AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG025716

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG025716 MtrunA17_Chr5g0404951 99.567 231 1 0 1 231 1 231 8.43e-174 476
MsaG025716 MtrunA17_Chr3g0142191 53.636 220 96 4 1 219 1 215 3.96e-75 227
MsaG025716 MtrunA17_Chr3g0125241 47.260 146 73 2 1 146 26 167 2.49e-40 137
MsaG025716 MtrunA17_Chr1g0159661 43.919 148 79 2 1 148 1 144 2.78e-35 123
MsaG025716 MtrunA17_Chr8g0351051 39.444 180 94 4 1 173 1 172 2.16e-32 118
MsaG025716 MtrunA17_Chr7g0220121 34.685 222 109 8 1 207 1 201 1.82e-31 115
MsaG025716 MtrunA17_Chr3g0097101 42.208 154 74 4 1 147 16 161 2.17e-29 110
MsaG025716 MtrunA17_Chr1g0164791 31.963 219 134 3 1 207 1 216 2.20e-29 109
MsaG025716 MtrunA17_Chr3g0077501 40.678 177 88 5 1 170 1 167 2.37e-29 109
MsaG025716 MtrunA17_Chr4g0061691 39.227 181 84 6 1 168 1 168 5.47e-29 108
MsaG025716 MtrunA17_Chr6g0474371 38.150 173 98 3 1 168 1 169 7.67e-29 107
MsaG025716 MtrunA17_Chr8g0380021 40.113 177 89 5 1 170 17 183 8.79e-29 108
MsaG025716 MtrunA17_Chr6g0455511 36.019 211 115 7 1 200 1 202 1.45e-28 108
MsaG025716 MtrunA17_Chr7g0220111 38.674 181 96 5 1 174 1 173 1.55e-28 108
MsaG025716 MtrunA17_Chr8g0366231 37.430 179 90 6 1 168 1 168 1.78e-28 107
MsaG025716 MtrunA17_Chr5g0420091 40.000 170 93 5 1 165 1 166 3.66e-28 106
MsaG025716 MtrunA17_Chr4g0057151 36.410 195 109 5 1 186 1 189 6.73e-28 105
MsaG025716 MtrunA17_Chr2g0284911 39.548 177 90 5 1 170 16 182 1.64e-27 105
MsaG025716 MtrunA17_Chr8g0351041 36.932 176 81 4 1 161 1 161 2.23e-27 102
MsaG025716 MtrunA17_Chr8g0351031 35.519 183 88 4 1 168 1 168 2.52e-27 104
MsaG025716 MtrunA17_Chr5g0420081 36.066 183 95 5 1 172 1 172 6.34e-27 103
MsaG025716 MtrunA17_Chr3g0122251 39.610 154 82 3 1 147 1 150 1.75e-26 102
MsaG025716 MtrunA17_Chr2g0279821 36.306 157 78 4 1 147 1 145 4.42e-26 101
MsaG025716 MtrunA17_Chr1g0204111 37.356 174 97 4 1 168 17 184 4.55e-26 101
MsaG025716 MtrunA17_Chr7g0246431 36.994 173 98 4 1 168 1 167 9.26e-26 99.8
MsaG025716 MtrunA17_Chr4g0049541 35.393 178 93 3 1 168 1 166 9.52e-26 100
MsaG025716 MtrunA17_Chr4g0018421 34.118 170 103 3 1 165 1 166 5.78e-23 92.4
MsaG025716 MtrunA17_Chr5g0411691 31.731 208 115 7 1 194 1 195 1.39e-22 92.0
MsaG025716 MtrunA17_Chr4g0061671 30.570 193 106 5 1 173 1 185 3.19e-22 90.1
MsaG025716 MtrunA17_Chr2g0308251 64.912 57 20 0 1 57 1 57 5.40e-22 86.3
MsaG025716 MtrunA17_Chr5g0412461 37.288 177 92 6 1 168 1 167 6.34e-22 90.1
MsaG025716 MtrunA17_Chr1g0173161 64.516 62 22 0 1 62 1 62 8.77e-22 85.9
MsaG025716 MtrunA17_Chr5g0427401 34.392 189 113 4 1 185 1 182 1.23e-21 89.4
MsaG025716 MtrunA17_Chr8g0377561 64.912 57 20 0 1 57 1 57 1.26e-21 85.9
MsaG025716 MtrunA17_Chr4g0020221 35.616 146 89 2 1 143 1 144 1.43e-21 89.7
MsaG025716 MtrunA17_Chr7g0246381 62.712 59 22 0 1 59 1 59 1.83e-21 84.7
MsaG025716 MtrunA17_Chr5g0412271 34.848 198 117 6 1 193 1 191 2.90e-21 88.6
MsaG025716 MtrunA17_Chr4g0044071 64.912 57 20 0 1 57 1 57 2.54e-20 82.8
MsaG025716 MtrunA17_Chr5g0425191 63.158 57 21 0 1 57 1 57 8.22e-20 81.3
MsaG025716 MtrunA17_Chr4g0049901 30.583 206 126 4 1 191 27 230 2.09e-19 83.6
MsaG025716 MtrunA17_Chr5g0427921 55.932 59 26 0 1 59 1 59 1.33e-18 76.6
MsaG025716 MtrunA17_Chr1g0169761 51.613 62 30 0 1 62 1 62 1.64e-18 80.1
MsaG025716 MtrunA17_Chr8g0376821 51.613 62 30 0 1 62 1 62 2.24e-18 79.7
MsaG025716 MtrunA17_Chr4g0074101 48.438 64 33 0 1 64 1 64 4.64e-18 79.3
MsaG025716 MtrunA17_Chr3g0134451 49.485 97 46 3 1 96 1 95 1.69e-17 79.7
MsaG025716 MtrunA17_Chr1g0180591 37.008 127 70 4 1 124 1 120 1.17e-16 75.1
MsaG025716 MtrunA17_Chr8g0356071 50.000 62 31 0 1 62 1 62 2.14e-16 73.9
MsaG025716 MtrunA17_Chr8g0357771 48.387 62 32 0 1 62 1 62 6.71e-16 73.2
MsaG025716 MtrunA17_Chr8g0379021 50.000 70 33 1 2 71 12 79 9.26e-16 72.4
MsaG025716 MtrunA17_Chr3g0099421 54.286 70 30 1 2 71 34 101 1.15e-15 73.9
MsaG025716 MtrunA17_Chr2g0333981 35.461 141 71 4 1 125 11 147 1.41e-15 72.0
MsaG025716 MtrunA17_Chr8g0355091 50.000 70 33 1 2 71 9 76 1.63e-15 73.2
MsaG025716 MtrunA17_Chr1g0206701 50.000 70 33 1 2 71 9 76 1.76e-15 73.2
MsaG025716 MtrunA17_Chr1g0149391 51.429 70 32 1 2 71 9 76 1.91e-15 72.8
MsaG025716 MtrunA17_Chr5g0419601 50.704 71 33 1 1 71 8 76 1.95e-15 72.8
MsaG025716 MtrunA17_Chr1g0206721 40.187 107 56 3 2 102 9 113 2.12e-15 72.8
MsaG025716 MtrunA17_Chr2g0292791 51.429 70 32 1 2 71 9 76 2.54e-15 72.8
MsaG025716 MtrunA17_Chr4g0052081 45.070 71 37 1 1 71 1 69 2.62e-15 71.2
MsaG025716 MtrunA17_Chr1g0208561 50.000 70 33 1 2 71 9 76 3.20e-15 72.0
MsaG025716 MtrunA17_Chr4g0052061 50.000 60 30 0 1 60 1 60 3.22e-15 70.5
MsaG025716 MtrunA17_Chr3g0089141 50.000 70 33 1 2 71 9 76 3.58e-15 72.0
MsaG025716 MtrunA17_Chr2g0317451 50.000 70 33 1 2 71 9 76 3.58e-15 72.0
MsaG025716 MtrunA17_Chr2g0317481 50.000 70 33 1 2 71 9 76 3.62e-15 72.0
MsaG025716 MtrunA17_Chr1g0166611 42.857 91 44 3 13 96 17 106 3.62e-15 70.1
MsaG025716 MtrunA17_Chr1g0187361 50.000 70 33 1 2 71 9 76 4.21e-15 72.0
MsaG025716 MtrunA17_Chr3g0099411 50.000 70 33 1 2 71 9 76 4.24e-15 71.6
MsaG025716 MtrunA17_Chr1g0175611 48.387 62 32 0 1 62 1 62 4.45e-15 70.5
MsaG025716 MtrunA17_Chr1g0188671 51.429 70 32 1 2 71 47 114 5.54e-15 72.4
MsaG025716 MtrunA17_Chr1g0206991 39.252 107 57 3 2 102 9 113 7.36e-15 70.1
MsaG025716 MtrunA17_Chr1g0208581 50.000 70 33 1 2 71 9 76 1.57e-14 70.1
MsaG025716 MtrunA17_Chr5g0422941 38.095 105 58 3 2 104 9 108 2.71e-14 69.7
MsaG025716 MtrunA17_Chr2g0325971 48.571 70 34 1 2 71 9 76 3.40e-14 69.3
MsaG025716 MtrunA17_Chr5g0422421 50.000 70 33 1 2 71 9 76 3.70e-14 69.3
MsaG025716 MtrunA17_Chr5g0417661 51.515 66 26 1 1 66 56 115 3.76e-14 67.0
MsaG025716 MtrunA17_Chr1g0175601 46.774 62 33 0 1 62 1 62 3.77e-14 68.2
MsaG025716 MtrunA17_Chr4g0060841 37.063 143 80 6 1 142 1 134 4.71e-14 70.5
MsaG025716 MtrunA17_Chr4g0018951 36.923 130 62 5 15 132 25 146 8.85e-14 67.0
MsaG025716 MtrunA17_Chr6g0457851 28.750 160 97 5 1 148 11 165 1.55e-13 68.9
MsaG025716 MtrunA17_Chr3g0089151 45.714 70 36 1 2 71 9 76 1.15e-12 63.2
MsaG025716 MtrunA17_Chr3g0119901 43.662 71 38 1 1 71 8 76 2.18e-12 63.9
MsaG025716 MtrunA17_Chr2g0300441 47.222 72 34 2 2 71 7 76 2.21e-12 64.3
MsaG025716 MtrunA17_Chr2g0300421 46.032 63 34 0 2 64 9 71 6.80e-12 62.0
MsaG025716 MtrunA17_Chr6g0449851 30.137 146 90 4 1 136 1 144 9.14e-12 63.5
MsaG025716 MtrunA17_Chr1g0206691 36.735 98 54 3 11 102 1 96 1.40e-11 62.0
MsaG025716 MtrunA17_Chr3g0111841 47.368 57 30 0 8 64 2 58 1.71e-11 58.2
MsaG025716 MtrunA17_Chr3g0085241 40.845 71 40 1 1 71 40 108 2.78e-11 61.6
MsaG025716 MtrunA17_Chr1g0187351 45.902 61 31 1 11 71 1 59 3.86e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG025716 AT3G54340.1 49.091 220 107 3 1 219 1 216 5.70e-66 204
MsaG025716 AT5G20240.2 43.972 141 75 2 1 141 1 137 8.80e-34 119
MsaG025716 AT5G20240.1 41.333 150 84 2 1 150 1 146 1.39e-33 120
MsaG025716 AT2G42830.2 39.548 177 92 4 1 170 16 184 3.47e-32 118
MsaG025716 AT4G11880.2 42.424 165 80 5 1 158 1 157 7.91e-32 115
MsaG025716 AT4G11880.3 42.424 165 80 5 1 158 1 157 7.91e-32 115
MsaG025716 AT4G11880.4 41.758 182 88 6 1 175 1 171 1.92e-30 112
MsaG025716 AT4G11880.1 41.758 182 88 6 1 175 1 171 1.92e-30 112
MsaG025716 AT2G45650.1 37.853 177 100 4 1 173 1 171 3.61e-30 112
MsaG025716 AT5G60910.1 41.040 173 94 4 1 169 1 169 4.26e-30 112
MsaG025716 AT2G42830.1 39.548 177 90 5 1 170 16 182 6.02e-30 112
MsaG025716 AT3G58780.5 39.548 177 90 5 1 170 22 188 1.26e-29 111
MsaG025716 AT3G58780.1 39.548 177 90 5 1 170 16 182 1.27e-29 111
MsaG025716 AT3G61120.1 38.636 176 99 4 1 173 1 170 3.87e-29 110
MsaG025716 AT4G22950.2 36.000 175 96 4 1 168 1 166 4.90e-29 107
MsaG025716 AT3G58780.4 43.046 151 71 4 1 144 16 158 7.11e-29 110
MsaG025716 AT5G51870.2 42.208 154 75 6 1 147 1 147 1.52e-28 106
MsaG025716 AT4G09960.1 37.838 185 82 6 1 170 1 167 1.61e-28 107
MsaG025716 AT5G51870.4 37.624 202 107 7 1 190 1 195 1.68e-28 107
MsaG025716 AT4G22950.3 36.000 175 96 4 1 168 1 166 1.73e-28 107
MsaG025716 AT4G22950.1 36.000 175 96 4 1 168 1 166 1.73e-28 107
MsaG025716 AT4G09960.6 37.838 185 82 6 1 170 2 168 1.74e-28 107
MsaG025716 AT5G51870.1 39.665 179 94 6 1 172 1 172 1.88e-28 107
MsaG025716 AT5G51870.3 37.255 204 109 7 1 192 11 207 1.91e-28 107
MsaG025716 AT4G09960.5 37.838 185 82 6 1 170 11 177 2.11e-28 107
MsaG025716 AT5G51870.5 42.208 154 75 6 1 147 24 170 2.70e-28 106
MsaG025716 AT1G24260.1 38.764 178 99 4 1 172 1 174 4.38e-28 107
MsaG025716 AT4G09960.3 37.838 185 82 6 1 170 27 193 4.77e-28 107
MsaG025716 AT5G15800.1 38.674 181 101 5 1 176 1 176 5.02e-28 107
MsaG025716 AT3G58780.2 38.983 177 84 5 1 170 16 175 5.09e-28 107
MsaG025716 AT1G24260.2 38.547 179 99 4 1 172 1 175 5.35e-28 107
MsaG025716 AT4G18960.1 41.463 164 79 5 2 157 18 172 6.01e-28 107
MsaG025716 AT5G15800.2 39.326 178 98 5 1 173 1 173 7.20e-28 107
MsaG025716 AT5G13790.2 40.000 175 86 3 1 168 1 163 1.01e-27 107
MsaG025716 AT4G09960.2 40.506 158 63 5 1 143 1 142 1.37e-27 105
MsaG025716 AT3G02310.2 44.138 145 71 5 1 140 1 140 2.38e-27 103
MsaG025716 AT5G13790.1 40.476 168 92 3 1 168 1 160 2.53e-27 105
MsaG025716 AT1G69120.2 35.754 179 93 5 1 168 1 168 2.57e-27 105
MsaG025716 AT1G69120.1 35.754 179 93 5 1 168 1 168 2.89e-27 105
MsaG025716 AT5G62165.17 37.195 164 90 4 1 158 1 157 2.98e-27 102
MsaG025716 AT5G62165.12 37.195 164 90 4 1 158 1 157 2.98e-27 102
MsaG025716 AT5G62165.11 37.195 164 90 4 1 158 1 157 2.98e-27 102
MsaG025716 AT5G62165.6 38.562 153 81 4 1 147 1 146 3.01e-27 102
MsaG025716 AT5G62165.9 38.562 153 81 4 1 147 1 146 3.01e-27 102
MsaG025716 AT5G62165.7 38.562 153 81 4 1 147 1 146 3.01e-27 102
MsaG025716 AT5G62165.8 38.562 153 81 4 1 147 1 146 3.01e-27 102
MsaG025716 AT5G62165.13 38.562 153 81 4 1 147 1 146 3.01e-27 102
MsaG025716 AT4G09960.4 36.898 187 85 6 1 170 96 266 3.52e-27 106
MsaG025716 AT3G02310.1 44.138 145 71 5 1 140 1 140 4.79e-27 104
MsaG025716 AT5G62165.3 36.216 185 102 5 1 179 1 175 7.00e-27 103
MsaG025716 AT5G62165.1 36.216 185 102 5 1 179 1 175 7.00e-27 103
MsaG025716 AT5G62165.2 36.216 185 102 5 1 179 1 175 7.00e-27 103
MsaG025716 AT2G45660.2 39.024 164 89 4 1 159 1 158 8.27e-27 101
MsaG025716 AT2G03710.1 36.364 176 106 3 1 173 1 173 8.89e-27 103
MsaG025716 AT2G03710.2 36.364 176 106 3 1 173 1 173 9.18e-27 103
MsaG025716 AT1G24260.3 38.012 171 95 4 1 164 1 167 1.53e-26 102
MsaG025716 AT2G03710.3 39.726 146 82 3 1 143 1 143 1.69e-26 101
MsaG025716 AT2G45660.1 38.150 173 96 4 1 168 1 167 2.10e-26 102
MsaG025716 AT3G58780.3 35.500 200 91 5 1 170 16 207 2.77e-26 103
MsaG025716 AT3G30260.1 40.789 152 80 5 1 147 1 147 3.84e-26 102
MsaG025716 AT1G26310.1 35.359 181 93 5 1 168 1 170 4.13e-26 102
MsaG025716 AT5G23260.2 39.080 174 92 4 1 168 1 166 5.49e-26 102
MsaG025716 AT5G23260.4 39.080 174 92 4 1 168 17 182 7.87e-26 101
MsaG025716 AT4G37940.4 35.955 178 92 5 1 168 1 166 2.34e-25 99.4
MsaG025716 AT5G62165.10 38.926 149 78 4 1 143 1 142 9.30e-25 97.4
MsaG025716 AT5G62165.4 38.926 149 78 4 1 143 1 142 9.30e-25 97.4
MsaG025716 AT3G57230.1 32.773 238 123 10 1 217 1 222 1.43e-24 97.8
MsaG025716 AT3G57230.4 32.773 238 123 10 1 217 1 222 1.43e-24 97.8
MsaG025716 AT3G57230.2 36.306 157 78 5 1 147 1 145 1.89e-24 95.1
MsaG025716 AT3G57390.3 36.747 166 89 4 1 155 1 161 2.29e-24 97.1
MsaG025716 AT4G37940.3 37.908 153 73 5 1 143 1 141 2.57e-24 95.5
MsaG025716 AT3G57390.1 36.747 166 89 4 1 155 1 161 4.30e-24 97.1
MsaG025716 AT4G37940.1 34.831 178 94 5 1 168 1 166 7.81e-24 95.5
MsaG025716 AT5G23260.1 39.080 174 87 5 1 168 17 177 1.40e-23 95.9
MsaG025716 AT5G62165.14 55.844 77 32 1 1 77 1 75 2.87e-23 90.9
MsaG025716 AT5G23260.3 41.611 149 73 4 1 143 1 141 1.11e-22 92.8
MsaG025716 AT5G65070.4 37.086 151 85 5 1 150 1 142 1.14e-22 90.5
MsaG025716 AT2G22540.3 37.349 166 85 6 1 157 1 156 1.75e-22 92.4
MsaG025716 AT2G22540.1 37.349 166 85 6 1 157 1 156 1.75e-22 92.4
MsaG025716 AT5G51860.1 36.196 163 100 3 1 161 1 161 3.89e-22 90.9
MsaG025716 AT5G51860.2 35.057 174 109 3 1 172 1 172 4.11e-22 90.5
MsaG025716 AT4G24540.1 37.640 178 100 5 1 173 1 172 6.56e-22 90.5
MsaG025716 AT5G65070.1 35.503 169 99 5 1 168 1 160 1.06e-21 89.4
MsaG025716 AT2G22630.1 32.903 155 86 3 1 147 1 145 1.49e-21 89.7
MsaG025716 AT2G22630.2 32.903 155 86 3 1 147 1 145 1.49e-21 89.7
MsaG025716 AT2G14210.2 35.948 153 77 4 1 143 1 142 7.70e-21 87.8
MsaG025716 AT2G14210.1 35.948 153 77 4 1 143 1 142 7.80e-21 87.8
MsaG025716 AT1G71692.1 53.947 76 34 1 1 76 1 75 1.36e-20 86.7
MsaG025716 AT5G10140.2 37.013 154 67 5 1 143 1 135 2.42e-20 84.7
MsaG025716 AT5G10140.4 34.320 169 81 5 1 158 1 150 2.58e-20 85.1
MsaG025716 AT2G22540.2 36.747 166 81 6 1 157 1 151 3.65e-20 85.9
MsaG025716 AT5G10140.3 37.013 154 67 5 1 143 1 135 4.87e-20 84.7
MsaG025716 AT5G10140.1 36.076 158 71 5 1 147 1 139 4.91e-20 84.7
MsaG025716 AT5G65050.2 31.148 183 110 5 1 179 1 171 2.54e-19 82.4
MsaG025716 AT5G65050.1 33.333 165 88 5 1 158 1 150 4.36e-19 82.0
MsaG025716 AT5G65060.3 33.766 154 80 5 1 147 1 139 5.69e-19 82.0
MsaG025716 AT5G65080.3 31.319 182 110 5 1 180 8 176 6.72e-19 81.6
MsaG025716 AT5G65060.1 33.117 154 81 5 1 147 1 139 7.23e-19 81.6
MsaG025716 AT5G65050.3 32.571 175 96 5 1 168 1 160 1.39e-18 80.9
MsaG025716 AT1G22130.1 66.667 54 18 0 1 54 1 54 3.42e-18 82.4
MsaG025716 AT5G65070.3 30.412 194 107 6 1 168 1 192 6.80e-18 79.7
MsaG025716 AT1G77980.1 64.815 54 19 0 1 54 1 54 8.39e-18 81.3
MsaG025716 AT5G65070.5 32.432 185 94 6 1 158 1 181 1.31e-17 78.6
MsaG025716 AT5G65050.5 32.941 170 91 5 1 168 1 149 1.49e-17 77.8
MsaG025716 AT5G65070.2 31.795 195 102 6 1 168 1 191 1.72e-17 79.0
MsaG025716 AT5G65060.2 33.557 149 76 5 1 147 1 128 1.93e-17 77.8
MsaG025716 AT1G77080.5 34.104 173 104 5 1 172 1 164 4.15e-17 76.6
MsaG025716 AT1G77080.11 34.320 169 101 5 1 168 1 160 4.86e-17 76.3
MsaG025716 AT1G77080.4 34.337 166 99 5 1 165 1 157 8.16e-17 76.3
MsaG025716 AT5G65080.2 31.818 154 82 3 1 147 8 145 4.97e-16 74.3
MsaG025716 AT2G34440.1 39.241 79 46 1 1 79 1 77 6.33e-15 70.5
MsaG025716 AT1G47760.1 28.671 143 94 3 1 142 1 136 9.25e-15 70.5
MsaG025716 AT1G77080.8 30.645 186 106 4 1 165 1 184 1.05e-14 70.9
MsaG025716 AT2G03060.2 37.097 124 73 4 1 123 1 120 1.49e-14 72.4
MsaG025716 AT2G03060.3 37.097 124 73 4 1 123 1 120 1.67e-14 72.0
MsaG025716 AT2G03060.7 37.097 124 73 4 1 123 1 120 1.67e-14 72.0
MsaG025716 AT2G03060.1 37.097 124 73 4 1 123 1 120 1.67e-14 72.0
MsaG025716 AT1G77950.3 55.556 54 24 0 1 54 1 54 1.81e-14 70.9
MsaG025716 AT1G77950.2 55.556 54 24 0 1 54 1 54 1.81e-14 70.9
MsaG025716 AT1G77950.1 55.556 54 24 0 1 54 1 54 1.81e-14 70.9
MsaG025716 AT1G77950.4 55.556 54 24 0 1 54 1 54 1.81e-14 70.9
MsaG025716 AT1G31140.2 34.000 150 87 3 1 143 1 145 2.33e-14 70.1
MsaG025716 AT1G77080.12 31.875 160 95 5 1 159 1 147 2.89e-14 68.2
MsaG025716 AT1G72350.1 50.000 70 31 1 2 71 43 108 5.05e-14 69.3
MsaG025716 AT1G18750.1 38.235 102 58 1 1 102 1 97 6.94e-14 70.5
MsaG025716 AT1G18750.4 38.235 102 58 1 1 102 1 97 7.28e-14 70.5
MsaG025716 AT1G31140.1 43.836 73 41 0 1 73 1 73 7.46e-14 68.6
MsaG025716 AT1G18750.3 38.235 102 58 1 1 102 1 97 8.05e-14 70.5
MsaG025716 AT1G77080.2 31.325 166 100 5 1 165 1 153 1.98e-13 67.0
MsaG025716 AT3G66656.1 45.161 62 34 0 1 62 1 62 2.73e-13 66.2
MsaG025716 AT3G04100.1 36.559 93 57 1 2 94 14 104 4.59e-13 66.2
MsaG025716 AT1G01530.1 44.928 69 36 1 1 69 6 72 5.11e-13 66.6
MsaG025716 AT5G60440.1 44.286 70 37 1 2 71 7 74 2.90e-12 65.1
MsaG025716 AT1G69540.1 58.491 53 22 0 1 53 1 53 5.79e-12 64.7
MsaG025716 AT1G69540.2 58.491 53 22 0 1 53 1 53 6.02e-12 64.7
MsaG025716 AT1G65360.1 45.161 62 34 0 1 62 6 67 7.51e-12 63.2
MsaG025716 AT4G37435.1 47.368 57 30 0 1 57 1 57 8.87e-12 62.4
MsaG025716 AT4G36590.1 50.820 61 30 0 2 62 7 67 2.95e-11 62.0
MsaG025716 AT2G24840.1 42.254 71 39 1 1 71 62 130 4.83e-11 61.2

Find 46 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAATATCAAAAGACTTT+GGG 0.287738 5:+11766083 MsaT025716.1:CDS
TGATCTGTCTTCTAAGCTTA+TGG 0.298341 5:-11766255 None:intergenic
TGATCAATATCAAAAGACTT+TGG 0.352452 5:+11766082 MsaT025716.1:CDS
AGGTGAGGGTGGTATGGAAT+TGG 0.393769 5:+11766402 MsaT025716.1:CDS
GACTGATACCTGTAGGAAAA+AGG 0.396405 5:+11767175 MsaT025716.1:CDS
TGATTGAGAATCCTACTAAC+AGG 0.439798 5:+11765802 MsaT025716.1:CDS
TAGTGTTCTATGTGATGCTA+AGG 0.480298 5:+11765878 MsaT025716.1:CDS
TAATATGCAGGTTAGAAGCT+TGG 0.482048 5:+11767289 MsaT025716.1:intron
TATGTCACTTGCCTGTTAGT+AGG 0.489132 5:-11765813 None:intergenic
TAGAATAGGTGAGGGTGGTA+TGG 0.489353 5:+11766396 MsaT025716.1:CDS
CCTCATCACCACGGAGAAGA+AGG 0.492013 5:+11767764 MsaT025716.1:CDS
GATAGTACTTACGTTAGTCC+AGG 0.515987 5:-11765951 None:intergenic
CGAGGAATCAGCAGTTGCAT+TGG 0.519957 5:+11767685 MsaT025716.1:CDS
ATCAATATCAAAAGACTTTG+GGG 0.524360 5:+11766084 MsaT025716.1:CDS
GAATTGAAAAGGCATAGAAT+AGG 0.545034 5:+11766382 MsaT025716.1:intron
ATACAGAGTGGAAGCACCAT+TGG 0.546264 5:-11767708 None:intergenic
AGAAGCTTGGAGCAGATGAA+TGG 0.546698 5:+11767302 MsaT025716.1:CDS
CCTTCTTCTCCGTGGTGATG+AGG 0.550144 5:-11767764 None:intergenic
TGCTAAAATACGTGAAAGGA+AGG 0.557946 5:+11766480 MsaT025716.1:CDS
ACATACTCAAAGAGAAGGAA+TGG 0.562851 5:+11765831 MsaT025716.1:CDS
ATAGTACTTACGTTAGTCCA+GGG 0.566211 5:-11765950 None:intergenic
AGATCATTGAAAATGGGTCG+TGG 0.568091 5:+11765762 None:intergenic
CGTGGAAAAGAAATTGTGGA+TGG 0.571656 5:-11767652 None:intergenic
ATGCATGAATACATCACCCC+TGG 0.577047 5:+11765933 MsaT025716.1:CDS
ATAAGCTTAGAAGACAGATC+AGG 0.577785 5:+11766257 MsaT025716.1:CDS
TTTCCACGACGAAGGAGACG+AGG 0.578253 5:+11767667 MsaT025716.1:CDS
TCAGCAGTTGCATTGGCCAA+TGG 0.579080 5:+11767692 MsaT025716.1:CDS
TCGTCGTGGAAAAGAAATTG+TGG 0.590379 5:-11767656 None:intergenic
TACGCAGTTGCTGAAAGCTA+AGG 0.590906 5:-11766429 None:intergenic
AGGCATAGAATAGGTGAGGG+TGG 0.593443 5:+11766391 MsaT025716.1:intron
AAGTGACATACTCAAAGAGA+AGG 0.595618 5:+11765826 MsaT025716.1:CDS
GAAAAGGCATAGAATAGGTG+AGG 0.603052 5:+11766387 MsaT025716.1:intron
GATCATTGAAAATGGGTCGT+GGG 0.604178 5:+11765763 None:intergenic
GCAACTGCGTAGTCTAGAAG+AGG 0.607072 5:+11766441 MsaT025716.1:CDS
AAACTCGGACTGATACCTGT+AGG 0.623665 5:+11767168 MsaT025716.1:CDS
GAGGAAGATTCAGATGAGAA+TGG 0.625361 5:-11767745 None:intergenic
TTAATTCAGCTGTTCAACCA+AGG 0.641575 5:-11767808 None:intergenic
ATTCCTCGTCTCCTTCGTCG+TGG 0.643427 5:-11767670 None:intergenic
TCTGTGGCGTTCTCACTATG+AGG 0.645842 5:+11766115 MsaT025716.1:CDS
AGTTTCATGTGATCAAAACT+CGG 0.647118 5:+11767153 MsaT025716.1:intron
CCATTGCTAAAATACGTGAA+AGG 0.651424 5:+11766476 MsaT025716.1:CDS
AAAAGGCATAGAATAGGTGA+GGG 0.655347 5:+11766388 MsaT025716.1:intron
TCAATATCAAAAGACTTTGG+GGG 0.679539 5:+11766085 MsaT025716.1:CDS
CTGACAGAATGCATACAGAG+TGG 0.686982 5:-11767720 None:intergenic
CTGAATCTTCCTCATCACCA+CGG 0.690792 5:+11767755 MsaT025716.1:CDS
TAGTACTTACGTTAGTCCAG+GGG 0.693878 5:-11765949 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 11765774 11767817 11765774 ID=MsaG025716
Chr5 mRNA 11765774 11767817 11765774 ID=MsaT025716.1;Parent=MsaG025716
Chr5 exon 11765774 11765961 11765774 ID=MsaT025716.1.exon1;Parent=MsaT025716.1
Chr5 CDS 11765774 11765961 11765774 ID=cds.MsaT025716.1;Parent=MsaT025716.1
Chr5 exon 11766067 11766136 11766067 ID=MsaT025716.1.exon2;Parent=MsaT025716.1
Chr5 CDS 11766067 11766136 11766067 ID=cds.MsaT025716.1;Parent=MsaT025716.1
Chr5 exon 11766217 11766278 11766217 ID=MsaT025716.1.exon3;Parent=MsaT025716.1
Chr5 CDS 11766217 11766278 11766217 ID=cds.MsaT025716.1;Parent=MsaT025716.1
Chr5 exon 11766393 11766501 11766393 ID=MsaT025716.1.exon4;Parent=MsaT025716.1
Chr5 CDS 11766393 11766501 11766393 ID=cds.MsaT025716.1;Parent=MsaT025716.1
Chr5 exon 11767155 11767196 11767155 ID=MsaT025716.1.exon5;Parent=MsaT025716.1
Chr5 CDS 11767155 11767196 11767155 ID=cds.MsaT025716.1;Parent=MsaT025716.1
Chr5 exon 11767299 11767343 11767299 ID=MsaT025716.1.exon6;Parent=MsaT025716.1
Chr5 CDS 11767299 11767343 11767299 ID=cds.MsaT025716.1;Parent=MsaT025716.1
Chr5 exon 11767638 11767817 11767638 ID=MsaT025716.1.exon7;Parent=MsaT025716.1
Chr5 CDS 11767638 11767817 11767638 ID=cds.MsaT025716.1;Parent=MsaT025716.1
Gene Sequence

>MsaT025716.1

ATGGGTCGTGGGAAGATTGAGATAAAGTTGATTGAGAATCCTACTAACAGGCAAGTGACATACTCAAAGAGAAGGAATGGTATATTCAAGAAAGCACATGAACTTAGTGTTCTATGTGATGCTAAGGTTTCACTCATCATGTTCTCCAAAAATAACAAGATGCATGAATACATCACCCCTGGACTAACTACAAAGAAGATTATTGATCAATATCAAAAGACTTTGGGGGATATAGATCTGTGGCGTTCTCACTATGAGAAAATGCTTGAAAACTTGAAGAAACTGAAAGATATTAACCATAAGCTTAGAAGACAGATCAGGCATAGAATAGGTGAGGGTGGTATGGAATTGGATGACCTTAGCTTTCAGCAACTGCGTAGTCTAGAAGAGGATATGAATTCCTCCATTGCTAAAATACGTGAAAGGAAGTTTCATGTGATCAAAACTCGGACTGATACCTGTAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAATGGAAATCTCTTGCTTGAACTTGAAAAGTGTGTGATCCATCCACAATTTCTTTTCCACGACGAAGGAGACGAGGAATCAGCAGTTGCATTGGCCAATGGTGCTTCCACTCTGTATGCATTCTGTCAGCACCATTCTCATCTGAATCTTCCTCATCACCACGGAGAAGAAGGTTACAAAAATGACGATTTGCGCCTTGGTTGA
Protein sequence

>MsaT025716.1

MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLTTKKIIDQYQKTLGDIDLWRSHYEKMLENLKKLKDINHKLRRQIRHRIGEGGMELDDLSFQQLRSLEEDMNSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELEKCVIHPQFLFHDEGDEESAVALANGASTLYAFCQHHSHLNLPHHHGEEGYKNDDLRLG*