AlfalfaGEDB | MsaG025705

M. sativa ssp. caerulea / MsaG025705

KEGG: -
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF05142.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025705	XP_003612086.1	87.349	332	20	8	1	319	1	323	0.0	520

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025705	sp\|Q9SD40\|SRS1_ARATH	43.669	387	133	13	1	319	1	370	1.83e-75	239

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025705	tr\|G7KGA2\|G7KGA2_MEDTR	87.349	332	20	8	1	319	1	323	0.0	520

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TFs/TRs:

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Gene ID	Type	Classification
MsaG025705	TF	SRS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025705	MtrunA17_Chr5g0404781	87.349	332	20	8	1	319	1	323	0.0	520
MsaG025705	MtrunA17_Chr8g0372461	53.757	346	118	12	1	319	1	331	1.34e-94	283
MsaG025705	MtrunA17_Chr3g0142171	42.138	318	150	11	1	314	1	288	2.31e-61	197
MsaG025705	MtrunA17_Chr1g0155791	53.043	230	83	7	104	319	120	338	4.00e-60	195
MsaG025705	MtrunA17_Chr5g0441921	50.314	159	55	4	106	246	124	276	1.13e-39	142
MsaG025705	MtrunA17_Chr4g0035591	45.890	146	59	1	103	248	17	142	2.79e-39	137
MsaG025705	MtrunA17_Chr3g0082511	43.750	160	74	3	106	251	134	291	3.15e-38	138
MsaG025705	MtrunA17_Chr8g0353111	42.857	168	76	3	106	254	124	290	3.50e-34	127
MsaG025705	MtrunA17_Chr2g0281741	31.707	123	54	5	22	140	88	184	4.38e-14	69.7
MsaG025705	MtrunA17_Chr0c01g0489181	29.268	123	58	4	22	140	4	101	3.44e-12	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025705	AT3G51060.1	43.669	387	133	13	1	319	1	370	1.86e-76	239
MsaG025705	AT5G66350.1	48.045	358	120	16	1	319	1	331	3.33e-75	234
MsaG025705	AT5G66350.3	48.116	345	115	15	1	306	1	320	9.22e-73	228
MsaG025705	AT5G66350.2	48.116	345	115	15	1	306	1	320	1.48e-72	228
MsaG025705	AT1G19790.2	40.437	366	148	14	1	318	1	344	3.45e-66	211
MsaG025705	AT1G19790.1	40.437	366	148	14	1	318	1	344	3.45e-66	211
MsaG025705	AT1G75520.1	51.667	240	80	9	102	319	121	346	5.12e-65	208
MsaG025705	AT4G36260.1	38.757	338	167	14	1	317	1	319	1.69e-48	165
MsaG025705	AT2G18120.1	41.961	255	87	10	1	248	6	206	3.17e-46	156
MsaG025705	AT2G18120.2	41.339	254	88	10	1	248	6	204	2.41e-44	151

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Find 75 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCATGTTAAGAGTACT+TGG	0.425175	5:+11653879	MsaT025705.1:CDS
AACTCATGTTAAGAGTACTT+GGG	0.622414	5:+11653880	MsaT025705.1:CDS
AAGAATTGCGTACCACTAGA+AGG	0.471301	5:-11654984	None:intergenic
AATAGATCTACTGTGTTTGT+GGG	0.559670	5:+11653743	MsaT025705.1:CDS
AATAGTTACAATATGGCTAC+CGG	0.553111	5:+11654819	MsaT025705.1:CDS
AATTCCTTCATGCCTTCTAG+TGG	0.576741	5:+11654972	MsaT025705.1:CDS
ACAGAAGAGATAAGGTTTAA+GGG	0.430955	5:-11654888	None:intergenic
ACTAGAATTAGAGGCGTTTC+CGG	0.373528	5:-11654838	None:intergenic
AGAACTTGTTGTAAGAGTAG+AGG	0.544764	5:+11653845	MsaT025705.1:CDS
AGAGTGAGTGAAGGGTTTGT+AGG	0.387801	5:-11654022	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	11653479	11655025	11653479	ID=MsaG025705
Chr5	mRNA	11653479	11655025	11653479	ID=MsaT025705.1;Parent=MsaG025705
Chr5	exon	11653479	11654055	11653479	ID=MsaT025705.1.exon1;Parent=MsaT025705.1
Chr5	CDS	11653479	11654055	11653479	ID=cds.MsaT025705.1;Parent=MsaT025705.1
Chr5	exon	11654643	11655025	11654643	ID=MsaT025705.1.exon2;Parent=MsaT025705.1
Chr5	CDS	11654643	11655025	11654643	ID=cds.MsaT025705.1;Parent=MsaT025705.1

Gene Sequence

>MsaT025705.1

ATGGCTGGTTTATTTTCATTAGGAAGAACTGAAGAAGAAAACCAACAGAATAATAATAATCCAACAACAGAATTCTGGTATAATAAGAATGATGATTCTGTTGTTTCTAATTCATACCGTGGTTTTGAGATTTGGAACCAACATCAACATCAACAACACTTGTTTTCTTTACAACAACCTCAGCAGCAGCAGCAGCAACAAGATCTTTACTCCTCTGGTGTTGTGTTAGGAGTGGGACCTACTAGGGTTTGTTCTTCTGATGAGAATAGATCTACTGTGTTTGTGGGAAGTGGAAGTGGAAGTGGAGGTATAAGTTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTCCTCATATGAGATGTAGAACTTGTTGTAAGAGTAGAGGTTTTGATTGTCAAACTCATGTTAAGAGTACTTGGGTTCCTGCTGCTAGAAGAAGAGAAAGACAACAACAACAACTTTCTGCTCCTAAATCATCTCAACAACATGGAGAGAGAGATCTTAACAATAACAATTCCTCTTTAGCTTGCACTCGTTTACCTACAAACCCTTCACTCACTCTCCCTTCAGCAGGGCTATTAGAGGAGATGAATTTTCCAGCTGTGGTGAATTCTCCAGCAGAGTTCAGGTGCGTGAGAGTTAGCTCAGTTGATGAGAACGAAGAGGAGTATGCATATTCAACAGCTGTAAACATTGGAGGGCATGTTTTTAGAGGAATTTTGTATGATTATGGTCCAGATCATGGGAATAATAGTTACAATATGGCTACCGGAAACGCCTCTAATTCTAGTGGTACACTCCTTGAAGGTGTGGCTCAGCCCTTAAACCTTATCTCTTCTGTCCCTGATGCTACTGCTGTTGGGGAAATTGTTGATCCTTCTTCTTTGTATCCAGCTCCACTTAATTCCTTCATGCCTTCTAGTGGTACGCAATTCTTCCCCCACCCAAGATCTTGA

Protein sequence

>MsaT025705.1

MAGLFSLGRTEEENQQNNNNPTTEFWYNKNDDSVVSNSYRGFEIWNQHQHQQHLFSLQQPQQQQQQQDLYSSGVVLGVGPTRVCSSDENRSTVFVGSGSGSGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQLSAPKSSQQHGERDLNNNNSSLACTRLPTNPSLTLPSAGLLEEMNFPAVVNSPAEFRCVRVSSVDENEEEYAYSTAVNIGGHVFRGILYDYGPDHGNNSYNMATGNASNSSGTLLEGVAQPLNLISSVPDATAVGEIVDPSSLYPAPLNSFMPSSGTQFFPHPRS*