AlfalfaGEDB | MsaG025750

M. sativa ssp. caerulea / MsaG025750

KEGG: -
GO: GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025750	XP_003612158.1	96.466	283	8	2	1	283	22	302	0.0	568

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025750	sp\|Q8LL11\|WUS_PETHY	48.797	291	99	12	4	274	42	302	4.73e-69	219

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025750	tr\|B7UCW4\|B7UCW4_MEDTR	96.466	283	8	2	1	283	22	302	0.0	568

TFs/TRs:

Gene ID	Type	Classification
MsaG025750	TF	HB-WOX

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000083	MsaG025750	0.812006	9.047661e-51	1.622789e-48
MsaG000113	MsaG025750	0.811124	1.403920e-50	2.464137e-48
MsaG000292	MsaG025750	0.800376	2.480382e-48	3.382239e-46
MsaG001861	MsaG025750	0.824523	1.365440e-53	3.390396e-51
MsaG002291	MsaG025750	0.814514	2.560983e-51	4.890253e-49
MsaG002539	MsaG025750	0.804854	2.988025e-49	4.514744e-47
MsaG002681	MsaG025750	0.801902	1.213494e-48	1.712879e-46
MsaG003684	MsaG025750	0.805047	2.724155e-49	4.134569e-47
MsaG004308	MsaG025750	0.804972	2.823703e-49	4.278082e-47
MsaG005138	MsaG025750	0.802582	8.802605e-49	1.261989e-46
MsaG006788	MsaG025750	0.804313	3.870033e-49	5.774459e-47
MsaG006841	MsaG025750	0.812071	8.756819e-51	1.573092e-48
MsaG006871	MsaG025750	0.801097	1.770999e-48	2.454477e-46
MsaG007658	MsaG025750	0.810517	1.896505e-50	3.279797e-48
MsaG008033	MsaG025750	0.807468	8.464943e-50	1.360053e-47
MsaG009156	MsaG025750	0.802388	9.648372e-49	1.377113e-46
MsaG009852	MsaG025750	0.801279	1.626040e-48	2.262873e-46
MsaG010594	MsaG025750	0.800957	1.890393e-48	2.611719e-46
MsaG011336	MsaG025750	0.819754	1.721321e-52	3.760996e-50
MsaG011459	MsaG025750	0.815722	1.384623e-51	2.726029e-49
MsaG012130	MsaG025750	0.806342	1.460423e-49	2.284882e-47
MsaG014149	MsaG025750	0.814889	2.117048e-51	4.081016e-49
MsaG014508	MsaG025750	0.814238	2.945203e-51	5.585278e-49
MsaG015180	MsaG025750	0.807383	8.819999e-50	1.414251e-47
MsaG015447	MsaG025750	0.813630	4.004473e-51	7.479013e-49
MsaG016250	MsaG025750	0.820016	1.501093e-52	3.302898e-50
MsaG017348	MsaG025750	0.804277	3.935484e-49	5.867455e-47
MsaG017459	MsaG025750	0.824051	1.760422e-53	4.315339e-51
MsaG018355	MsaG025750	0.817122	6.752368e-52	1.377917e-49
MsaG018780	MsaG025750	0.815806	1.327038e-51	2.618150e-49
MsaG018876	MsaG025750	0.806509	1.347533e-49	2.116610e-47
MsaG019906	MsaG025750	0.804169	4.143609e-49	6.162160e-47
MsaG020091	MsaG025750	0.803607	5.416048e-49	7.949952e-47
MsaG020469	MsaG025750	0.801882	1.224921e-48	1.728228e-46
MsaG020648	MsaG025750	0.814072	3.203093e-51	6.048992e-49
MsaG021087	MsaG025750	0.808524	5.056476e-50	8.333221e-48
MsaG021223	MsaG025750	0.818567	3.197321e-52	6.772072e-50
MsaG021783	MsaG025750	0.801977	1.171092e-48	1.655834e-46
MsaG022454	MsaG025750	0.816768	8.103292e-52	1.638513e-49
MsaG022548	MsaG025750	0.814542	2.524102e-51	4.823233e-49
MsaG023664	MsaG025750	0.803619	5.385889e-49	7.907844e-47
MsaG023645	MsaG025750	0.807193	9.671337e-50	1.543778e-47
MsaG025535	MsaG025750	0.806605	1.286242e-49	2.024939e-47
MsaG025750	MsaG026601	0.814775	2.243423e-51	4.312245e-49
MsaG025750	MsaG026794	0.804190	4.102890e-49	6.104598e-47
MsaG025750	MsaG027829	0.809913	2.555837e-50	4.355540e-48
MsaG025750	MsaG027991	0.809568	3.029237e-50	5.119661e-48
MsaG025750	MsaG028194	0.803806	4.926075e-49	7.264322e-47
MsaG025750	MsaG028328	0.802440	9.415597e-49	1.345457e-46
MsaG025750	MsaG028417	0.803581	5.482884e-49	8.043351e-47
MsaG025750	MsaG028742	0.808736	4.559239e-50	7.552421e-48
MsaG025750	MsaG028970	0.866726	4.639343e-65	4.698784e-62
MsaG025750	MsaG029083	0.804857	2.983778e-49	4.508616e-47
MsaG025750	MsaG030265	0.801679	1.347434e-48	1.892289e-46
MsaG025750	MsaG030578	0.815340	1.682662e-51	3.280872e-49
MsaG025750	MsaG034005	0.806793	1.174300e-49	1.856845e-47
MsaG025750	MsaG034111	0.810752	1.688224e-50	2.936338e-48
MsaG025750	MsaG035456	0.800942	1.904266e-48	2.629981e-46
MsaG025750	MsaG038991	0.811195	1.354666e-50	2.381880e-48
MsaG025750	MsaG040266	0.802331	9.913593e-49	1.413121e-46
MsaG025750	MsaG040354	0.800460	2.385963e-48	3.259638e-46
MsaG025750	MsaG041066	0.804001	4.490690e-49	6.652241e-47
MsaG025750	MsaG041135	0.806548	1.322166e-49	2.078664e-47
MsaG025750	MsaG041878	0.800146	2.761461e-48	3.745942e-46
MsaG025750	MsaG043880	0.808159	6.043399e-50	9.872604e-48
MsaG025750	MsaG045051	0.800505	2.335464e-48	3.193914e-46
MsaG025750	MsaG045314	0.800647	2.185485e-48	2.998513e-46
MsaG025750	MsaG045425	0.814595	2.457355e-51	4.701925e-49
MsaG025750	MsaG046281	0.815024	1.976543e-51	3.823127e-49
MsaG025750	MsaG046289	0.818755	2.899627e-52	6.171716e-50
MsaG025750	MsaG046329	0.811895	9.562880e-51	1.710562e-48
MsaG025750	MsaG046321	0.800589	2.246461e-48	3.078029e-46
MsaG025750	MsaG046374	0.801811	1.266627e-48	1.784161e-46
MsaG025750	MsaG046786	0.802283	1.013897e-48	1.443622e-46
MsaG025750	MsaG000632	0.810308	2.102967e-50	3.618394e-48
MsaG025750	MsaG004516	0.817033	7.069072e-52	1.439237e-49
MsaG025750	MsaG013105	0.800252	2.628531e-48	3.574167e-46
MsaG025750	MsaG011916	0.801563	1.423188e-48	1.993364e-46
MsaG025750	MsaG013067	0.810126	2.301042e-50	3.941550e-48
MsaG025750	MsaG012158	0.804036	4.415908e-49	6.547097e-47
MsaG025750	MsaG018051	0.804096	4.291740e-49	6.371846e-47
MsaG025750	MsaG028474	0.800621	2.212750e-48	3.034123e-46
MsaG025750	MsaG032466	0.803895	4.722143e-49	6.977860e-47
MsaG025750	MsaG034539	0.803865	4.789609e-49	7.072741e-47
MsaG025750	MsaG039944	0.804499	3.539589e-49	5.304312e-47
MsaG025750	MsaG041441	0.810852	1.606850e-50	2.801614e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025750	MtrunA17_Chr5g0405351	96.466	283	8	2	1	283	22	302	0.0	568
MsaG025750	MtrunA17_Chr4g0043891	67.164	67	21	1	5	71	4	69	6.98e-26	102
MsaG025750	MtrunA17_Chr8g0392991	70.769	65	18	1	7	71	94	157	1.08e-25	104
MsaG025750	MtrunA17_Chr5g0436661	59.459	74	26	2	9	79	33	105	1.50e-24	97.4
MsaG025750	MtrunA17_Chr7g0238431	67.692	65	20	1	7	71	6	69	5.09e-24	96.7
MsaG025750	MtrunA17_Chr4g0031341	68.254	63	19	1	9	71	25	86	9.55e-24	97.1
MsaG025750	MtrunA17_Chr1g0153171	64.062	64	22	1	8	71	89	151	1.57e-22	93.2
MsaG025750	MtrunA17_Chr8g0385441	78.723	47	10	0	25	71	97	143	1.84e-19	83.2
MsaG025750	MtrunA17_Chr3g0125111	76.596	47	11	0	25	71	95	141	3.27e-19	82.4
MsaG025750	MtrunA17_Chr7g0223471	48.438	64	32	1	9	72	47	109	4.87e-15	74.7
MsaG025750	MtrunA17_Chr2g0283141	44.928	69	37	1	3	71	49	116	3.37e-14	72.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025750	AT2G17950.1	41.699	259	103	9	4	236	33	269	1.52e-47	160
MsaG025750	AT3G18010.1	70.769	65	18	1	7	71	74	137	1.00e-25	104
MsaG025750	AT5G59340.1	69.697	66	19	1	6	71	11	75	1.08e-25	102
MsaG025750	AT2G28610.1	65.152	66	22	1	6	71	5	69	2.64e-23	95.9
MsaG025750	AT3G11260.1	65.079	63	21	1	9	71	24	85	4.03e-23	94.0
MsaG025750	AT5G05770.1	62.319	69	25	1	9	77	29	96	5.22e-23	91.7
MsaG025750	AT1G46480.2	64.062	64	22	1	8	71	89	151	1.25e-22	92.8
MsaG025750	AT1G46480.1	64.062	64	22	1	8	71	89	151	7.87e-22	92.0
MsaG025750	AT2G01500.1	61.017	59	22	1	6	64	58	115	5.30e-19	84.7
MsaG025750	AT5G45980.1	52.381	63	29	1	9	71	55	116	5.36e-15	74.3
MsaG025750	AT2G33880.2	45.714	70	37	1	3	72	49	117	1.12e-14	73.9
MsaG025750	AT2G33880.1	45.714	70	37	1	3	72	49	117	1.18e-14	73.6
MsaG025750	AT1G20700.2	39.130	69	41	1	9	77	33	100	7.67e-11	59.7

Find 59 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCATCCTAAGTGAGGGTTTA+TGG	0.166513	5:+12284642	None:intergenic
AATGGGAGGGTTTCAATTTC+AGG	0.198475	5:+12284505	None:intergenic
CTGTTATTGCTGCTGCTAAT+TGG	0.280712	5:-12285483	MsaT025750.1:CDS
CAAATTTAATTAGCATAATC+TGG	0.300562	5:+12284322	None:intergenic
TTTGCATAAGCTGAAGAATA+TGG	0.309877	5:+12284598	None:intergenic
TCTTCCATGATTTCTTCATT+TGG	0.323131	5:+12284556	None:intergenic
CTCTGAATCTGTTCTGCACT+TGG	0.338799	5:+12285658	None:intergenic
TATGAACAAGGACAAGAAAA+TGG	0.342235	5:-12284532	MsaT025750.1:CDS
ATTCTTATCTGATCTGTTGT+TGG	0.355808	5:+12285718	None:intergenic
CAGATTGGTAACTATGGATA+TGG	0.369373	5:-12285230	MsaT025750.1:CDS
TCAGCATGCATAGGGAATAA+TGG	0.370597	5:+12284487	None:intergenic
AAATCAAATTCATCTAACTA+TGG	0.374371	5:-12284436	MsaT025750.1:CDS
CAGCATGCATAGGGAATAAT+GGG	0.394880	5:+12284488	None:intergenic
GCAATAACAGTATTGTTGTT+TGG	0.399113	5:+12285496	None:intergenic
GTAGGCCAGATTGGTAACTA+TGG	0.413013	5:-12285236	MsaT025750.1:CDS
TCTGCTAGGTTAAGACAGTA+TGG	0.419676	5:-12285631	MsaT025750.1:CDS
TGTTGTTGTTCATGTTGATC+AGG	0.421893	5:+12285457	None:intergenic
GCCTCAACTCTTACGGTTGT+AGG	0.423475	5:-12284348	MsaT025750.1:CDS
AATTACAACATTTCATCTGC+TGG	0.424173	5:-12285403	MsaT025750.1:intron
TGGTTCTCGTACTACTTCCT+TGG	0.429314	5:-12284377	MsaT025750.1:CDS
ATGAAATGTTGTAATTAGAA+TGG	0.431892	5:+12285410	None:intergenic
CTAGAGAAAGACAGAAGAAA+AGG	0.441919	5:-12285561	MsaT025750.1:CDS
GTTTGGTGCTCTTTGAATGA+TGG	0.443486	5:+12285513	None:intergenic
CATATCCATAGTTACCAATC+TGG	0.452599	5:+12285231	None:intergenic
TTTGGTGCTCTTTGAATGAT+GGG	0.453249	5:+12285514	None:intergenic
GAACTTAGCCTCAACTCTTA+CGG	0.457853	5:-12284355	MsaT025750.1:CDS
AAGACCAAATGAAGAAATCA+TGG	0.463541	5:-12284560	MsaT025750.1:CDS
ATGGTTACTGTAGGCCAGAT+TGG	0.471455	5:-12285245	MsaT025750.1:CDS
AGTTAGATGAATTTGATTTG+AGG	0.476215	5:+12284440	None:intergenic
AGATCAGATAAGAATATTGA+AGG	0.488670	5:-12285710	MsaT025750.1:CDS
TTCATGTTCTTCTGCTGAGA+TGG	0.491391	5:-12285264	MsaT025750.1:CDS
AACCCTCACTTAGGATGGAT+TGG	0.497436	5:-12284637	MsaT025750.1:CDS
AAGGATCTTTACTACAACAA+TGG	0.504008	5:-12285691	MsaT025750.1:CDS
AGACAGTATGGTAAGATTGA+AGG	0.507784	5:-12285619	MsaT025750.1:CDS
GGATGTAGCAGTAGTCAAGT+TGG	0.507987	5:-12284670	MsaT025750.1:CDS
TAGGAGTGCACAATATCAGC+TGG	0.529304	5:-12284691	MsaT025750.1:CDS
ATGCATGCTGAAGACATTCA+TGG	0.531289	5:-12284475	MsaT025750.1:CDS
TGGTATCAAGCTGAAGATGC+AGG	0.538672	5:-12284409	MsaT025750.1:CDS
CCATAAACCCTCACTTAGGA+TGG	0.538741	5:-12284642	MsaT025750.1:CDS
GAAGATGCAGGATTCATGTA+TGG	0.540471	5:-12284397	MsaT025750.1:CDS
GAATGTCTTCAGCATGCATA+GGG	0.542541	5:+12284479	None:intergenic
AATATGGATCAACATGATGA+TGG	0.557603	5:+12284614	None:intergenic
AGAGTTGAGGCTAAGTTCCA+AGG	0.568194	5:+12284360	None:intergenic
TGAATGTCTTCAGCATGCAT+AGG	0.569037	5:+12284478	None:intergenic
TCTGCTGAGATGGTTACTGT+AGG	0.577564	5:-12285254	MsaT025750.1:CDS
ATTCATCTAACTATGGTGGT+TGG	0.584464	5:-12284429	MsaT025750.1:CDS
TCAAATTCATCTAACTATGG+TGG	0.598577	5:-12284433	MsaT025750.1:CDS
AGTACCATAAACCCTCACTT+AGG	0.599826	5:-12284646	MsaT025750.1:CDS
TGGATATGGATCTGTCCCAA+TGG	0.601538	5:-12285216	MsaT025750.1:CDS
AGATTCAGAGAATCTCTGCT+AGG	0.608727	5:-12285645	MsaT025750.1:CDS
ACCTACAACCGTAAGAGTTG+AGG	0.617544	5:+12284347	None:intergenic
GGCCAATCCATCCTAAGTGA+GGG	0.618647	5:+12284635	None:intergenic
GCAGCAGACAAAGTAGTACA+AGG	0.645018	5:-12285747	MsaT025750.1:CDS
TGGCCAATCCATCCTAAGTG+AGG	0.646941	5:+12284634	None:intergenic
CATGCATAGGGAATAATGGG+AGG	0.647449	5:+12284491	None:intergenic
ATGCATAGGGAATAATGGGA+GGG	0.659824	5:+12284492	None:intergenic
ATCATGGAAGAATATGAACA+AGG	0.690834	5:-12284544	MsaT025750.1:CDS
GCAGACAAAGTAGTACAAGG+TGG	0.749876	5:-12285744	MsaT025750.1:CDS
CATGCTGAAGACATTCATGG+TGG	0.790217	5:-12284472	MsaT025750.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	12284327	12285773	12284327	ID=MsaG025750
Chr5	mRNA	12284327	12285773	12284327	ID=MsaT025750.1;Parent=MsaG025750
Chr5	exon	12284327	12284710	12284327	ID=MsaT025750.1.exon3;Parent=MsaT025750.1
Chr5	CDS	12284327	12284710	12284327	ID=cds.MsaT025750.1;Parent=MsaT025750.1
Chr5	exon	12285202	12285299	12285202	ID=MsaT025750.1.exon2;Parent=MsaT025750.1
Chr5	CDS	12285202	12285299	12285202	ID=cds.MsaT025750.1;Parent=MsaT025750.1
Chr5	exon	12285404	12285773	12285404	ID=MsaT025750.1.exon1;Parent=MsaT025750.1
Chr5	CDS	12285404	12285773	12285404	ID=cds.MsaT025750.1;Parent=MsaT025750.1

Gene Sequence

>MsaT025750.1

ATGGGCAGCAGACAAAGTAGTACAAGGTGGACACCAACAACAGATCAGATAAGAATATTGAAGGATCTTTACTACAACAATGGAATTAGATCACCAAGTGCAGAACAGATTCAGAGAATCTCTGCTAGGTTAAGACAGTATGGTAAGATTGAAGGCAAAAATGTCTTTTATTGGTTTCAAAATCACAAAGCTAGAGAAAGACAGAAGAAAAGGTTCACTTCTGATGTTAATGTTGTTCCCATCATTCAAAGAGCACCAAACAACAATACTGTTATTGCTGCTGCTAATTGGAAACCTGATCAACATGAACAACAACAACAAAACATTAATCTTCACACAAACCATTCTAATTACAACATTTCATCTGCTGGGCTTTCTTCTGCTTCATGTTCTTCTGCTGAGATGGTTACTGTAGGCCAGATTGGTAACTATGGATATGGATCTGTCCCAATGGAAAAGAGTTTTAGGGAGTGCACAATATCAGCTGGATGTAGCAGTAGTCAAGTTGGAAGTACCATAAACCCTCACTTAGGATGGATTGGCCATCATCATGTTGATCCATATTCTTCAGCTTATGCAAACTTATTTGAAAAAATAAGACCAAATGAAGAAATCATGGAAGAATATGAACAAGGACAAGAAAATGGTTCACCTGAAATTGAAACCCTCCCATTATTCCCTATGCATGCTGAAGACATTCATGGTGGCTATTGTAACCTCAAATCAAATTCATCTAACTATGGTGGTTGGTATCAAGCTGAAGATGCAGGATTCATGTATGGTTCTCGTACTACTTCCTTGGAACTTAGCCTCAACTCTTACGGTTGTAGGTCACCAGATTATGCTAATTAA

Protein sequence

>MsaT025750.1

MGSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVNVVPIIQRAPNNNTVIAAANWKPDQHEQQQQNINLHTNHSNYNISSAGLSSASCSSAEMVTVGQIGNYGYGSVPMEKSFRECTISAGCSSSQVGSTINPHLGWIGHHHVDPYSSAYANLFEKIRPNEEIMEEYEQGQENGSPEIETLPLFPMHAEDIHGGYCNLKSNSSNYGGWYQAEDAGFMYGSRTTSLELSLNSYGCRSPDYAN*