AlfalfaGEDB | MsaG025726

M. sativa ssp. caerulea / MsaG025726

KEGG: -
GO: -
PFAM: PF00643.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025726	XP_013453547.1	100.000	190	0	0	1	190	1	190	3.45e-139	399

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025726	sp\|C0SVM5\|BBX19_ARATH	60.870	184	44	3	1	184	1	156	5.67e-73	223

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025726	tr\|A0A072UCQ4\|A0A072UCQ4_MEDTR	100.000	190	0	0	1	190	1	190	1.65e-139	399

TFs/TRs:

Gene ID	Type	Classification
MsaG025726	TF	DBB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000113	MsaG025726	0.836047	2.148610e-56	7.426397e-54
MsaG000213	MsaG025726	0.856104	7.815697e-62	5.255799e-59
MsaG000151	MsaG025726	0.835606	2.776188e-56	9.469505e-54
MsaG000491	MsaG025726	0.800856	1.982556e-48	2.732808e-46
MsaG000671	MsaG025726	0.812442	7.272208e-51	1.318537e-48
MsaG000730	MsaG025726	0.807106	1.008934e-49	1.607161e-47
MsaG000733	MsaG025726	0.807469	8.458077e-50	1.359016e-47
MsaG000858	MsaG025726	0.831759	2.511859e-55	7.648557e-53
MsaG000932	MsaG025726	0.829537	8.742542e-55	2.496832e-52
MsaG001030	MsaG025726	0.806892	1.119280e-49	1.773953e-47
MsaG001004	MsaG025726	0.870095	3.843040e-66	4.471609e-63
MsaG001323	MsaG025726	0.839083	3.608363e-57	1.368826e-54
MsaG002140	MsaG025726	0.800277	2.598479e-48	3.535255e-46
MsaG002526	MsaG025726	0.866345	6.124273e-65	6.105975e-62
MsaG002815	MsaG025726	0.802039	1.137460e-48	1.610527e-46
MsaG003072	MsaG025726	0.827752	2.349481e-54	6.380488e-52
MsaG003086	MsaG025726	0.813511	4.252585e-51	7.918861e-49
MsaG003088	MsaG025726	0.801926	1.199752e-48	1.694387e-46
MsaG003090	MsaG025726	0.813496	4.284325e-51	7.974676e-49
MsaG003311	MsaG025726	0.809614	2.961326e-50	5.010283e-48
MsaG003589	MsaG025726	0.846970	2.930553e-59	1.433604e-56
MsaG003631	MsaG025726	0.832497	1.653545e-55	5.143777e-53
MsaG003658	MsaG025726	0.811960	9.258122e-51	1.658684e-48
MsaG003778	MsaG025726	0.806975	1.075277e-49	1.707529e-47
MsaG003828	MsaG025726	0.814776	2.242275e-51	4.310151e-49
MsaG003859	MsaG025726	0.844487	1.372615e-58	6.184049e-56
MsaG003915	MsaG025726	0.802127	1.091423e-48	1.548410e-46
MsaG003972	MsaG025726	0.816624	8.726917e-52	1.758024e-49
MsaG003975	MsaG025726	0.828405	1.639013e-54	4.533425e-52
MsaG004116	MsaG025726	0.825652	7.411753e-54	1.898216e-51
MsaG004152	MsaG025726	0.804362	3.779567e-49	5.646013e-47
MsaG004303	MsaG025726	0.820804	9.916944e-53	2.227934e-50
MsaG004426	MsaG025726	0.818318	3.639983e-52	7.659872e-50
MsaG004391	MsaG025726	0.832757	1.426137e-55	4.470097e-53
MsaG004463	MsaG025726	0.804237	4.012150e-49	5.976106e-47
MsaG004486	MsaG025726	0.812256	7.984483e-51	1.440918e-48
MsaG004591	MsaG025726	0.822276	4.549364e-53	1.062860e-50
MsaG004923	MsaG025726	0.823763	2.055815e-53	5.000268e-51
MsaG004972	MsaG025726	0.826706	4.170858e-54	1.100025e-51
MsaG005539	MsaG025726	0.817323	6.090257e-52	1.249216e-49
MsaG005528	MsaG025726	0.829439	9.232086e-55	2.629239e-52
MsaG005875	MsaG025726	0.835503	2.948047e-56	1.002471e-53
MsaG006160	MsaG025726	0.872185	7.911436e-67	1.006257e-63
MsaG006174	MsaG025726	0.843586	2.387671e-58	1.044702e-55
MsaG006233	MsaG025726	0.820483	1.174490e-52	2.616363e-50
MsaG006250	MsaG025726	0.800048	2.890500e-48	3.912394e-46
MsaG006480	MsaG025726	0.813031	5.413399e-51	9.960118e-49
MsaG006669	MsaG025726	0.831126	3.590904e-55	1.073314e-52
MsaG006679	MsaG025726	0.817110	6.794373e-52	1.386058e-49
MsaG006681	MsaG025726	0.860286	4.513876e-63	3.548922e-60
MsaG006752	MsaG025726	0.821237	7.890291e-53	1.793134e-50
MsaG006857	MsaG025726	0.853906	3.377150e-61	2.098164e-58
MsaG006841	MsaG025726	0.820048	1.476133e-52	3.250718e-50
MsaG006893	MsaG025726	0.835244	3.424678e-56	1.155462e-53
MsaG006891	MsaG025726	0.856770	4.994040e-62	3.440958e-59
MsaG006944	MsaG025726	0.808785	4.449635e-50	7.379456e-48
MsaG006962	MsaG025726	0.817177	6.563984e-52	1.341361e-49
MsaG007581	MsaG025726	0.818359	3.562077e-52	7.504070e-50
MsaG007647	MsaG025726	0.827853	2.221992e-54	6.051405e-52
MsaG007847	MsaG025726	0.823239	2.721644e-53	6.526170e-51
MsaG007850	MsaG025726	0.814660	2.377827e-51	4.557200e-49
MsaG008288	MsaG025726	0.847055	2.778665e-59	1.363178e-56
MsaG008299	MsaG025726	0.801592	1.403527e-48	1.967164e-46
MsaG008428	MsaG025726	0.844460	1.395758e-58	6.282769e-56
MsaG008704	MsaG025726	0.853369	4.809324e-61	2.931585e-58
MsaG009654	MsaG025726	0.835743	2.563780e-56	8.780810e-54
MsaG009848	MsaG025726	0.801810	1.267011e-48	1.784663e-46
MsaG010051	MsaG025726	0.804410	3.694432e-49	5.524869e-47
MsaG010090	MsaG025726	0.880706	9.315146e-70	1.737850e-66
MsaG010243	MsaG025726	0.822322	4.440538e-53	1.038738e-50
MsaG010245	MsaG025726	0.837715	8.101709e-57	2.945396e-54
MsaG010572	MsaG025726	0.861335	2.176396e-63	1.780385e-60
MsaG010898	MsaG025726	0.816776	8.069287e-52	1.631978e-49
MsaG011000	MsaG025726	0.800609	2.225570e-48	3.050831e-46
MsaG011174	MsaG025726	0.800904	1.938589e-48	2.675056e-46
MsaG011242	MsaG025726	0.835398	3.131673e-56	1.061549e-53
MsaG011386	MsaG025726	0.802902	7.567485e-49	1.092856e-46
MsaG011508	MsaG025726	0.813605	4.054353e-51	7.567560e-49
MsaG011819	MsaG025726	0.848951	8.376741e-60	4.380674e-57
MsaG011881	MsaG025726	0.806963	1.081349e-49	1.716702e-47
MsaG011884	MsaG025726	0.824653	1.273069e-53	3.172093e-51
MsaG011983	MsaG025726	0.807383	8.820305e-50	1.414297e-47
MsaG012594	MsaG025726	0.800290	2.581814e-48	3.513642e-46
MsaG012575	MsaG025726	0.857373	3.322935e-62	2.340943e-59
MsaG012576	MsaG025726	0.829206	1.051110e-54	2.973320e-52
MsaG013295	MsaG025726	0.806457	1.381481e-49	2.167314e-47
MsaG013578	MsaG025726	0.817094	6.851357e-52	1.397095e-49
MsaG013846	MsaG025726	0.801516	1.454530e-48	2.035149e-46
MsaG013867	MsaG025726	0.867498	2.638933e-65	2.757381e-62
MsaG013878	MsaG025726	0.801081	1.784018e-48	2.471629e-46
MsaG014137	MsaG025726	0.812388	7.471801e-51	1.352914e-48
MsaG014366	MsaG025726	0.803796	4.950808e-49	7.299070e-47
MsaG014555	MsaG025726	0.863839	3.718031e-64	3.353959e-61
MsaG015134	MsaG025726	0.803121	6.821991e-49	9.902028e-47
MsaG015145	MsaG025726	0.853566	4.223272e-61	2.592220e-58
MsaG015317	MsaG025726	0.810914	1.557625e-50	2.719920e-48
MsaG016247	MsaG025726	0.820379	1.240272e-52	2.755369e-50
MsaG016370	MsaG025726	0.816683	8.464182e-52	1.707717e-49
MsaG016655	MsaG025726	0.844681	1.217568e-58	5.520997e-56
MsaG016796	MsaG025726	0.838533	5.001032e-57	1.864801e-54
MsaG017082	MsaG025726	0.801858	1.238921e-48	1.747008e-46
MsaG017087	MsaG025726	0.815333	1.688552e-51	3.291762e-49
MsaG017114	MsaG025726	0.811421	1.210714e-50	2.140610e-48
MsaG017348	MsaG025726	0.810529	1.885424e-50	3.261659e-48
MsaG017486	MsaG025726	0.817843	4.654553e-52	9.675947e-50
MsaG017500	MsaG025726	0.803971	4.554723e-49	6.742470e-47
MsaG017667	MsaG025726	0.801537	1.440624e-48	2.016631e-46
MsaG017733	MsaG025726	0.837979	6.935496e-57	2.542010e-54
MsaG018083	MsaG025726	0.816759	8.141484e-52	1.645855e-49
MsaG018483	MsaG025726	0.828277	1.758424e-54	4.846155e-52
MsaG018689	MsaG025726	0.818723	2.949274e-52	6.272056e-50
MsaG018781	MsaG025726	0.836228	1.934759e-56	6.723898e-54
MsaG018881	MsaG025726	0.830756	4.419936e-55	1.307109e-52
MsaG019578	MsaG025726	0.814498	2.582132e-51	4.928604e-49
MsaG020162	MsaG025726	0.816163	1.105356e-51	2.200727e-49
MsaG020287	MsaG025726	0.834684	4.732433e-56	1.570334e-53
MsaG020532	MsaG025726	0.808971	4.062999e-50	6.768346e-48
MsaG020643	MsaG025726	0.823730	2.092201e-53	5.084101e-51
MsaG020648	MsaG025726	0.825757	6.998366e-54	1.797623e-51
MsaG020754	MsaG025726	0.811036	1.466116e-50	2.567846e-48
MsaG020889	MsaG025726	0.810311	2.099739e-50	3.613091e-48
MsaG020952	MsaG025726	0.819696	1.774657e-52	3.871688e-50
MsaG021301	MsaG025726	0.807426	8.640019e-50	1.386793e-47
MsaG021565	MsaG025726	0.805490	2.201702e-49	3.376067e-47
MsaG021689	MsaG025726	0.842703	4.094981e-58	1.741745e-55
MsaG022193	MsaG025726	0.853167	5.489860e-61	3.322537e-58
MsaG022939	MsaG025726	0.823026	3.050190e-53	7.271951e-51
MsaG023590	MsaG025726	0.806522	1.339146e-49	2.104028e-47
MsaG023664	MsaG025726	0.801396	1.539389e-48	2.148006e-46
MsaG023698	MsaG025726	0.805070	2.693202e-49	4.089768e-47
MsaG023764	MsaG025726	0.853281	5.094541e-61	3.095749e-58
MsaG023812	MsaG025726	0.800357	2.503130e-48	3.411810e-46
MsaG023967	MsaG025726	0.822824	3.397988e-53	8.057077e-51
MsaG023939	MsaG025726	0.852601	7.957292e-61	4.720639e-58
MsaG023981	MsaG025726	0.804076	4.332769e-49	6.429783e-47
MsaG024262	MsaG025726	0.814529	2.541536e-51	4.854935e-49
MsaG024283	MsaG025726	0.804162	4.157717e-49	6.182189e-47
MsaG024303	MsaG025726	0.809181	3.665287e-50	6.136659e-48
MsaG024365	MsaG025726	0.826951	3.648018e-54	9.687100e-52
MsaG024483	MsaG025726	0.803542	5.584616e-49	8.185501e-47
MsaG024573	MsaG025726	0.867969	1.865546e-65	1.987292e-62
MsaG024623	MsaG025726	0.833929	7.304486e-56	2.369594e-53
MsaG024665	MsaG025726	0.819239	2.253682e-52	4.858261e-50
MsaG024908	MsaG025726	0.821807	5.837798e-53	1.346824e-50
MsaG025502	MsaG025726	0.811863	9.717221e-51	1.736794e-48
MsaG025726	MsaG026021	0.805645	2.043804e-49	3.145387e-47
MsaG025726	MsaG026584	0.801616	1.387681e-48	1.946043e-46
MsaG025726	MsaG026641	0.803033	7.111056e-49	1.030068e-46
MsaG025726	MsaG026933	0.826065	5.919103e-54	1.533534e-51
MsaG025726	MsaG027149	0.809849	2.638077e-50	4.488735e-48
MsaG025726	MsaG027648	0.831834	2.407996e-55	7.348091e-53
MsaG025726	MsaG027898	0.823117	2.906318e-53	6.945774e-51
MsaG025726	MsaG028435	0.821188	8.100823e-53	1.838605e-50
MsaG025726	MsaG028513	0.826305	5.194530e-54	1.354756e-51
MsaG025726	MsaG028590	0.839706	2.491618e-57	9.637370e-55
MsaG025726	MsaG028683	0.879768	2.005428e-69	3.580944e-66
MsaG025726	MsaG028881	0.830242	5.895744e-55	1.718136e-52
MsaG025726	MsaG029058	0.851819	1.324605e-60	7.645786e-58
MsaG025726	MsaG029231	0.861733	1.646567e-63	1.367666e-60
MsaG025726	MsaG029370	0.860400	4.172220e-63	3.294402e-60
MsaG025726	MsaG029381	0.837027	1.212828e-56	4.317753e-54
MsaG025726	MsaG029846	0.832634	1.529644e-55	4.777207e-53
MsaG025726	MsaG029852	0.841187	1.025605e-57	4.156260e-55
MsaG025726	MsaG030011	0.801387	1.545359e-48	2.155938e-46
MsaG025726	MsaG030160	0.802119	1.095405e-48	1.553784e-46
MsaG025726	MsaG030479	0.829255	1.022663e-54	2.896900e-52
MsaG025726	MsaG030474	0.823678	2.151675e-53	5.221341e-51
MsaG025726	MsaG030719	0.804592	3.386025e-49	5.084959e-47
MsaG025726	MsaG031195	0.816803	7.960300e-52	1.611031e-49
MsaG025726	MsaG031686	0.825781	6.910370e-54	1.776205e-51
MsaG025726	MsaG032509	0.824395	1.462710e-53	3.619252e-51
MsaG025726	MsaG032765	0.809643	2.919962e-50	4.943666e-48
MsaG025726	MsaG033310	0.807132	9.964058e-50	1.588175e-47
MsaG025726	MsaG033805	0.817318	6.105809e-52	1.252241e-49
MsaG025726	MsaG034380	0.834969	4.012986e-56	1.342951e-53
MsaG025726	MsaG034676	0.818268	3.734798e-52	7.849371e-50
MsaG025726	MsaG034716	0.813505	4.263752e-51	7.938407e-49
MsaG025726	MsaG034745	0.804441	3.639890e-49	5.447129e-47
MsaG025726	MsaG035393	0.869234	7.315499e-66	8.209908e-63
MsaG025726	MsaG035405	0.801824	1.258595e-48	1.773394e-46
MsaG025726	MsaG035414	0.831655	2.664357e-55	8.088050e-53
MsaG025726	MsaG035534	0.815060	1.941045e-51	3.757814e-49
MsaG025726	MsaG035551	0.800791	2.043211e-48	2.812431e-46
MsaG025726	MsaG035659	0.807539	8.176861e-50	1.316003e-47
MsaG025726	MsaG036055	0.831668	2.645046e-55	8.032526e-53
MsaG025726	MsaG036061	0.801372	1.556435e-48	2.170637e-46
MsaG025726	MsaG038007	0.816279	1.041292e-51	2.079350e-49
MsaG025726	MsaG038354	0.833074	1.190777e-55	3.767171e-53
MsaG025726	MsaG038751	0.841592	8.031427e-58	3.296719e-55
MsaG025726	MsaG039347	0.813997	3.326049e-51	6.269493e-49
MsaG025726	MsaG040264	0.810684	1.746251e-50	3.032163e-48
MsaG025726	MsaG040506	0.840303	1.743991e-57	6.873366e-55
MsaG025726	MsaG040676	0.803799	4.942250e-49	7.287057e-47
MsaG025726	MsaG040749	0.808226	5.850057e-50	9.571996e-48
MsaG025726	MsaG040927	0.800972	1.877542e-48	2.594811e-46
MsaG025726	MsaG041066	0.800358	2.501320e-48	3.409452e-46
MsaG025726	MsaG041370	0.802219	1.044741e-48	1.485345e-46
MsaG025726	MsaG041457	0.819072	2.458182e-52	5.275965e-50
MsaG025726	MsaG041532	0.822186	4.771570e-53	1.112078e-50
MsaG025726	MsaG041930	0.839651	2.574505e-57	9.940533e-55
MsaG025726	MsaG041982	0.800966	1.883148e-48	2.602176e-46
MsaG025726	MsaG042381	0.805701	1.989275e-49	3.065493e-47
MsaG025726	MsaG042711	0.849241	6.967341e-60	3.679736e-57
MsaG025726	MsaG042808	0.830527	5.026319e-55	1.476658e-52
MsaG025726	MsaG042839	0.800220	2.667748e-48	3.624858e-46
MsaG025726	MsaG043751	0.805835	1.865572e-49	2.883879e-47
MsaG025726	MsaG043809	0.857732	2.604097e-62	1.859173e-59
MsaG025726	MsaG043810	0.837448	9.475705e-57	3.417178e-54
MsaG025726	MsaG043818	0.809820	2.676718e-50	4.551296e-48
MsaG025726	MsaG043880	0.831603	2.743947e-55	8.316512e-53
MsaG025726	MsaG044018	0.803035	7.106719e-49	1.029470e-46
MsaG025726	MsaG044065	0.830397	5.407052e-55	1.582735e-52
MsaG025726	MsaG044120	0.825143	9.766702e-54	2.466430e-51
MsaG025726	MsaG044369	0.804777	3.099015e-49	4.674028e-47
MsaG025726	MsaG045290	0.801892	1.218812e-48	1.720038e-46
MsaG025726	MsaG045786	0.807070	1.026736e-49	1.634129e-47
MsaG025726	MsaG045870	0.860664	3.471944e-63	2.769150e-60
MsaG025726	MsaG045930	0.805552	2.137246e-49	3.281941e-47
MsaG025726	MsaG046281	0.809705	2.832409e-50	4.802574e-48
MsaG025726	MsaG046289	0.800334	2.529617e-48	3.446060e-46
MsaG025726	MsaG046329	0.802505	9.128723e-49	1.306434e-46
MsaG025726	MsaG046321	0.815877	1.279579e-51	2.529081e-49
MsaG025726	MsaG046502	0.806846	1.144527e-49	1.811984e-47
MsaG025726	MsaG046700	0.811390	1.229492e-50	2.172184e-48
MsaG025726	MsaG046753	0.843893	1.978568e-58	8.742544e-56
MsaG025726	MsaG046868	0.818345	3.588033e-52	7.556016e-50
MsaG025726	MsaG046909	0.812609	6.691430e-51	1.218242e-48
MsaG025726	MsaG046981	0.835275	3.363987e-56	1.136079e-53
MsaG025726	MsaG047016	0.828931	1.224316e-54	3.436542e-52
MsaG025726	MsaG047018	0.851124	2.079037e-60	1.171303e-57
MsaG025726	MsaG047137	0.836163	2.008337e-56	6.966209e-54
MsaG025726	MsaG002244	0.821223	7.949565e-53	1.805933e-50
MsaG025726	MsaG002462	0.818593	3.154591e-52	6.686135e-50
MsaG025726	MsaG004323	0.807209	9.597352e-50	1.532505e-47
MsaG025726	MsaG008205	0.825706	7.196728e-54	1.846009e-51
MsaG025726	MsaG010138	0.807587	7.986812e-50	1.286892e-47
MsaG025726	MsaG016712	0.837249	1.065286e-56	3.818022e-54
MsaG025726	MsaG011916	0.802982	7.286818e-49	1.054285e-46
MsaG025726	MsaG013409	0.806851	1.141788e-49	1.807873e-47
MsaG025726	MsaG018328	0.803836	4.856944e-49	7.167252e-47
MsaG025726	MsaG019703	0.812687	6.433141e-51	1.173515e-48
MsaG025726	MsaG027355	0.812004	9.055653e-51	1.624152e-48
MsaG025726	MsaG026802	0.821875	5.631149e-53	1.301539e-50
MsaG025726	MsaG027436	0.810661	1.765952e-50	3.064700e-48
MsaG025726	MsaG031743	0.804576	3.413013e-49	5.123581e-47
MsaG025726	MsaG033379	0.816004	1.198817e-51	2.377113e-49
MsaG025726	MsaG034688	0.850511	3.087513e-60	1.703014e-57
MsaG025726	MsaG032545	0.801244	1.653209e-48	2.298817e-46
MsaG025726	MsaG031967	0.806563	1.312728e-49	2.064550e-47
MsaG025726	MsaG033622	0.867755	2.184046e-65	2.306530e-62
MsaG025726	MsaG032827	0.837652	8.407999e-57	3.050911e-54
MsaG025726	MsaG033067	0.876988	1.879138e-68	2.953750e-65
MsaG025726	MsaG032459	0.804573	3.416750e-49	5.128960e-47
MsaG025726	MsaG036522	0.814150	3.079254e-51	5.826406e-49
MsaG025726	MsaG036600	0.836180	1.989522e-56	6.904221e-54
MsaG025726	MsaG035954	0.824622	1.294485e-53	3.222775e-51
MsaG025726	MsaG035492	0.876909	2.000694e-68	3.133211e-65
MsaG025726	MsaG039594	0.845648	6.691644e-59	3.132507e-56
MsaG025726	MsaG034934	0.807933	6.749294e-50	1.096619e-47
MsaG025726	MsaG042294	0.825901	6.471246e-54	1.669004e-51
MsaG025726	MsaG042781	0.801364	1.562107e-48	2.178158e-46
MsaG025726	MsaG043341	0.819692	1.778248e-52	3.879094e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025726	MtrunA17_Chr5g0405151	100.000	184	0	0	1	184	1	184	3.61e-138	385
MsaG025726	MtrunA17_Chr2g0314671	50.000	104	49	2	1	101	1	104	7.85e-26	102
MsaG025726	MtrunA17_Chr4g0033641	42.537	134	71	4	1	131	1	131	3.15e-24	97.1
MsaG025726	MtrunA17_Chr3g0145061	43.000	100	53	2	1	96	1	100	2.39e-23	94.4
MsaG025726	MtrunA17_Chr2g0329511	47.959	98	48	2	1	95	1	98	6.17e-23	93.6
MsaG025726	MtrunA17_Chr3g0142221	42.105	114	61	2	1	109	1	114	6.17e-23	93.2
MsaG025726	MtrunA17_Chr4g0035651	44.000	100	52	2	1	96	1	100	3.63e-22	91.3
MsaG025726	MtrunA17_Chr1g0155811	46.000	100	50	2	1	96	1	100	1.04e-20	88.6
MsaG025726	MtrunA17_Chr3g0136701	50.602	83	33	1	4	86	5	79	4.51e-20	87.0
MsaG025726	MtrunA17_Chr1g0150471	44.211	95	43	2	4	96	5	91	3.36e-18	82.0
MsaG025726	MtrunA17_Chr7g0220721	48.750	80	33	1	5	84	26	97	1.99e-17	80.9
MsaG025726	MtrunA17_Chr4g0072871	43.210	81	38	1	4	84	21	93	7.42e-16	76.3
MsaG025726	MtrunA17_Chr7g0268691	38.750	80	41	1	5	84	20	91	7.70e-13	67.4
MsaG025726	MtrunA17_Chr3g0120711	33.036	112	63	2	1	112	1	100	4.31e-11	62.4
MsaG025726	MtrunA17_Chr5g0429341	36.905	84	45	1	1	84	1	76	5.54e-11	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025726	AT4G38960.1	60.870	184	44	3	1	184	1	156	5.77e-74	223
MsaG025726	AT4G38960.6	60.870	184	44	3	1	184	1	156	5.77e-74	223
MsaG025726	AT2G21320.1	60.326	184	46	3	1	184	1	157	3.88e-70	213
MsaG025726	AT4G38960.3	49.558	226	43	4	1	183	1	198	9.94e-66	204
MsaG025726	AT4G38960.4	55.263	152	40	3	34	185	1	124	1.43e-51	165
MsaG025726	AT4G38960.5	55.333	150	39	3	34	183	1	122	1.00e-50	163
MsaG025726	AT4G38960.2	55.333	150	39	3	34	183	1	122	1.00e-50	163
MsaG025726	AT1G78600.1	50.000	104	49	2	1	101	1	104	8.16e-27	105
MsaG025726	AT1G78600.2	50.000	104	49	2	1	101	1	104	9.97e-27	105
MsaG025726	AT1G06040.2	50.000	98	46	2	1	95	1	98	1.12e-23	94.4
MsaG025726	AT4G39070.1	46.000	100	50	2	1	96	1	100	3.02e-23	95.1
MsaG025726	AT1G75540.1	45.098	102	50	2	1	96	1	102	3.37e-23	96.7
MsaG025726	AT1G06040.1	50.000	98	46	2	1	95	1	98	3.96e-23	94.7
MsaG025726	AT2G24790.2	36.994	173	87	9	4	166	7	167	1.56e-20	87.0
MsaG025726	AT2G31380.1	38.732	142	69	3	1	124	1	142	2.41e-20	87.0
MsaG025726	AT2G24790.1	47.826	92	38	2	4	93	7	90	7.73e-20	86.7
MsaG025726	AT5G24930.1	48.148	81	34	1	4	84	5	77	9.16e-19	84.7
MsaG025726	AT5G15850.1	47.253	91	38	2	5	93	12	94	1.35e-18	84.0
MsaG025726	AT4G10240.1	42.718	103	50	2	1	96	1	101	1.56e-18	80.5
MsaG025726	AT3G02380.1	48.750	80	33	1	5	84	16	87	9.23e-18	81.6
MsaG025726	AT5G15840.1	50.000	80	32	1	5	84	20	91	2.19e-17	80.9
MsaG025726	AT2G47890.3	42.222	90	44	1	4	93	12	93	2.59e-17	80.1
MsaG025726	AT2G47890.1	42.222	90	44	1	4	93	12	93	2.67e-17	80.1
MsaG025726	AT5G15840.2	50.000	80	32	1	5	84	20	91	3.30e-17	79.3
MsaG025726	AT2G47890.2	42.222	90	44	1	4	93	12	93	6.01e-17	77.8
MsaG025726	AT5G57660.1	42.500	80	34	2	5	84	22	89	4.29e-13	68.6
MsaG025726	AT1G68190.1	38.710	93	49	1	1	93	10	94	1.03e-12	67.4
MsaG025726	AT1G68190.3	38.710	93	49	1	1	93	10	94	1.03e-12	67.4
MsaG025726	AT1G28050.1	42.169	83	40	1	2	84	6	80	1.22e-12	67.4
MsaG025726	AT1G68190.2	38.710	93	49	1	1	93	39	123	1.23e-12	67.0
MsaG025726	AT2G33500.2	40.000	80	40	1	5	84	12	83	4.18e-11	62.8
MsaG025726	AT2G33500.1	40.000	80	40	1	5	84	12	83	4.22e-11	62.8

Find 47 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTTCATGTATTCTGTTGTT+AGG	0.314824	5:+11947715	None:intergenic
CTCTTTGTTTCATAGTTTCC+AGG	0.319859	5:-11947937	MsaT025726.1:intron
AATAATCAGGTTAGAGTTCA+TGG	0.327088	5:-11947685	MsaT025726.1:CDS
AGTTAGCTAGTAGACATGTT+AGG	0.334611	5:-11948533	MsaT025726.1:CDS
TTGCTTTGTAGCACGATCTA+TGG	0.342553	5:+11946826	None:intergenic
ATGGAAGATATCTTCTCTTT+AGG	0.344786	5:-11948282	MsaT025726.1:CDS
TTAGAATTCCCATCAGCATT+AGG	0.367971	5:+11947772	None:intergenic
TGAACATGCATCAAATAATC+AGG	0.417562	5:-11947698	MsaT025726.1:CDS
GCCGGGTTGTCTGCATTACT+AGG	0.455216	5:+11947907	None:intergenic
GAGAGAAGCAACAAAATCAT+AGG	0.461871	5:-11947819	MsaT025726.1:CDS
GGATCTAGAGGTTGTGAAGC+CGG	0.462473	5:+11947889	None:intergenic
AGTGAAATTGATAAACGTAT+TGG	0.464815	5:-11947575	MsaT025726.1:CDS
AACGTATTGGCTGTTGCTAC+TGG	0.479764	5:-11947562	MsaT025726.1:intron
TCAGCATTAGGTTCTGAAGT+TGG	0.480629	5:+11947784	None:intergenic
CAGCCATAGGTTGTGCTACA+AGG	0.481804	5:-11946886	MsaT025726.1:CDS
TCGCACCGCGGCACGTCACT+CGG	0.487301	5:+11948495	None:intergenic
CATATCACATTGCAAACAAA+GGG	0.494623	5:+11948333	None:intergenic
CTGCCTTGTAGCACAACCTA+TGG	0.498589	5:+11946883	None:intergenic
GTTAGCTAGTAGACATGTTA+GGG	0.499857	5:-11948532	MsaT025726.1:CDS
TTAGGTTCTGAAGTTGGAAC+CGG	0.500416	5:+11947790	None:intergenic
AAGAATTTGTTCTCTCATGT+AGG	0.509169	5:-11946793	MsaT025726.1:CDS
GCATTACTAGGTTTATCGCC+TGG	0.511209	5:+11947919	None:intergenic
TGCTGATGGGAATTCTAAGA+TGG	0.518367	5:-11947767	MsaT025726.1:CDS
GATCCAGGTGATATTAAAAG+AGG	0.532561	5:-11947871	MsaT025726.1:CDS
GATCTAGAGGTTGTGAAGCC+GGG	0.534120	5:+11947890	None:intergenic
TCATATCACATTGCAAACAA+AGG	0.534969	5:+11948332	None:intergenic
TTAATATCACCTGGATCTAG+AGG	0.539036	5:+11947877	None:intergenic
GCTTCACAACCTCTAGATCC+AGG	0.543997	5:-11947886	MsaT025726.1:CDS
TCTCTTTAGGCAAAGAGTTG+AGG	0.545750	5:-11948269	MsaT025726.1:intron
TTCTTCTATTGCGAAACAGA+TGG	0.548785	5:-11948361	MsaT025726.1:CDS
ACTTCAGAACCTAATGCTGA+TGG	0.548946	5:-11947781	MsaT025726.1:CDS
GCTAGTAGACATGTTAGGGT+TGG	0.553453	5:-11948528	MsaT025726.1:CDS
ACCTAGTAATGCAGACAACC+CGG	0.558690	5:-11947908	MsaT025726.1:CDS
CAAGGCAGTCTGATTCCGAC+AGG	0.563913	5:-11946868	MsaT025726.1:CDS
ACAAAATCATAGGATGCCTC+CGG	0.578363	5:-11947809	MsaT025726.1:CDS
GTTGGTGGTAAAAGAACGCA+TGG	0.582566	5:-11948301	MsaT025726.1:CDS
ATAATCAGGTTAGAGTTCAT+GGG	0.583574	5:-11947684	MsaT025726.1:CDS
CAAGTCCGAGTGACGTGCCG+CGG	0.583612	5:-11948500	MsaT025726.1:CDS
CTTCAGAACCTAATGCTGAT+GGG	0.588602	5:-11947780	MsaT025726.1:CDS
CTGTCGTGCTTGTGATGAGA+AGG	0.598560	5:-11949054	MsaT025726.1:intron
GGTTCTGAAGTTGGAACCGG+AGG	0.621508	5:+11947793	None:intergenic
GACATATGTGAGAATGCCCC+TGG	0.645262	5:-11948474	MsaT025726.1:intron
GATATGATAGTTCATGTTGG+TGG	0.666400	5:-11948316	MsaT025726.1:CDS
TGTGATATGATAGTTCATGT+TGG	0.669655	5:-11948319	MsaT025726.1:CDS
AGCAGCACAGAAAACTATAG+CGG	0.689026	5:+11949091	None:intergenic
TTTCTGATGTAAGATCCTGT+CGG	0.715499	5:+11946853	None:intergenic
TTCTCACATATGTCGCACCG+CGG	0.743597	5:+11948483	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	11946778	11949147	11946778	ID=MsaG025726
Chr5	mRNA	11946778	11949147	11946778	ID=MsaT025726.1;Parent=MsaG025726
Chr5	exon	11946778	11946905	11946778	ID=MsaT025726.1.exon6;Parent=MsaT025726.1
Chr5	CDS	11946778	11946905	11946778	ID=cds.MsaT025726.1;Parent=MsaT025726.1
Chr5	exon	11947563	11947618	11947563	ID=MsaT025726.1.exon5;Parent=MsaT025726.1
Chr5	CDS	11947563	11947618	11947563	ID=cds.MsaT025726.1;Parent=MsaT025726.1
Chr5	exon	11947682	11947944	11947682	ID=MsaT025726.1.exon4;Parent=MsaT025726.1
Chr5	CDS	11947682	11947944	11947682	ID=cds.MsaT025726.1;Parent=MsaT025726.1
Chr5	exon	11948270	11948385	11948270	ID=MsaT025726.1.exon3;Parent=MsaT025726.1
Chr5	CDS	11948270	11948385	11948270	ID=cds.MsaT025726.1;Parent=MsaT025726.1
Chr5	exon	11948475	11948571	11948475	ID=MsaT025726.1.exon2;Parent=MsaT025726.1
Chr5	CDS	11948475	11948571	11948475	ID=cds.MsaT025726.1;Parent=MsaT025726.1
Chr5	exon	11949055	11949147	11949055	ID=MsaT025726.1.exon1;Parent=MsaT025726.1
Chr5	CDS	11949055	11949147	11949055	ID=cds.MsaT025726.1;Parent=MsaT025726.1

Gene Sequence

>MsaT025726.1

ATGCGAACGCTTTGTGATGCTTGTGAGAGCGCTGCCGCTATAGTTTTCTGTGCTGCTGATGAGGCTGCACTCTGTCGTGCTTGTGATGAGAAGGTTCATATGTGCAATAAGTTAGCTAGTAGACATGTTAGGGTTGGTCTTGCAAGTCCGAGTGACGTGCCGCGGTGCGACATATGTGAGAATGCCCCTGCTTTCTTCTATTGCGAAACAGATGGAAGTTCCCTTTGTTTGCAATGTGATATGATAGTTCATGTTGGTGGTAAAAGAACGCATGGAAGATATCTTCTCTTTAGGCAAAGAGTTGAGTTTCCAGGCGATAAACCTAGTAATGCAGACAACCCGGCTTCACAACCTCTAGATCCAGGTGATATTAAAAGAGGACAAAGTCCACTTCCTAAACAAAAAATGGGAGAGAAGCAACAAAATCATAGGATGCCTCCGGTTCCAACTTCAGAACCTAATGCTGATGGGAATTCTAAGATGGAAAATAAATTGATTGATTTGAACATGAAGCCTAACAACAGAATACATGAACATGCATCAAATAATCAGGTTAGAGTTCATGGGAAATACTGCAAAATATACTTAAGAGTGAAATTGATAAACGTATTGGCTGTTGCTACTGCCATAGGTTGTGCTACAAGGCAGTCTGATTCCGACAGGATCTTACATCAGAAATCTACCATAGATCGTGCTACAAAGCAATGCGAGTCTAAAGAATTTGTTCTCTCATGTAGGAATTTAGTTTTTTAG

Protein sequence

>MsaT025726.1

MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPSNADNPASQPLDPGDIKRGQSPLPKQKMGEKQQNHRMPPVPTSEPNADGNSKMENKLIDLNMKPNNRIHEHASNNQVRVHGKYCKIYLRVKLINVLAVATAIGCATRQSDSDRILHQKSTIDRATKQCESKEFVLSCRNLVF*