtrunA17_Chr7g0257101 34.269 499 272 12 51 501 416 906 2.31e-75 266
MsaG025643 MtrunA17_Chr7g0257101 45.455 220 101 5 484 698 1168 1373 2.32e-47 182
MsaG025643 MtrunA17_Chr8g0384531 32.887 523 286 13 184 657 384 890 2.25e-70 250
MsaG025643 MtrunA17_Chr1g0175191 39.233 339 176 9 173 506 510 823 1.52e-69 249
MsaG025643 MtrunA17_Chr1g0175191 46.409 181 94 2 494 674 1050 1227 6.74e-43 168
MsaG025643 MtrunA17_Chr4g0039561 93.333 105 7 0 461 565 41 145 2.74e-64 212
MsaG025643 MtrunA17_Chr5g0393461 31.008 516 299 12 184 654 184 687 7.57e-64 229
MsaG025643 MtrunA17_Chr4g0017211 29.885 522 308 11 184 655 1450 1963 2.64e-60 221
MsaG025643 MtrunA17_Chr4g0040301 28.681 523 282 13 212 655 18 528 6.48e-57 207
MsaG025643 MtrunA17_Chr7g0231521 43.868 212 107 6 184 385 39 248 1.05e-45 175
MsaG025643 MtrunA17_Chr7g0231521 34.553 246 147 3 450 683 231 474 1.15e-37 150
MsaG025643 MtrunA17_Chr8g0343171 95.312 64 3 0 462 525 42 105 8.48e-38 137
MsaG025643 MtrunA17_Chr7g0224051 25.493 761 439 28 10 677 375 1100 7.97e-31 130
MsaG025643 MtrunA17_Chr4g0069451 25.479 522 324 18 151 649 133 612 1.34e-30 128
MsaG025643 MtrunA17_Chr3g0114161 25.461 597 334 23 174 677 653 1231 4.17e-28 121
MsaG025643 MtrunA17_Chr2g0296421 24.897 486 326 12 181 637 508 983 7.24e-26 114
MsaG025643 MtrunA17_Chr7g0232971 26.761 426 245 11 312 702 904 1297 4.16e-25 112
MsaG025643 MtrunA17_Chr1g0190381 34.946 186 108 2 502 674 184 369 5.69e-25 110
MsaG025643 MtrunA17_Chr2g0320751 35.632 174 110 2 467 640 812 983 7.61e-25 110
MsaG025643 MtrunA17_Chr2g0320751 25.956 366 182 11 197 494 391 735 8.52e-21 98.2
MsaG025643 MtrunA17_Chr1g0191141 24.866 559 330 19 206 688 557 1101 8.60e-25 110
MsaG025643 MtrunA17_Chr7g0225791 24.366 513 301 16 206 655 752 1240 1.05e-24 110
MsaG025643 MtrunA17_Chr7g0233021 27.056 377 211 13 312 655 841 1186 2.09e-24 109
MsaG025643 MtrunA17_Chr1g0212331 42.029 138 77 2 524 661 887 1021 6.02e-24 108
MsaG025643 MtrunA17_Chr4g0024921 41.176 119 69 1 524 642 784 901 1.81e-23 106
MsaG025643 MtrunA17_Chr7g0233031 26.989 352 236 6 312 655 861 1199 2.36e-22 103
MsaG025643 MtrunA17_Chr7g0233001 25.205 365 235 10 312 655 128 475 1.22e-21 99.4
MsaG025643 MtrunA17_Chr4g0047081 25.344 509 301 18 206 655 702 1190 4.29e-21 99.4
MsaG025643 MtrunA17_Chr1g0168031 34.868 152 98 1 499 650 980 1130 5.35e-21 99.0
MsaG025643 MtrunA17_Chr1g0168031 25.656 343 181 13 200 494 530 846 3.36e-19 93.2
MsaG025643 MtrunA17_Chr2g0281601 38.983 118 71 1 524 641 1150 1266 5.68e-21 99.0
MsaG025643 MtrunA17_Chr8g0352361 23.562 539 324 17 181 665 358 862 6.69e-21 98.2
MsaG025643 MtrunA17_Chr7g0264371 25.139 541 342 15 132 651 227 725 1.44e-19 94.4
MsaG025643 MtrunA17_Chr1g0149871 42.593 108 59 3 157 263 217 322 1.34e-18 87.8
MsaG025643 MtrunA17_Chr7g0255821 23.659 317 191 10 205 494 251 543 3.57e-17 86.3
MsaG025643 MtrunA17_Chr7g0255821 38.655 119 72 1 524 641 668 786 6.64e-17 85.5
MsaG025643 MtrunA17_Chr7g0232991 32.051 156 102 1 520 671 475 630 4.17e-16 82.4
MsaG025643 MtrunA17_Chr5g0437621 31.868 182 112 3 507 677 1107 1287 7.28e-15 79.0
MsaG025643 MtrunA17_Chr2g0320781 31.618 136 88 2 507 637 94 229 1.56e-13 71.2
MsaG025643 MtrunA17_Chr5g0428401 27.429 175 115 3 507 671 1476 1648 2.37e-13 74.3
MsaG025643 MtrunA17_Chr3g0086111 34.286 105 68 1 524 628 552 655 3.97e-12 70.1
MsaG025643 MtrunA17_Chr3g0086111 24.031 258 170 11 184 431 187 428 7.86e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG025643 AT5G66750.1 71.049 753 193 10 11 750 24 764 0.0 1057
MsaG025643 AT3G06400.3 40.208 674 328 13 45 710 81 687 2.22e-150 466
MsaG025643 AT3G06400.1 40.208 674 328 13 45 710 81 687 2.33e-150 466
MsaG025643 AT3G06400.2 40.208 674 328 13 45 710 81 687 2.76e-150 466
MsaG025643 AT5G18620.1 45.556 540 254 10 177 710 187 692 9.83e-150 464
MsaG025643 AT5G18620.2 45.556 540 254 10 177 710 187 692 1.05e-149 464
MsaG025643 AT5G19310.2 45.079 508 246 8 178 675 116 600 1.16e-140 433
MsaG025643 AT5G19310.1 45.079 508 246 8 178 675 380 864 1.08e-137 433
MsaG025643 AT3G06010.1 43.701 508 254 8 178 675 397 882 3.56e-133 422
MsaG025643 AT2G28290.5 41.959 541 281 11 179 708 750 1268 3.93e-125 413
MsaG025643 AT2G28290.1 41.959 541 281 11 179 708 749 1267 4.32e-125 413
MsaG025643 AT2G28290.2 41.959 541 281 11 179 708 749 1267 4.92e-125 413
MsaG025643 AT2G28290.6 41.959 541 281 11 179 708 750 1268 5.68e-125 412
MsaG025643 AT2G28290.3 41.959 541 281 11 179 708 749 1267 5.74e-125 412
MsaG025643 AT2G28290.4 41.959 541 281 11 179 708 749 1267 5.74e-125 412
MsaG025643 AT2G13370.1 40.853 563 289 13 179 719 620 1160 1.74e-116 386
MsaG025643 AT2G13370.2 40.853 563 289 13 179 719 620 1160 1.74e-116 386
MsaG025643 AT2G13370.3 40.853 563 289 13 179 719 620 1160 1.74e-116 386
MsaG025643 AT2G44980.1 40.862 487 253 10 184 655 51 517 6.94e-110 354
MsaG025643 AT2G44980.3 40.040 502 254 12 184 655 51 535 1.58e-109 353
MsaG025643 AT2G25170.1 38.382 581 306 11 156 712 246 798 3.43e-109 362
MsaG025643 AT2G25170.4 38.382 581 306 11 156 712 246 798 3.43e-109 362
MsaG025643 AT2G25170.3 38.382 581 306 11 156 712 272 824 4.80e-109 362
MsaG025643 AT2G25170.2 38.382 581 306 11 156 712 263 815 5.98e-109 362
MsaG025643 AT4G31900.2 37.699 565 311 11 163 720 163 693 3.91e-108 356
MsaG025643 AT4G31900.1 37.699 565 311 11 163 720 204 734 4.08e-108 357
MsaG025643 AT2G44980.2 40.159 503 253 13 184 655 51 536 5.35e-108 350
MsaG025643 AT4G31900.3 37.699 565 311 11 163 720 204 734 8.73e-108 356
MsaG025643 AT2G46020.2 40.385 468 248 9 178 627 975 1429 1.82e-96 329
MsaG025643 AT2G46020.3 40.385 468 248 9 178 627 975 1429 1.82e-96 329
MsaG025643 AT2G46020.4 40.385 468 248 9 178 627 975 1429 1.82e-96 329
MsaG025643 AT2G46020.5 40.385 468 247 9 178 627 975 1428 3.49e-96 328
MsaG025643 AT2G46020.1 40.385 468 247 9 178 627 975 1428 3.49e-96 328
MsaG025643 AT2G46020.6 40.385 468 247 9 178 627 975 1428 3.49e-96 328
MsaG025643 AT5G44800.1 41.235 502 255 12 179 663 684 1162 5.68e-96 328
MsaG025643 AT2G02090.1 34.846 551 259 15 184 658 213 739 3.23e-88 294
MsaG025643 AT2G18760.4 32.094 511 298 9 183 659 384 879 2.34e-76 268
MsaG025643 AT2G18760.1 32.094 511 298 9 183 659 384 879 2.34e-76 268
MsaG025643 AT2G18760.2 32.094 511 298 9 183 659 384 879 2.34e-76 268
MsaG025643 AT2G18760.7 32.094 511 298 9 183 659 384 879 2.34e-76 268
MsaG025643 AT2G18760.5 32.094 511 298 9 183 659 384 879 2.34e-76 268
MsaG025643 AT2G18760.6 32.094 511 298 9 183 659 384 879 2.34e-76 268
MsaG025643 AT2G18760.3 32.094 511 298 9 183 659 443 938 3.89e-76 268
MsaG025643 AT3G57300.3 35.211 497 256 13 45 495 422 898 9.42e-76 267
MsaG025643 AT3G57300.1 35.211 497 256 13 45 495 422 898 1.06e-75 268
MsaG025643 AT3G57300.1 47.090 189 92 2 500 688 1200 1380 2.94e-44 172
MsaG025643 AT3G57300.4 35.211 497 256 13 45 495 422 898 1.06e-75 268
MsaG025643 AT3G57300.4 47.090 189 92 2 500 688 1200 1380 2.94e-44 172
MsaG025643 AT3G57300.2 33.208 530 255 13 45 495 422 931 6.52e-72 256
MsaG025643 AT3G57300.2 47.090 189 92 2 500 688 1233 1413 4.20e-44 172
MsaG025643 AT3G12810.2 40.506 316 172 6 173 486 521 822 9.66e-69 247
MsaG025643 AT3G12810.2 45.856 181 95 2 494 674 1059 1236 7.93e-43 169
MsaG025643 AT3G12810.1 40.506 316 172 6 173 486 525 826 1.02e-68 247
MsaG025643 AT3G12810.1 45.856 181 95 2 494 674 1063 1240 7.87e-43 169
MsaG025643 AT5G63950.1 31.380 529 299 12 184 666 377 887 1.34e-68 245
MsaG025643 AT1G03750.1 28.315 558 310 13 176 655 131 676 5.40e-68 241
MsaG025643 AT5G63950.2 31.274 518 297 11 184 666 377 870 8.22e-65 234
MsaG025643 AT3G54280.1 31.499 527 296 17 183 655 1450 1965 3.86e-62 227
MsaG025643 AT3G54280.2 31.499 527 296 17 183 655 1481 1996 5.63e-62 227
MsaG025643 AT3G19210.3 30.528 511 308 10 184 654 180 683 6.80e-61 219
MsaG025643 AT3G19210.1 30.528 511 308 10 184 654 180 683 1.31e-60 220
MsaG025643 AT3G19210.2 29.941 511 309 10 184 654 180 681 5.54e-58 213
MsaG025643 AT1G02670.6 26.006 646 327 23 107 641 23 628 3.55e-43 167
MsaG025643 AT1G02670.3 26.466 597 300 21 152 641 91 655 7.82e-43 166
MsaG025643 AT1G02670.5 25.908 633 318 23 107 628 23 615 2.90e-41 160
MsaG025643 AT1G02670.2 26.370 584 291 21 152 628 91 642 5.86e-41 160
MsaG025643 AT5G05130.1 24.818 548 282 17 236 682 361 879 7.93e-37 149
MsaG025643 AT1G48310.1 26.230 488 307 13 174 648 162 609 3.61e-32 133
MsaG025643 AT1G48310.3 26.337 505 318 14 174 664 162 626 4.06e-32 133
MsaG025643 AT1G48310.2 26.230 488 307 13 174 648 167 614 4.39e-32 133
MsaG025643 AT3G16600.1 23.570 577 294 18 170 641 39 573 2.61e-28 121
MsaG025643 AT1G05490.1 26.823 384 250 7 312 679 1008 1376 1.15e-27 120
MsaG025643 AT3G24340.1 24.806 516 319 15 195 667 601 1090 1.68e-25 113
MsaG025643 AT5G07810.1 23.926 489 315 20 174 628 194 659 2.29e-24 110
MsaG025643 AT3G20010.3 44.538 119 65 1 524 642 628 745 4.78e-24 108
MsaG025643 AT3G20010.2 44.538 119 65 1 524 642 603 720 5.53e-24 108
MsaG025643 AT3G20010.1 44.538 119 65 1 524 642 894 1011 7.21e-24 108
MsaG025643 AT3G20010.5 44.538 119 65 1 524 642 894 1011 7.21e-24 108
MsaG025643 AT3G20010.7 44.538 119 65 1 524 642 894 1011 7.21e-24 108
MsaG025643 AT1G08600.1 32.547 212 123 3 506 697 1094 1305 9.02e-24 108
MsaG025643 AT1G08600.4 32.547 212 123 3 506 697 1115 1326 9.72e-24 108
MsaG025643 AT1G08600.3 32.547 212 123 3 506 697 1115 1326 9.72e-24 108
MsaG025643 AT1G08600.2 32.547 212 123 3 506 697 1115 1326 9.72e-24 108
MsaG025643 AT5G43530.1 42.017 119 68 1 522 640 1127 1244 8.51e-23 105
MsaG025643 AT5G43530.1 24.633 341 190 10 200 494 678 997 3.26e-20 96.7
MsaG025643 AT1G50410.2 42.373 118 67 1 524 641 828 944 1.59e-22 103
MsaG025643 AT1G50410.1 42.373 118 67 1 524 641 828 944 1.59e-22 103
MsaG025643 AT1G50410.3 42.373 118 67 1 524 641 828 944 1.59e-22 103
MsaG025643 AT1G05120.1 39.496 119 71 1 524 642 682 799 4.46e-22 102
MsaG025643 AT1G05120.1 29.891 184 87 8 157 314 113 280 1.17e-11 68.9
MsaG025643 AT1G11100.3 40.678 118 69 1 524 641 974 1090 4.52e-22 102
MsaG025643 AT1G11100.5 40.678 118 69 1 524 641 930 1046 4.56e-22 102
MsaG025643 AT1G11100.5 21.727 359 197 12 187 482 402 739 1.04e-12 72.4
MsaG025643 AT1G05120.2 39.496 119 71 1 524 642 725 842 4.94e-22 102
MsaG025643 AT1G05120.2 35.714 126 58 5 157 267 156 273 1.62e-11 68.6
MsaG025643 AT3G42670.2 24.680 547 320 18 206 677 709 1238 5.46e-22 102
MsaG025643 AT3G42670.3 24.680 547 320 18 206 677 709 1238 5.46e-22 102
MsaG025643 AT3G42670.1 24.680 547 320 18 206 677 709 1238 5.46e-22 102
MsaG025643 AT1G11100.2 40.678 118 69 1 524 641 1116 1232 5.49e-22 102
MsaG025643 AT2G21450.2 23.656 651 391 22 48 637 157 762 5.71e-22 102
MsaG025643 AT1G11100.4 40.678 118 69 1 524 641 1117 1233 5.73e-22 102
MsaG025643 AT1G11100.1 40.678 118 69 1 524 641 1073 1189 5.83e-22 102
MsaG025643 AT1G11100.1 21.727 359 197 12 187 482 545 882 7.80e-13 72.8
MsaG025643 AT2G21450.3 23.810 651 390 23 48 637 59 664 5.84e-22 101
MsaG025643 AT3G42670.4 24.680 547 320 18 206 677 711 1240 6.49e-22 102
MsaG025643 AT2G21450.1 23.656 651 391 22 48 637 150 755 7.09e-22 101
MsaG025643 AT2G16390.2 23.646 554 341 21 144 637 301 832 7.79e-22 101
MsaG025643 AT5G22750.1 40.476 126 74 1 515 640 872 996 7.93e-22 102
MsaG025643 AT5G22750.1 24.228 421 227 14 141 494 353 748 1.47e-20 97.8
MsaG025643 AT2G16390.1 23.466 554 342 20 144 637 298 829 8.54e-22 101
MsaG025643 AT5G20420.1 24.863 547 320 18 206 677 714 1244 1.59e-21 100
MsaG025643 AT1G02670.4 27.226 393 196 16 152 485 91 452 2.72e-21 99.0
MsaG025643 AT1G02670.1 38.136 118 72 1 524 641 527 643 3.93e-21 99.0
MsaG025643 AT1G02670.1 30.000 290 153 12 107 368 61 328 2.84e-20 96.3
MsaG025643 AT1G61140.3 38.983 118 71 1 524 641 967 1083 4.19e-21 99.8
MsaG025643 AT1G02670.7 38.136 118 72 1 524 641 516 632 4.45e-21 99.0
MsaG025643 AT1G02670.7 32.627 236 131 9 152 368 91 317 3.89e-20 95.9
MsaG025643 AT1G61140.1 38.983 118 71 1 524 641 1125 1241 5.86e-21 99.4
MsaG025643 AT2G40770.2 31.783 129 78 2 524 642 1451 1579 5.59e-12 70.1
MsaG025643 AT2G40770.1 31.783 129 78 2 524 642 1451 1579 5.59e-12 70.1
MsaG025643 AT2G40770.3 31.783 129 78 2 524 642 1451 1579 5.59e-12 70.1

Find 161 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATTATTAGAGGGAATTT+TGG 0.164129 5:-10893084 None:intergenic
TCCAACAAGTCTTAATAATT+TGG 0.194961 5:+10894690 MsaT025643.1:CDS
TGAGACACTGGAGAAATATT+TGG 0.241336 5:+10894518 MsaT025643.1:CDS
CAAAGCCTGTTCATGTTTAC+AGG 0.245028 5:+10896218 MsaT025643.1:CDS
GTCGTTCTTCACATTGTTCT+TGG 0.264553 5:-10891384 None:intergenic
TCCACCAGGGCTGGTGGGTT+GGG 0.265341 5:+10896006 MsaT025643.1:CDS
CCAAGCTTCATTCAATTCTT+AGG 0.276043 5:+10894376 MsaT025643.1:CDS
GAGAAAGAAACCCAATTGTT+TGG 0.304226 5:-10892785 None:intergenic
GAATCCTCAAATGGATTTAC+AGG 0.307703 5:+10896165 MsaT025643.1:intron
ACTCTACTCAGAGTTTCTTT+TGG 0.310547 5:+10891775 MsaT025643.1:CDS
CTCTTAGAATCAGTCTTTGA+TGG 0.316379 5:+10894748 MsaT025643.1:CDS
ATGATGCTAAGAAGTGTTTA+AGG 0.317013 5:+10893127 MsaT025643.1:CDS
TTCCACCAGGGCTGGTGGGT+TGG 0.318371 5:+10896005 MsaT025643.1:CDS
ATTGGATGAATGAGATTAAT+AGG 0.319332 5:+10892871 MsaT025643.1:CDS
AGAGGAGCAATTATCATATA+TGG 0.330903 5:-10892834 None:intergenic
TCACAGATACCTCTTCTTCT+AGG 0.335211 5:-10891436 None:intergenic
TCAATTGCTCGACCGATTGC+TGG 0.340852 5:+10895014 MsaT025643.1:CDS
GCGCACAAAGCCTTCCCTTA+TGG 0.344214 5:+10896439 MsaT025643.1:CDS
ATATTAGGAAGAGGATGTTT+TGG 0.349530 5:+10896944 MsaT025643.1:intron
TTGATTTCCTTGTGGCAAAA+TGG 0.351243 5:+10892717 MsaT025643.1:CDS
TTCTTTAGATCTTGTAATCA+TGG 0.352463 5:-10892571 None:intergenic
ACCAAATTATTAAGACTTGT+TGG 0.352586 5:-10894691 None:intergenic
GGGAAGACAATCCAAACAAT+TGG 0.358044 5:+10892774 MsaT025643.1:CDS
TCATAAGAAGTTATTATTAG+AGG 0.362252 5:-10893093 None:intergenic
ATAGCTCAGCCAAGTTATTC+TGG 0.362438 5:-10893390 None:intergenic
GCTTCAGGGAAAAGCCAAAA+AGG 0.366302 5:+10892539 MsaT025643.1:intron
GCCTTCCCTTATGGATGAAA+TGG 0.367031 5:+10896448 MsaT025643.1:CDS
GACCAAAGTGCTAGATATAA+TGG 0.367410 5:+10895177 MsaT025643.1:CDS
CTTGCTGATCAAATGGGTCT+TGG 0.368472 5:+10892753 MsaT025643.1:CDS
TCAAGAGATGAGAATATATC+AGG 0.373285 5:-10893436 None:intergenic
AAGAAAGATTCTGCAGTTGC+TGG 0.373653 5:-10895980 None:intergenic
ATTAATCTCATTCATCCAAT+TGG 0.375683 5:-10892868 None:intergenic
TTCGAAGTTTGCAGGATTGA+TGG 0.389977 5:+10895223 MsaT025643.1:CDS
TGATTCACAGTTTAATAAGT+TGG 0.390841 5:+10891730 MsaT025643.1:CDS
CTCTATCAACCCTCTCCAAT+TGG 0.399370 5:+10892853 MsaT025643.1:CDS
GAAGGAAGTGGAGGTGAAAT+CGG 0.400005 5:+10891580 MsaT025643.1:intron
TTCTTTCCACCAGGGCTGGT+GGG 0.401539 5:+10896001 MsaT025643.1:CDS
TTTCTTCTTTCCACCAGGGC+TGG 0.404452 5:+10895997 MsaT025643.1:CDS
AAAAGGGTTTCGAAGTTTGC+AGG 0.409783 5:+10895215 MsaT025643.1:CDS
TTTCTCAGTTCTTTCTTCCT+CGG 0.414953 5:-10892622 None:intergenic
GTGGTGATGCCAACTGCGGC+AGG 0.417009 5:+10897131 MsaT025643.1:CDS
TTGCTGATCAAATGGGTCTT+GGG 0.417375 5:+10892754 MsaT025643.1:CDS
AAACCTCCATTTCATCCATA+AGG 0.417476 5:-10896454 None:intergenic
GAGCTGATGCCTTTACTAAC+TGG 0.418049 5:+10892654 MsaT025643.1:CDS
TGGGATTCTTGCTGATCAAA+TGG 0.425534 5:+10892746 MsaT025643.1:CDS
CTTCTTTCCACCAGGGCTGG+TGG 0.426111 5:+10896000 MsaT025643.1:CDS
AACTGTGAATCATTCAGATT+CGG 0.441376 5:-10891719 None:intergenic
GGAGGTGAAATCGGAGGAAG+AGG 0.441683 5:+10891589 MsaT025643.1:CDS
TTCATCCTACGCAACAGAAA+TGG 0.442959 5:-10894399 None:intergenic
GGAAGACAATCCAAACAATT+GGG 0.444585 5:+10892775 MsaT025643.1:CDS
AGTTTGCAGGATTGATGGTT+CGG 0.447412 5:+10895228 MsaT025643.1:CDS
GCGAGCCTGTAAACATGAAC+AGG 0.450451 5:-10896223 None:intergenic
AGTTTACTCTCTTCTTCATC+CGG 0.450638 5:-10892200 None:intergenic
GTTCGGTGAAGCTGGATGAT+AGG 0.450647 5:+10895245 MsaT025643.1:CDS
TCATCTAAAATCGAAAGGAT+TGG 0.454533 5:+10892806 MsaT025643.1:CDS
TGAAGACCTGGAGAAGCTCT+TGG 0.461434 5:+10897025 MsaT025643.1:CDS
GATTGATGGTTCGGTGAAGC+TGG 0.464329 5:+10895237 MsaT025643.1:CDS
TTGTGGCAAAATGGATTGAA+TGG 0.465688 5:+10892726 MsaT025643.1:CDS
AACCTCCATTTCATCCATAA+GGG 0.465902 5:-10896453 None:intergenic
GAATCTTTCTTCTTTCCACC+AGG 0.466276 5:+10895992 MsaT025643.1:CDS
TCAAATGGATTTACAGGCCA+TGG 0.467434 5:+10896171 MsaT025643.1:CDS
TATTCCCAACCCACCAGCCC+TGG 0.468568 5:-10896010 None:intergenic
TGAGCATCAGAAGAACTTGC+AGG 0.472788 5:+10894482 MsaT025643.1:CDS
GGTGATGCCAACTGCGGCAG+GGG 0.474198 5:+10897133 MsaT025643.1:CDS
TCCAGGCCCTTTAAGAGAAA+AGG 0.476786 5:-10897102 None:intergenic
ATCCATTATATCTAGCACTT+TGG 0.479735 5:-10895179 None:intergenic
TGCGGGTGAACAAGAGAAAC+CGG 0.480040 5:+10892181 MsaT025643.1:CDS
TTTCTCTTAAAGGGCCTGGA+TGG 0.482002 5:+10897105 MsaT025643.1:CDS
GGCATCACCACTTCCCATCC+AGG 0.482270 5:-10897119 None:intergenic
CAAATAGCCGCTCCAGCAAT+CGG 0.485889 5:-10895026 None:intergenic
CTGTCGGGAAAGAGCACTAC+TGG 0.491725 5:+10894220 MsaT025643.1:CDS
TTACCATGGTAGATAACAGC+AGG 0.494363 5:-10893009 None:intergenic
CAGTAGTGCTCTTTCCCGAC+AGG 0.496157 5:-10894219 None:intergenic
GTATTCTTTATGACAGTGAC+TGG 0.499135 5:+10896055 MsaT025643.1:CDS
GGGATTCTTGCTGATCAAAT+GGG 0.499534 5:+10892747 MsaT025643.1:CDS
CATAAGAAGTTATTATTAGA+GGG 0.501326 5:-10893092 None:intergenic
TGGAGCAACAATGGAAGAGT+TGG 0.503178 5:+10894240 MsaT025643.1:CDS
AAGACTGATTCTAAGAGGTC+AGG 0.504261 5:-10894742 None:intergenic
CTTTCTCATCTAAAATCGAA+AGG 0.509899 5:+10892801 MsaT025643.1:CDS
AGTGTTTAAGGTCATACAGT+TGG 0.511185 5:+10893139 MsaT025643.1:CDS
TCTTCTTCTAGGACTGAAGT+TGG 0.512151 5:-10891425 None:intergenic
ATGGCCTGTAAATCCATTTG+AGG 0.512435 5:-10896169 None:intergenic
AGAGAAAGGACAATTTCATC+AGG 0.513981 5:+10896415 MsaT025643.1:CDS
ATCAACTGAAGGGTGTTAAG+TGG 0.517699 5:+10892694 MsaT025643.1:CDS
CTCTCTGATATTTGTTACCA+TGG 0.519080 5:-10893023 None:intergenic
GGATGAAGAAGAGAGTAAAC+TGG 0.520666 5:+10892202 MsaT025643.1:CDS
GAAGTTGGTGATTCCACTGC+AGG 0.522177 5:-10891410 None:intergenic
TGTACTCCAGAATCCTCAAA+TGG 0.523054 5:+10896156 MsaT025643.1:intron
CTTCTGATGCTCAGTCATGT+TGG 0.524860 5:-10894472 None:intergenic
CTCATTCATCCAATTGGAGA+GGG 0.526511 5:-10892862 None:intergenic
ATGGATAGATGTCACAGAAT+CGG 0.529752 5:+10896190 MsaT025643.1:CDS
TGCGATCCAAGAGCTTCTCC+AGG 0.531714 5:-10897031 None:intergenic
GAGCATGTGGTGATAGAGAA+AGG 0.531994 5:+10896401 MsaT025643.1:CDS
CTAAAATCGAAAGGATTGGA+TGG 0.533235 5:+10892810 MsaT025643.1:CDS
TTCTCTTAAAGGGCCTGGAT+GGG 0.540931 5:+10897106 MsaT025643.1:CDS
TAAAGGGCCTGGATGGGAAG+TGG 0.541437 5:+10897112 MsaT025643.1:CDS
TTAGGCCATTTCTGTTGCGT+AGG 0.541737 5:+10894394 MsaT025643.1:CDS
CCTAAGAATTGAATGAAGCT+TGG 0.544169 5:-10894376 None:intergenic
CATCAAAGACTGATTCTAAG+AGG 0.545515 5:-10894747 None:intergenic
ATTGAAATCTTATCAACTGA+AGG 0.547286 5:+10892683 MsaT025643.1:CDS
AACTTCAGTCCTAGAAGAAG+AGG 0.548276 5:+10891427 MsaT025643.1:CDS
TGCTGGAGCGGCTATTTGCA+CGG 0.548438 5:+10895031 MsaT025643.1:CDS
AGAATAACTTGGCTGAGCTA+TGG 0.550121 5:+10893392 MsaT025643.1:CDS
TACACCGCTCCAGAATAACT+TGG 0.551035 5:+10893381 MsaT025643.1:CDS
CTCTTGAAGAATTTGAGTCA+TGG 0.551617 5:+10893452 MsaT025643.1:CDS
GGGAAATTAGCTGTTGAGAG+TGG 0.553051 5:-10897165 None:intergenic
AGCTCGTGCAAAGGAAGAAG+AGG 0.554090 5:+10891679 MsaT025643.1:CDS
GAAGTATCTTGTTGTTGATG+AGG 0.554954 5:+10893161 MsaT025643.1:CDS
TGGTTGTATCATTGAAGTCC+TGG 0.555540 5:-10895960 None:intergenic
TGTGGCAAAATGGATTGAAT+GGG 0.556206 5:+10892727 MsaT025643.1:CDS
CAATTGGAGAGGGTTGATAG+AGG 0.557093 5:-10892852 None:intergenic
TAGATAACAGCAGGGAGCGT+TGG 0.559287 5:-10893000 None:intergenic
TGCTCGACCGATTGCTGGAG+CGG 0.560952 5:+10895019 MsaT025643.1:CDS
AAACATATGCCTAGAACAGT+TGG 0.561393 5:+10893060 MsaT025643.1:CDS
TTCCCTTATGGATGAAATGG+AGG 0.562107 5:+10896451 MsaT025643.1:CDS
GAGCACTACTGGAGCAACAA+TGG 0.565222 5:+10894231 MsaT025643.1:CDS
CATCCTCACTAATTTGCAGT+TGG 0.566871 5:-10893317 None:intergenic
TCCATTTCATCCATAAGGGA+AGG 0.568951 5:-10896449 None:intergenic
TGAAGCTGGATGATAGGAAA+CGG 0.574761 5:+10895251 MsaT025643.1:CDS
TCATTTAATTAATGAGACAC+TGG 0.575085 5:+10894506 MsaT025643.1:CDS
TTGGACAAGAAACGATCAGT+TGG 0.576949 5:+10894537 MsaT025643.1:CDS
TCCCAACCCACCAGCCCTGG+TGG 0.577934 5:-10896007 None:intergenic
TTGAAATCTTATCAACTGAA+GGG 0.577947 5:+10892684 MsaT025643.1:CDS
AATCTTTCTTCTTTCCACCA+GGG 0.584100 5:+10895993 MsaT025643.1:CDS
GCTGGATGATAGGAAACGGC+AGG 0.584808 5:+10895255 MsaT025643.1:CDS
AAGAACTGAGAAAGAGCAGA+GGG 0.591530 5:+10892632 MsaT025643.1:CDS
GTGATGCCAACTGCGGCAGG+GGG 0.593834 5:+10897134 MsaT025643.1:CDS
ATCAGAGAGATGAAATCAGA+AGG 0.593838 5:+10893037 MsaT025643.1:CDS
TGGTGATGCCAACTGCGGCA+GGG 0.594432 5:+10897132 MsaT025643.1:CDS
GAAAATGGATGATATTACAA+TGG 0.599478 5:+10891799 MsaT025643.1:CDS
AGGTTCTGATCTTCAGTCAG+TGG 0.599711 5:+10895155 MsaT025643.1:intron
AGATATTAGTGATGAAGACC+TGG 0.600162 5:+10897013 MsaT025643.1:CDS
TATTCTTTATGACAGTGACT+GGG 0.603626 5:+10896056 MsaT025643.1:CDS
TCTCATTCATCCAATTGGAG+AGG 0.606036 5:-10892863 None:intergenic
TAAAATCGAAAGGATTGGAT+GGG 0.606925 5:+10892811 MsaT025643.1:CDS
CTCCCTGCTGTTATCTACCA+TGG 0.607078 5:+10893006 MsaT025643.1:CDS
CTGATGCCTTTACTAACTGG+TGG 0.607326 5:+10892657 MsaT025643.1:CDS
CGCTACTGCACAATCAGTAG+AGG 0.608250 5:+10896243 MsaT025643.1:CDS
AAATGTGAAGACTGAAGATG+TGG 0.608842 5:+10892593 MsaT025643.1:CDS
GGAAGTGGAGGTGAAATCGG+AGG 0.610191 5:+10891583 MsaT025643.1:intron
TCAATTATCTCATTCACAGG+AGG 0.610756 5:-10894976 None:intergenic
TGTGTATGTGAAGGAAGTGG+AGG 0.617706 5:+10891571 MsaT025643.1:intron
TTAAGTGGTTGATTTCCTTG+TGG 0.620476 5:+10892709 MsaT025643.1:CDS
CAAGTTGAAGCTTGAGCATG+TGG 0.621259 5:+10896388 MsaT025643.1:CDS
TGTACCGAAAACAATGGCTG+AGG 0.624038 5:+10891637 MsaT025643.1:CDS
GTTGCTGAAAGCTCGTGCAA+AGG 0.624525 5:+10891670 MsaT025643.1:CDS
GATTCTGTGACATCTATCCA+TGG 0.629171 5:-10896188 None:intergenic
AAAGAACTGAGAAAGAGCAG+AGG 0.631747 5:+10892631 MsaT025643.1:CDS
ATGCCAACTGCAAATTAGTG+AGG 0.632322 5:+10893314 MsaT025643.1:CDS
CTGATTCTAAGAGGTCAGGA+TGG 0.643894 5:-10894738 None:intergenic
GAAGAACGACGATCCTGCAG+TGG 0.650078 5:+10891397 MsaT025643.1:CDS
GCTATTTGCACGGAATCACA+AGG 0.650119 5:+10895041 MsaT025643.1:CDS
TCAGCCAAGTTATTCTGGAG+CGG 0.671648 5:-10893385 None:intergenic
ATGTTGAGCTAATGTTGCCA+CGG 0.684746 5:+10894427 MsaT025643.1:CDS
ATCGCTTGTACCGAAAACAA+TGG 0.696297 5:+10891631 MsaT025643.1:CDS
TCGAGATGAAGAAACCGCTG+AGG 0.697243 5:+10896974 MsaT025643.1:CDS
TGAAGATGTGGATTTGACCG+AGG 0.703232 5:+10892605 MsaT025643.1:CDS
TACAAGTGTCAGCTGCAGTG+AGG 0.704555 5:-10896035 None:intergenic
TACCATGGTAGATAACAGCA+GGG 0.711491 5:-10893008 None:intergenic
GGAAGTGGTGATGCCAACTG+CGG 0.740252 5:+10897127 MsaT025643.1:CDS
ACTCACAGTATTGCATTGTG+AGG 0.751205 5:-10892264 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 10891377 10897181 10891377 ID=MsaG025643
Chr5 mRNA 10891377 10897181 10891377 ID=MsaT025643.1;Parent=MsaG025643
Chr5 exon 10891377 10891448 10891377 ID=MsaT025643.1.exon1;Parent=MsaT025643.1
Chr5 CDS 10891377 10891448 10891377 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Chr5 exon 10891584 10891820 10891584 ID=MsaT025643.1.exon2;Parent=MsaT025643.1
Chr5 CDS 10891584 10891820 10891584 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Chr5 exon 10892179 10892280 10892179 ID=MsaT025643.1.exon3;Parent=MsaT025643.1
Chr5 CDS 10892179 10892280 10892179 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Chr5 exon 10892546 10892892 10892546 ID=MsaT025643.1.exon4;Parent=MsaT025643.1
Chr5 CDS 10892546 10892892 10892546 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Chr5 exon 10892993 10893182 10892993 ID=MsaT025643.1.exon5;Parent=MsaT025643.1
Chr5 CDS 10892993 10893182 10892993 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Chr5 exon 10893298 10893473 10893298 ID=MsaT025643.1.exon6;Parent=MsaT025643.1
Chr5 CDS 10893298 10893473 10893298 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Chr5 exon 10894213 10894282 10894213 ID=MsaT025643.1.exon7;Parent=MsaT025643.1
Chr5 CDS 10894213 10894282 10894213 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Chr5 exon 10894369 10894558 10894369 ID=MsaT025643.1.exon8;Parent=MsaT025643.1
Chr5 CDS 10894369 10894558 10894369 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Chr5 exon 10894683 10894775 10894683 ID=MsaT025643.1.exon9;Parent=MsaT025643.1
Chr5 CDS 10894683 10894775 10894683 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Chr5 exon 10894968 10895062 10894968 ID=MsaT025643.1.exon10;Parent=MsaT025643.1
Chr5 CDS 10894968 10895062 10894968 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Chr5 exon 10895157 10895276 10895157 ID=MsaT025643.1.exon11;Parent=MsaT025643.1
Chr5 CDS 10895157 10895276 10895157 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Chr5 exon 10895958 10896077 10895958 ID=MsaT025643.1.exon12;Parent=MsaT025643.1
Chr5 CDS 10895958 10896077 10895958 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Chr5 exon 10896166 10896264 10896166 ID=MsaT025643.1.exon13;Parent=MsaT025643.1
Chr5 CDS 10896166 10896264 10896166 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Chr5 exon 10896362 10896472 10896362 ID=MsaT025643.1.exon14;Parent=MsaT025643.1
Chr5 CDS 10896362 10896472 10896362 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Chr5 exon 10896951 10897181 10896951 ID=MsaT025643.1.exon15;Parent=MsaT025643.1
Chr5 CDS 10896951 10897181 10896951 ID=cds.MsaT025643.1;Parent=MsaT025643.1
Gene Sequence

>MsaT025643.1

ATGGATTCCAAGAACAATGTGAAGAACGACGATCCTGCAGTGGAATCACCAACTTCAGTCCTAGAAGAAGAGGAAGTGGAGGTGAAATCGGAGGAAGAGGTGATTGCAGATGATGTGTCATCGCTTGTACCGAAAACAATGGCTGAGGAAGAAGAGAAGTTGCTGAAAGCTCGTGCAAAGGAAGAAGAGGAAAAGATTGAAGTTGCGCCGAATCTGAATGATTCACAGTTTAATAAGTTGGATGAGCTTTTGACACAGACTAAACTCTACTCAGAGTTTCTTTTGGAGAAAATGGATGATATTACAATGGCTGCGGGTGAACAAGAGAAACCGGATGAAGAAGAGAGTAAACTGGTTGCAAAAAAGAAGGGCCGTGGATCAAAAAGAAAGGCAGCCTCACAATGCAATACTGGAAAAGCCAAAAAGGCAGTTGAAGCCATGATTACAAGATCTAAAGAAAATGTGAAGACTGAAGATGTGGATTTGACCGAGGAAGAAAGAACTGAGAAAGAGCAGAGGGAGCTGATGCCTTTACTAACTGGTGGAAAATTGAAATCTTATCAACTGAAGGGTGTTAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACAATTGGGTTTCTTTCTCATCTAAAATCGAAAGGATTGGATGGGCCATATATGATAATTGCTCCTCTATCAACCCTCTCCAATTGGATGAATGAGATTAATAGGTTTACACCAACGCTCCCTGCTGTTATCTACCATGGTAACAAATATCAGAGAGATGAAATCAGAAGGAAACATATGCCTAGAACAGTTGGCCCAAAATTCCCTCTAATAATAACTTCTTATGAGATTGCTATGAATGATGCTAAGAAGTGTTTAAGGTCATACAGTTGGAAGTATCTTGTTGTTGATGAGGGACACAGGCTGAAAAATGCCAACTGCAAATTAGTGAGGATGTTGAAATACATCAGTGTTGAAAATAAGCTTCTTTTGACTGGTACACCGCTCCAGAATAACTTGGCTGAGCTATGGTCACTGCTGCACTTCATCTTACCTGATATATTCTCATCTCTTGAAGAATTTGAGTCATGGTTTAACCTGTCGGGAAAGAGCACTACTGGAGCAACAATGGAAGAGTTGGAAGAGAAAAGAAGAACCCAAGTTGTGGCCAAGCTTCATTCAATTCTTAGGCCATTTCTGTTGCGTAGGATGAAGTCTGATGTTGAGCTAATGTTGCCACGGAAAAAAGAGATCATTGTTTATGCCAACATGACTGAGCATCAGAAGAACTTGCAGGATCATTTAATTAATGAGACACTGGAGAAATATTTGGACAAGAAACGATCAGTTGGACGTGCTCCAACAAGTCTTAATAATTTGGTTATTCAGCTAAGAAAAGTCTGTAACCATCCTGACCTCTTAGAATCAGTCTTTGATGGTTCATATTTTTATCCTCCTGTGAATGAGATAATTGAAAAATGTGGAAAATTTCAATTGCTCGACCGATTGCTGGAGCGGCTATTTGCACGGAATCACAAGGTTCTGATCTTCAGTCAGTGGACCAAAGTGCTAGATATAATGGATTATTATTTTAGTGAAAAGGGTTTCGAAGTTTGCAGGATTGATGGTTCGGTGAAGCTGGATGATAGGAAACGGCAGATCCAGGACTTCAATGATACAACCAGCAACTGCAGAATCTTTCTTCTTTCCACCAGGGCTGGTGGGTTGGGAATAAACCTCACTGCAGCTGACACTTGTATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCACAGAATCGGTCAAACAAAGCCTGTTCATGTTTACAGGCTCGCTACTGCACAATCAGTAGAGGGTCGGATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATAGAGAAAGGACAATTTCATCAGGAGCGCACAAAGCCTTCCCTTATGGATGAAATGGAGGAAGAGGATGTTTTGGCATTGCTTCGAGATGAAGAAACCGCTGAGGACAAAATGATACAGAAAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGCGATCTTGTTATCAATAGCTCAACTGATGATAAAGCTGCAGTTAGTACCTTTTCTCTTAAAGGGCCTGGATGGGAAGTGGTGATGCCAACTGCGGCAGGGGGCATGCTTTCCACTCTCAACAGCTAA

Protein sequence

>MsaT025643.1

MDSKNNVKNDDPAVESPTSVLEEEEVEVKSEEEVIADDVSSLVPKTMAEEEEKLLKARAKEEEEKIEVAPNLNDSQFNKLDELLTQTKLYSEFLLEKMDDITMAAGEQEKPDEEESKLVAKKKGRGSKRKAASQCNTGKAKKAVEAMITRSKENVKTEDVDLTEEERTEKEQRELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKSKGLDGPYMIIAPLSTLSNWMNEINRFTPTLPAVIYHGNKYQRDEIRRKHMPRTVGPKFPLIITSYEIAMNDAKKCLRSYSWKYLVVDEGHRLKNANCKLVRMLKYISVENKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFESWFNLSGKSTTGATMEELEEKRRTQVVAKLHSILRPFLLRRMKSDVELMLPRKKEIIVYANMTEHQKNLQDHLINETLEKYLDKKRSVGRAPTSLNNLVIQLRKVCNHPDLLESVFDGSYFYPPVNEIIEKCGKFQLLDRLLERLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDDRKRQIQDFNDTTSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTKPSLMDEMEEEDVLALLRDEETAEDKMIQKDISDEDLEKLLDRSDLVINSSTDDKAAVSTFSLKGPGWEVVMPTAAGGMLSTLNS*