AlfalfaGEDB | MsaG025780

M. sativa ssp. caerulea / MsaG025780

KEGG: -
GO: GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005034 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009791 GO:0009927 GO:0009987 GO:0010035 GO:0010154 GO:0010375 GO:0010431 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071695 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700
PFAM: PF00512.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025780	XP_003612202.2	98.043	1175	23	0	1	1175	25	1199	0.0	2411

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025780	sp\|Q9SXL4\|AHK1_ARATH	65.356	1195	370	12	4	1175	26	1199	0.0	1578

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025780	tr\|G7JXI9\|G7JXI9_MEDTR	98.043	1175	23	0	1	1175	25	1199	0.0	2411

TFs/TRs:

Gene ID	Type	Classification
MsaG025780	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025780	MtrunA17_Chr5g0405701	98.043	1175	23	0	1	1175	25	1199	0.0	2411
MsaG025780	MtrunA17_Chr8g0371601	74.003	1204	251	14	1	1176	1	1170	0.0	1759
MsaG025780	MtrunA17_Chr1g0197591	31.593	383	234	7	384	748	280	652	1.95e-40	162
MsaG025780	MtrunA17_Chr1g0197591	38.129	139	63	5	1021	1159	921	1036	7.19e-16	83.2
MsaG025780	MtrunA17_Chr8g0377481	34.062	320	187	6	438	740	345	657	3.51e-38	155
MsaG025780	MtrunA17_Chr8g0377481	34.722	144	62	2	1023	1160	838	955	6.06e-18	90.1
MsaG025780	MtrunA17_Chr1g0194741	33.429	347	209	8	397	724	307	650	5.56e-38	152
MsaG025780	MtrunA17_Chr3g0122391	30.607	379	232	9	380	740	344	709	6.43e-38	154
MsaG025780	MtrunA17_Chr3g0122391	34.932	146	64	2	1020	1160	893	1012	1.03e-16	85.9
MsaG025780	MtrunA17_Chr8g0392301	33.036	336	191	7	438	740	336	670	6.91e-36	148
MsaG025780	MtrunA17_Chr8g0392301	31.953	169	74	4	1023	1176	858	1000	1.82e-15	82.0
MsaG025780	MtrunA17_Chr5g0447641	30.982	326	191	6	440	740	572	888	5.49e-32	135
MsaG025780	MtrunA17_Chr5g0447641	30.994	171	68	4	1014	1160	1056	1200	1.63e-13	75.5
MsaG025780	MtrunA17_Chr7g0269631	33.721	258	145	4	475	730	334	567	8.55e-32	133
MsaG025780	MtrunA17_Chr4g0013831	32.210	267	154	5	475	739	334	575	2.89e-29	125
MsaG025780	MtrunA17_Chr3g0136601	30.822	292	153	6	488	746	373	648	1.01e-25	115
MsaG025780	MtrunA17_Chr1g0150511	28.990	307	168	6	488	746	379	683	3.87e-24	110
MsaG025780	MtrunA17_Chr1g0194731	31.250	160	86	4	1010	1168	312	448	2.07e-15	80.5
MsaG025780	MtrunA17_Chr7g0274831	24.924	329	216	6	474	796	364	667	4.45e-14	77.0
MsaG025780	MtrunA17_Chr8g0343551	52.381	63	26	2	1097	1159	15	73	3.22e-13	66.6
MsaG025780	MtrunA17_Chr1g0186431	31.655	139	94	1	475	613	355	492	2.76e-12	71.2
MsaG025780	MtrunA17_Chr1g0190021	24.282	383	224	12	474	834	360	698	3.10e-11	67.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025780	AT2G17820.1	65.356	1195	370	12	4	1175	26	1199	0.0	1578
MsaG025780	AT2G47430.1	25.748	1103	642	33	160	1160	81	1108	1.36e-72	264
MsaG025780	AT1G27320.1	34.036	332	209	4	435	757	400	730	8.68e-42	167
MsaG025780	AT1G27320.1	32.051	156	62	2	1023	1160	887	1016	8.11e-15	80.1
MsaG025780	AT2G01830.2	32.727	330	195	6	444	748	431	758	1.87e-41	166
MsaG025780	AT2G01830.2	33.540	161	75	2	1020	1174	939	1073	6.63e-17	87.0
MsaG025780	AT2G01830.5	33.230	322	188	6	444	740	420	739	2.12e-41	166
MsaG025780	AT2G01830.5	33.540	161	75	2	1020	1174	928	1062	8.81e-17	86.7
MsaG025780	AT2G01830.1	33.230	322	188	6	444	740	408	727	2.20e-41	166
MsaG025780	AT2G01830.1	33.540	161	75	2	1020	1174	916	1050	8.46e-17	86.7
MsaG025780	AT2G01830.4	33.230	322	188	6	444	740	408	727	2.20e-41	166
MsaG025780	AT2G01830.4	33.540	161	75	2	1020	1174	916	1050	8.46e-17	86.7
MsaG025780	AT2G01830.6	33.230	322	188	6	444	740	408	727	2.20e-41	166
MsaG025780	AT2G01830.6	33.540	161	75	2	1020	1174	916	1050	8.46e-17	86.7
MsaG025780	AT2G01830.3	33.230	322	188	6	444	740	408	727	2.20e-41	166
MsaG025780	AT2G01830.3	33.540	161	75	2	1020	1174	916	1050	8.46e-17	86.7
MsaG025780	AT5G35750.1	26.504	532	313	13	438	934	540	1028	1.60e-38	157
MsaG025780	AT5G35750.1	28.313	166	75	2	1027	1174	1036	1175	1.04e-14	80.1
MsaG025780	AT1G66340.1	32.453	265	152	5	475	739	333	570	1.94e-32	136
MsaG025780	AT5G10720.1	32.819	259	157	4	488	746	369	610	4.55e-29	126
MsaG025780	AT2G40940.1	31.884	276	158	5	459	728	313	564	1.35e-28	123
MsaG025780	AT3G04580.2	33.553	152	72	4	1018	1168	634	757	2.84e-13	75.1
MsaG025780	AT3G04580.2	25.806	341	211	12	473	796	355	670	8.48e-12	70.1
MsaG025780	AT3G04580.1	33.553	152	72	4	1018	1168	634	757	2.84e-13	75.1
MsaG025780	AT3G04580.1	25.806	341	211	12	473	796	355	670	8.48e-12	70.1

Find 187 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCGACGAAGCTCCGTCTTTA+TGG	0.118108	5:-12655533	None:intergenic
TTAAATCCTTCAAGATTTAT+TGG	0.172560	5:-12655340	None:intergenic
TCATCGGTTAACTTTAAAAT+TGG	0.200671	5:-12655763	None:intergenic
ATCTTGTATTTCTATCCTTC+TGG	0.218356	5:-12656098	None:intergenic
CATACCAAGAAAGTATATTA+TGG	0.249756	5:+12652503	MsaT025780.1:CDS
GAGTCACCTCTAACTAATTT+TGG	0.254567	5:-12653697	None:intergenic
TTCTTCTAATAAAAGTATTA+TGG	0.254759	5:+12651670	MsaT025780.1:CDS
GTTGCAACCCTTTGAATTAC+TGG	0.261968	5:-12655964	None:intergenic
GCCAATTGACTTCAAGCTTA+TGG	0.265808	5:+12656742	MsaT025780.1:CDS
GCTTGCACTACAAGGCAATA+TGG	0.271450	5:+12655171	MsaT025780.1:CDS
GAGTGGTTGCAGAGAACTTA+TGG	0.273458	5:+12651905	MsaT025780.1:CDS
TTCGGCAGCTTTACCTGTTT+GGG	0.279753	5:+12651646	MsaT025780.1:CDS
TTTCGGCAGCTTTACCTGTT+TGG	0.281134	5:+12651645	MsaT025780.1:CDS
ACACCTATGGCAGCAGTAAT+TGG	0.293817	5:+12653023	MsaT025780.1:CDS
CCGTCTTCTTAACAACATAT+TGG	0.293904	5:+12653136	MsaT025780.1:CDS
TGTCCCATAATATACTTTCT+TGG	0.296669	5:-12652507	None:intergenic
CTCTTTGCATGACTTGCATT+TGG	0.297699	5:-12654051	None:intergenic
TCAATATGATTTGATCCTAA+TGG	0.301867	5:+12656146	MsaT025780.1:CDS
AAGGAAGTCTCTTCAAGTTT+AGG	0.303079	5:-12652012	None:intergenic
GCCTCATATCCATCCATCTT+TGG	0.303088	5:-12656590	None:intergenic
TGTGAAATGCCAAGTTAATA+TGG	0.312108	5:-12650387	None:intergenic
CATCAAAGTTGTTATTGTTA+TGG	0.314539	5:-12655309	None:intergenic
TGAACCTCATGAGTTGAATT+AGG	0.323329	5:-12651938	None:intergenic
CATGCCAACCTTAAGGCATT+TGG	0.328149	5:-12656702	None:intergenic
GGACTATCGTTGCAAGAGTT+TGG	0.330068	5:-12653973	None:intergenic
AGTGGATGCTCTTAATTATA+TGG	0.332374	5:+12656044	MsaT025780.1:CDS
TTGCAACACAAGCTTATGAT+AGG	0.334949	5:+12655866	MsaT025780.1:CDS
TTGACTTAAGCACAGATATA+TGG	0.337006	5:+12655431	MsaT025780.1:CDS
AACTTCCTTCACAAGTATTT+CGG	0.341250	5:+12655466	MsaT025780.1:CDS
GTAATGTTAGCCATCTTGAT+AGG	0.342025	5:+12650356	MsaT025780.1:CDS
ACATGTTTAATAGACTATTC+AGG	0.345267	5:+12650051	MsaT025780.1:CDS
AGAAATCACTTGAGGGGTTA+AGG	0.349957	5:+12655920	MsaT025780.1:CDS
GCTTACAGTCTAGTAGTTGA+TGG	0.352312	5:-12654289	None:intergenic
AGAAATCAAGGTTACCAAAA+AGG	0.359146	5:+12654911	MsaT025780.1:CDS
TGAAAGATCTTTCAAAACTT+TGG	0.360778	5:+12652536	MsaT025780.1:CDS
AGCAGGACTTTCACAAGTTC+CGG	0.361656	5:+12651568	MsaT025780.1:CDS
TATGTACATTTCTAGGTTGT+TGG	0.363384	5:-12656791	None:intergenic
TACAGATTCGCCTTTGCTTT+CGG	0.364558	5:+12651628	MsaT025780.1:CDS
AACCGATGAAAATGAACATT+TGG	0.389298	5:+12655777	MsaT025780.1:CDS
TATTCAGGTTTACCAATTCA+TGG	0.394690	5:+12650066	MsaT025780.1:CDS
GACAGTGACTACTAGCATAT+TGG	0.397259	5:-12650151	None:intergenic
AGGCATGGAGGGACTGGTCT+AGG	0.397957	5:+12654585	MsaT025780.1:intron
ACCATAAGCTTGAAGTCAAT+TGG	0.402673	5:-12656743	None:intergenic
CCCTTTCAACTCATCAAGCT+TGG	0.402852	5:+12651426	MsaT025780.1:CDS
GCTATGTTGATCAAATCTTC+TGG	0.404417	5:-12651548	None:intergenic
ACTTGCTCAGCTTGAGATGC+AGG	0.406924	5:-12650572	None:intergenic
GTACAAGATTCTTCTTCCCT+TGG	0.408031	5:-12655811	None:intergenic
TGGAAAATTCTTCTACCTCT+TGG	0.415464	5:-12650104	None:intergenic
ATGAGGCAACAAAAGCAATA+AGG	0.417051	5:+12656606	MsaT025780.1:CDS
TCCACAGCCATCTTAAGCTT+TGG	0.417058	5:-12651851	None:intergenic
AACACAGAATCCCATTTGCT+TGG	0.417471	5:-12654244	None:intergenic
TAGTTAGAGGTGACTCTGGC+AGG	0.423741	5:+12653704	MsaT025780.1:CDS
GAGATAACAAAGTGATACTT+TGG	0.425255	5:+12654085	MsaT025780.1:CDS
TGGGATGACAAAACAATTCA+TGG	0.425736	5:+12651446	MsaT025780.1:CDS
TTTGACAGACAATGGCTTAG+TGG	0.429155	5:+12655010	MsaT025780.1:CDS
CTCCAATGGGCAATAAATAT+AGG	0.429398	5:+12650027	None:intergenic
TGTGGTTAGATTAGCAATCA+TGG	0.432976	5:+12650196	MsaT025780.1:CDS
TACACTATATAGGTGGAGTC+TGG	0.435729	5:+12653278	MsaT025780.1:intron
TTTGATCCTAATGGATTGTC+AGG	0.439291	5:+12656155	MsaT025780.1:CDS
ATACCAAGAAAGTATATTAT+GGG	0.440163	5:+12652504	MsaT025780.1:CDS
AAACTTGAAGAGACTTCCTT+TGG	0.443045	5:+12652015	MsaT025780.1:CDS
TCTTTGCATCGTTAGGAACT+TGG	0.444026	5:+12654608	MsaT025780.1:CDS
TAGGTATCGATCCAAGCAAA+TGG	0.444365	5:+12654233	MsaT025780.1:intron
CCTTTCAACTCATCAAGCTT+GGG	0.447280	5:+12651427	MsaT025780.1:CDS
TTAGGATCAAATCATATTGA+TGG	0.448278	5:-12656143	None:intergenic
GATATGCCAAAATTAGTTAG+AGG	0.449305	5:+12653691	MsaT025780.1:CDS
TATTTCAGGCATGGAGGGAC+TGG	0.458163	5:+12654579	MsaT025780.1:intron
TCGGAAAGGACACTTACTAA+TGG	0.460922	5:+12655552	MsaT025780.1:CDS
AAGCATCCATGCCAACCTTA+AGG	0.465093	5:-12656709	None:intergenic
TACCTATATTTATTGCCCAT+TGG	0.466197	5:-12650029	None:intergenic
ATATTCCACATCCTCAAAAT+CGG	0.469359	5:-12650476	None:intergenic
TGGTTTAGTGAGTGAGAGAA+TGG	0.469497	5:-12656771	None:intergenic
CTTGCACTACAAGGCAATAT+GGG	0.472560	5:+12655172	MsaT025780.1:CDS
CATTATCCAATAAATCTTGA+AGG	0.473443	5:+12655334	MsaT025780.1:CDS
GGCTATTGACCATATTAACT+TGG	0.482200	5:+12650378	MsaT025780.1:CDS
TTTAGCTTTGTTGTCTTCAG+AGG	0.483395	5:-12655833	None:intergenic
AGGAAATCAGAGGAAGGAAC+AGG	0.483804	5:+12656626	MsaT025780.1:CDS
CTTCATCACAAGACATTGCA+TGG	0.484352	5:-12656679	None:intergenic
ATAACAATCAATTACAAGAA+TGG	0.485356	5:+12651296	MsaT025780.1:CDS
TGTATGACAGTCATGAACTA+AGG	0.486515	5:+12653000	MsaT025780.1:intron
CAGGTATTGCTTGCACTACA+AGG	0.486574	5:+12655163	MsaT025780.1:intron
TGATGAAGCCAAATGCCTTA+AGG	0.487966	5:+12656694	MsaT025780.1:CDS
TTTGTCATTGTTGTTGACAT+TGG	0.490082	5:+12655403	MsaT025780.1:CDS
GCCAAAGATGGATGGATATG+AGG	0.491952	5:+12656589	MsaT025780.1:CDS
AAAAGTATTATGGCTGTTGT+TGG	0.492363	5:+12651680	MsaT025780.1:CDS
CTCTTCCGAAATACTTGTGA+AGG	0.492381	5:-12655471	None:intergenic
AATGATAAGAAATCACTTGA+GGG	0.496123	5:+12655913	MsaT025780.1:CDS
CCATAAAGACGGAGCTTCGT+CGG	0.496665	5:+12655533	MsaT025780.1:CDS
GTTGTTGTTGCTGTAGGTGA+TGG	0.497897	5:+12656012	MsaT025780.1:CDS
CCAAGCTTGATGAGTTGAAA+GGG	0.499413	5:-12651426	None:intergenic
ACAGCCATCTTAAGCTTTGG+TGG	0.499420	5:-12651848	None:intergenic
TTCATACCTGACAATCCATT+AGG	0.501681	5:-12656161	None:intergenic
TAAGATGGGTGGAGAAATCA+AGG	0.502216	5:+12654899	MsaT025780.1:CDS
GCCATCTTAAGCTTTGGTGG+TGG	0.502735	5:-12651845	None:intergenic
GATACTTTGGTTTGAAGTTG+AGG	0.505428	5:+12654098	MsaT025780.1:CDS
ACTTGGGACGCGAACTTGAA+GGG	0.507406	5:+12653330	MsaT025780.1:CDS
GTCTAGGTCTTTGCATCGTT+AGG	0.507867	5:+12654601	MsaT025780.1:CDS
TGCCATGTAGCTACACCATC+CGG	0.509110	5:-12651587	None:intergenic
AGTGGTTGCAGAGAACTTAT+GGG	0.510065	5:+12651906	MsaT025780.1:CDS
TTATTAGAAGAATCCCAAAC+AGG	0.512019	5:-12651659	None:intergenic
CATGTTGAGAATGCTAAGCT+AGG	0.514123	5:+12651959	MsaT025780.1:CDS
GCTTTAAATTTGACAGACAA+TGG	0.517382	5:+12655002	MsaT025780.1:CDS
AAGATACACCAGTAATTCAA+AGG	0.521392	5:+12655956	MsaT025780.1:CDS
TATTAAGCATCAAAGATATG+AGG	0.523932	5:+12655371	MsaT025780.1:CDS
TTCTGAAATTACAACAGCTC+AGG	0.525125	5:+12650511	MsaT025780.1:CDS
AAGAAAGTATATTATGGGAC+AGG	0.526754	5:+12652509	MsaT025780.1:CDS
TTCCGGATGGTGTAGCTACA+TGG	0.528222	5:+12651585	MsaT025780.1:CDS
GAAGTTGAGGACACAGGCTG+TGG	0.528521	5:+12654111	MsaT025780.1:CDS
TGGGCTGTTAGAGCAACAAT+TGG	0.530197	5:-12656659	None:intergenic
TTTGCTTCTTAGTGCACCAA+TGG	0.532448	5:+12654962	MsaT025780.1:CDS
AAGACGGAGCTTCGTCGGAA+AGG	0.533943	5:+12655538	MsaT025780.1:CDS
TTACTTATTTCAGGCATGGA+GGG	0.534505	5:+12654574	MsaT025780.1:intron
TGGATGGCAGGTTAATAAGA+TGG	0.537101	5:+12654884	MsaT025780.1:intron
AGATCTTTCAAATTACTCCA+TGG	0.538971	5:+12651376	MsaT025780.1:CDS
GGAGCTGTTGTTGTTGCTGT+AGG	0.539267	5:+12656006	MsaT025780.1:CDS
GGATGGCAGGTTAATAAGAT+GGG	0.539780	5:+12654885	MsaT025780.1:intron
GACTTGGGACGCGAACTTGA+AGG	0.541648	5:+12653329	MsaT025780.1:CDS
ATTGACAAATGGAGTGTCAA+AGG	0.544031	5:+12652617	MsaT025780.1:CDS
AGGTATCGATCCAAGCAAAT+GGG	0.547486	5:+12654234	MsaT025780.1:intron
TGTTGCTCTGTGACATCCAT+TGG	0.548514	5:-12654978	None:intergenic
CCCAAGCTTGATGAGTTGAA+AGG	0.549150	5:-12651427	None:intergenic
AAGGGACTTGACCATGTTTG+AGG	0.549611	5:-12651408	None:intergenic
AATTAGATGCCAAAGATGGA+TGG	0.551523	5:+12656581	MsaT025780.1:intron
GCCACCACCAAAGCTTAAGA+TGG	0.552183	5:+12651844	MsaT025780.1:CDS
GGAAAATTAGATGCCAAAGA+TGG	0.561731	5:+12656577	MsaT025780.1:intron
AATCCAATTACTGCTGCCAT+AGG	0.562131	5:-12653026	None:intergenic
TAATGTTAGCCATCTTGATA+GGG	0.562447	5:+12650357	MsaT025780.1:CDS
TCATGAACTAAGGACACCTA+TGG	0.568676	5:+12653010	MsaT025780.1:CDS
TCATTGAGTAGTTTGGCGTA+TGG	0.569196	5:+12650428	MsaT025780.1:CDS
GCACAATGGAAGCATCTGAA+TGG	0.570506	5:+12655236	MsaT025780.1:CDS
ATGGAAGCATCTGAATGGAA+TGG	0.570666	5:+12655241	MsaT025780.1:CDS
TGCAACACAAGCTTATGATA+GGG	0.572109	5:+12655867	MsaT025780.1:CDS
TAAGTCAACTTGAAGCAAGA+AGG	0.572906	5:+12652664	MsaT025780.1:CDS
CCAATATGTTGTTAAGAAGA+CGG	0.575002	5:-12653136	None:intergenic
AGATACACCAGTAATTCAAA+GGG	0.575176	5:+12655957	MsaT025780.1:CDS
GAAGATTTGATCAACATAGC+AGG	0.577289	5:+12651551	MsaT025780.1:CDS
AAATTAGTTAGAGGTGACTC+TGG	0.577940	5:+12653700	MsaT025780.1:CDS
GTCAATTCCTCGCAAACATG+AGG	0.578094	5:+12652715	MsaT025780.1:CDS
ATCTCAAGCTGAGCAAGTTG+AGG	0.579080	5:+12650577	MsaT025780.1:CDS
AAAGTATATTATGGGACAGG+TGG	0.583780	5:+12652512	MsaT025780.1:CDS
GAATGATAAGAAATCACTTG+AGG	0.584649	5:+12655912	MsaT025780.1:CDS
ACCAAAGCTTAAGATGGCTG+TGG	0.586674	5:+12651850	MsaT025780.1:CDS
GTCATGTTATTCTACGAGGA+TGG	0.588078	5:+12653941	MsaT025780.1:CDS
ATGTTGAGAATGCTAAGCTA+GGG	0.588292	5:+12651960	MsaT025780.1:CDS
TCGGAAGAGCAAAATTTGTG+TGG	0.588656	5:+12655485	MsaT025780.1:CDS
GGTCAATAGCCCTATCAAGA+TGG	0.588935	5:-12650366	None:intergenic
GAAGCCAAATGCCTTAAGGT+TGG	0.589210	5:+12656698	MsaT025780.1:CDS
TCAACTTGAAGCAAGAAGGA+AGG	0.590551	5:+12652668	MsaT025780.1:CDS
TGAAGCAAGAAGGAAGGCAG+AGG	0.592213	5:+12652674	MsaT025780.1:CDS
AGAAGATGCAGAATTCGACT+TGG	0.592480	5:+12653313	MsaT025780.1:CDS
GGTTGCATCAACCTCAAACA+TGG	0.597197	5:+12651397	MsaT025780.1:CDS
TGGCAGGTTAATAAGATGGG+TGG	0.597564	5:+12654888	MsaT025780.1:intron
GAAGATGATATAATAAGACT+TGG	0.598140	5:+12651878	MsaT025780.1:CDS
CACATCAAATACCATAAAGA+CGG	0.600188	5:+12655522	MsaT025780.1:CDS
AATTGAGAATCATACCAGAA+AGG	0.600279	5:-12653409	None:intergenic
ATTTGGAAGAAAATAATCCA+AGG	0.600592	5:+12655794	MsaT025780.1:CDS
AAGCAATGAGGGCAGTAACA+TGG	0.603356	5:+12651240	MsaT025780.1:CDS
GAACCACTTGATCCTGTCAC+AGG	0.609145	5:+12651494	MsaT025780.1:CDS
TGGTTTGAAGTTGAGGACAC+AGG	0.609745	5:+12654105	MsaT025780.1:CDS
GCAGCTATATGAAGCAATGA+GGG	0.611384	5:+12651229	MsaT025780.1:intron
TAGAAGAGAGTCTCTCCAGA+AGG	0.615474	5:+12656083	MsaT025780.1:CDS
TTAGTCGAATTTGTAAGTAA+CGG	0.616052	5:-12651821	None:intergenic
CAACATATTGGATCTAAGCA+AGG	0.617392	5:+12653148	MsaT025780.1:CDS
CAAATGCCTTAAGGTTGGCA+TGG	0.617547	5:+12656703	MsaT025780.1:CDS
TCGCCTGTGACAGGATCAAG+TGG	0.620643	5:-12651497	None:intergenic
GGTAAAGCTGCCGAAAGCAA+AGG	0.621545	5:-12651638	None:intergenic
AAAAGCAATAAGGAAATCAG+AGG	0.621819	5:+12656616	MsaT025780.1:CDS
TTCATCACAAGACATTGCAT+GGG	0.622262	5:-12656678	None:intergenic
GCAATAAGGAAATCAGAGGA+AGG	0.623445	5:+12656620	MsaT025780.1:CDS
TTTGGAAGAAAATAATCCAA+GGG	0.626055	5:+12655795	MsaT025780.1:CDS
AAACAAACCTCATGTTTGCG+AGG	0.629296	5:-12652722	None:intergenic
AGCAGCTATATGAAGCAATG+AGG	0.636477	5:+12651228	MsaT025780.1:intron
TTTACTTATTTCAGGCATGG+AGG	0.638874	5:+12654573	MsaT025780.1:intron
GAGTTAGTTGAGATGCATAG+TGG	0.639051	5:+12651743	MsaT025780.1:CDS
AGTTAGAGGTGACTCTGGCA+GGG	0.641913	5:+12653705	MsaT025780.1:CDS
GAAGATGCAGAATTCGACTT+GGG	0.643061	5:+12653314	MsaT025780.1:CDS
TAGAGGTGACTCTGGCAGGG+TGG	0.646259	5:+12653708	MsaT025780.1:CDS
GGACTTTCACAAGTTCCGGA+TGG	0.648808	5:+12651572	MsaT025780.1:CDS
GTTTGAGGTTGATGCAACCA+TGG	0.651337	5:-12651393	None:intergenic
ATGATAAGAAATCACTTGAG+GGG	0.670799	5:+12655914	MsaT025780.1:CDS
GTAGAATAATAACATCGAAG+TGG	0.676676	5:+12655194	MsaT025780.1:CDS
TAATAAGACTTGGAGCTGAG+TGG	0.679941	5:+12651888	MsaT025780.1:CDS
AAGAAAAGTAACTCACCAAG+AGG	0.687749	5:+12650089	MsaT025780.1:CDS
AGGTGATGGACAACAAGCAG+TGG	0.694466	5:+12656026	MsaT025780.1:CDS
AAGCTTATGATAGGGTGACA+AGG	0.699339	5:+12655875	MsaT025780.1:CDS
ATGTATTTGACTTCTCAACA+AGG	0.699506	5:+12651770	MsaT025780.1:CDS
GCTGGTCATGTTATTCTACG+AGG	0.758554	5:+12653937	MsaT025780.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	12650032	12656802	12650032	ID=MsaG025780
Chr5	mRNA	12650032	12656802	12650032	ID=MsaT025780.1;Parent=MsaG025780
Chr5	exon	12650032	12650217	12650032	ID=MsaT025780.1.exon1;Parent=MsaT025780.1
Chr5	CDS	12650032	12650217	12650032	ID=cds.MsaT025780.1;Parent=MsaT025780.1
Chr5	exon	12650356	12650598	12650356	ID=MsaT025780.1.exon2;Parent=MsaT025780.1
Chr5	CDS	12650356	12650598	12650356	ID=cds.MsaT025780.1;Parent=MsaT025780.1
Chr5	exon	12651233	12652036	12651233	ID=MsaT025780.1.exon3;Parent=MsaT025780.1
Chr5	CDS	12651233	12652036	12651233	ID=cds.MsaT025780.1;Parent=MsaT025780.1
Chr5	exon	12652489	12652736	12652489	ID=MsaT025780.1.exon4;Parent=MsaT025780.1
Chr5	CDS	12652489	12652736	12652489	ID=cds.MsaT025780.1;Parent=MsaT025780.1
Chr5	exon	12653010	12653169	12653010	ID=MsaT025780.1.exon5;Parent=MsaT025780.1
Chr5	CDS	12653010	12653169	12653010	ID=cds.MsaT025780.1;Parent=MsaT025780.1
Chr5	exon	12653290	12653416	12653290	ID=MsaT025780.1.exon6;Parent=MsaT025780.1
Chr5	CDS	12653290	12653416	12653290	ID=cds.MsaT025780.1;Parent=MsaT025780.1
Chr5	exon	12653689	12653778	12653689	ID=MsaT025780.1.exon7;Parent=MsaT025780.1
Chr5	CDS	12653689	12653778	12653689	ID=cds.MsaT025780.1;Parent=MsaT025780.1
Chr5	exon	12653938	12654132	12653938	ID=MsaT025780.1.exon8;Parent=MsaT025780.1
Chr5	CDS	12653938	12654132	12653938	ID=cds.MsaT025780.1;Parent=MsaT025780.1
Chr5	exon	12654236	12654305	12654236	ID=MsaT025780.1.exon9;Parent=MsaT025780.1
Chr5	CDS	12654236	12654305	12654236	ID=cds.MsaT025780.1;Parent=MsaT025780.1
Chr5	exon	12654587	12654629	12654587	ID=MsaT025780.1.exon10;Parent=MsaT025780.1
Chr5	CDS	12654587	12654629	12654587	ID=cds.MsaT025780.1;Parent=MsaT025780.1
Chr5	exon	12654894	12655031	12654894	ID=MsaT025780.1.exon11;Parent=MsaT025780.1
Chr5	CDS	12654894	12655031	12654894	ID=cds.MsaT025780.1;Parent=MsaT025780.1
Chr5	exon	12655166	12656176	12655166	ID=MsaT025780.1.exon12;Parent=MsaT025780.1
Chr5	CDS	12655166	12656176	12655166	ID=cds.MsaT025780.1;Parent=MsaT025780.1
Chr5	exon	12656587	12656802	12656587	ID=MsaT025780.1.exon13;Parent=MsaT025780.1
Chr5	CDS	12656587	12656802	12656587	ID=cds.MsaT025780.1;Parent=MsaT025780.1

Gene Sequence

>MsaT025780.1

ATGGGCAATAAATATAGGTACATGTTTAATAGACTATTCAGGTTTACCAATTCATGGAAGAAAAGTAACTCACCAAGAGGTAGAAGAATTTTCCACAGAGATGTTGAAAAAGAAGAATTCCAATATGCTAGTAGTCACTGTCTTTCATCCTACTACAGTGTTTTTGTGGTTAGATTAGCAATCATGGTAATGTTAGCCATCTTGATAGGGCTATTGACCATATTAACTTGGCATTTCACAAAGATTTATACGAAAAAATCATTGAGTAGTTTGGCGTATGGTCTGCGTTATGAACTTCTGCAACGTCCGATTTTGAGGATGTGGAATATTTTGAATTCTACTTCTGAAATTACAACAGCTCAGGTCAAGTTGTCTCAATATGTGATCAGACGTTATAGCAATCCTGCATCTCAAGCTGAGCAAGTTGAGCTATATGAAGCAATGAGGGCAGTAACATGGTCACTATTTGCTAGTAGAAAAGCACTAAACTCAATAACAATCAATTACAAGAATGGATTTGTTCAAGCATTCCATAGAGATCTAAAAGATAACAACACATTTTACATCTACTCAGATCTTTCAAATTACTCCATGGTTGCATCAACCTCAAACATGGTCAAGTCCCTTTCAACTCATCAAGCTTGGGATGACAAAACAATTCATGGTAACTTTTCAGCAATTTGGTATAGAGAACCACTTGATCCTGTCACAGGCGAAAAAATCGGAAAAGCAATGAAAATTGCACCAGAAGATTTGATCAACATAGCAGGACTTTCACAAGTTCCGGATGGTGTAGCTACATGGCATGTAGCAGTTAGTAAATTTACAGATTCGCCTTTGCTTTCGGCAGCTTTACCTGTTTGGGATTCTTCTAATAAAAGTATTATGGCTGTTGTTGGTGTTACAACTGCATTTTATAGTGTCGGACAGTTAATGAGAGAGTTAGTTGAGATGCATAGTGGTCACATGTATTTGACTTCTCAACAAGGCTATTTACTTGCAACTTCTACTAGTGCACCGTTACTTACAAATTCGACTAAGCCACCACCAAAGCTTAAGATGGCTGTGGATTGTGAAGATGATATAATAAGACTTGGAGCTGAGTGGTTGCAGAGAACTTATGGGAATCATTTTCCTAATTCAACTCATGAGGTTCATGTTGAGAATGCTAAGCTAGGGAATCAGCAATATTATATTGACTCGTTCTACCTAAACTTGAAGAGACTTCCTTTGGTAGGCGTAATCATCATACCAAGAAAGTATATTATGGGACAGGTGGATGAAAGATCTTTCAAAACTTTGGTTATTCTGATATCTGCATCTTTATGCATTTTTGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTGTCAAAGGAAATGAATCTGAGAGCAGAACTGATAAGTCAACTTGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAATTATAAAAGTCAATTCCTCGCAAACATGAGTCATGAACTAAGGACACCTATGGCAGCAGTAATTGGATTGCTTGATATTCTTATATCTGATGATTGTCTCACAAATGAACAATATTCAACAGTTACTCAAATAAGAAAATGTTCAACAGCTCTACTCCGTCTTCTTAACAACATATTGGATCTAAGCAAGGTGGAGTCTGGAAAACTTGTACTAGAAGATGCAGAATTCGACTTGGGACGCGAACTTGAAGGGCTTGTAGATATGTTTTCTGTTCAGTGCATTAATCACAATGTAGAGACTGTTTTAGACCTTTCTGATGATATGCCAAAATTAGTTAGAGGTGACTCTGGCAGGGTGGTTCAAGTATTTGCAAATTTGATCAACAATTCAATTAAGTTTACTACATCTGGTCATGTTATTCTACGAGGATGGTGTGAATATCCAAACTCTTGCAACGATAGTCCGAATTTTTATCTTGATCAGAAGAAATCAAGAAATTTACATAAGAGCAAAGAGAAGCCAAATGCAAGTCATGCAAAGAGAATATCTATGAGAGATAACAAAGTGATACTTTGGTTTGAAGTTGAGGACACAGGCTGTGGTATCGATCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGGACTGGTCTAGGTCTTTGCATCGTTAGGAACTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTACCAAAAAGGAGGGTCAGGGAACATTGATGAGATTATGTTTGCTTCTTAGTGCACCAATGGATGTCACAGAGCAACATGCTTTAAATTTGACAGACAATGGCTTAGTGGTATTGCTTGCACTACAAGGCAATATGGGTAGAATAATAACATCGAAGTGGTTAACCAAAAAAGGGGTGTGCACAATGGAAGCATCTGAATGGAATGGACTAACACAAATTTTGAGGGAACTCTTTCATGCAAGAAGTTCAATCCATAACAATAACAACTTTGATGCACATTATCCAATAAATCTTGAAGGATTTAAGTCTAAACTATTAAGCATCAAAGATATGAGGAATCCAATTTTTGTCATTGTTGTTGACATTGGTTTGCTTGACTTAAGCACAGATATATGGAAAGAACAACTTAACTTCCTTCACAAGTATTTCGGAAGAGCAAAATTTGTGTGGATTCTGAATCATGACACATCAAATACCATAAAGACGGAGCTTCGTCGGAAAGGACACTTACTAATGGTTAACAAACCTCTATACAAAGCAAAAATGATTCATATTTTGGAAGCTGTTATAAAAGAGAGAAATCTTGAGTTACAAAAGAAAAACATGAAAGAGGGTGATTTGCATGAGTTTCTTGAGATTGATTCTACTCATTTTGAAGCTGCTACTAGCTCTGATGATTCTGATATATCTGAAATTAGTGAAAAACCAATTTTAAAGTTAACCGATGAAAATGAACATTTGGAAGAAAATAATCCAAGGGAAGAAGAATCTTGTACCTCTGAAGACAACAAAGCTAAAGAAACAAACTTTGCAACACAAGCTTATGATAGGGTGACAAGGTCAAGAAAAGAAGTGAATGATAAGAAATCACTTGAGGGGTTAAGGATTTTGCTTGCAGAAGATACACCAGTAATTCAAAGGGTTGCAACAATAATGCTTGAAAAAATGGGAGCTGTTGTTGTTGCTGTAGGTGATGGACAACAAGCAGTGGATGCTCTTAATTATATGGTAAGTGCTGAAGATTGTAGAAGAGAGTCTCTCCAGAAGGATAGAAATACAAGATCACAGACAGAGATTTTAACTTGCCATCAATATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAGGCAACAAAAGCAATAAGGAAATCAGAGGAAGGAACAGGCAAACACATACCAATTGTTGCTCTAACAGCCCATGCAATGTCTTGTGATGAAGCCAAATGCCTTAAGGTTGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGCTTATGGTCTCAACCATTCTCTCACTCACTAAACCAACAACCTAG

Protein sequence

>MsaT025780.1

MGNKYRYMFNRLFRFTNSWKKSNSPRGRRIFHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTKKSLSSLAYGLRYELLQRPILRMWNILNSTSEITTAQVKLSQYVIRRYSNPASQAEQVELYEAMRAVTWSLFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMVASTSNMVKSLSTHQAWDDKTIHGNFSAIWYREPLDPVTGEKIGKAMKIAPEDLINIAGLSQVPDGVATWHVAVSKFTDSPLLSAALPVWDSSNKSIMAVVGVTTAFYSVGQLMRELVEMHSGHMYLTSQQGYLLATSTSAPLLTNSTKPPPKLKMAVDCEDDIIRLGAEWLQRTYGNHFPNSTHEVHVENAKLGNQQYYIDSFYLNLKRLPLVGVIIIPRKYIMGQVDERSFKTLVILISASLCIFVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQVFANLINNSIKFTTSGHVILRGWCEYPNSCNDSPNFYLDQKKSRNLHKSKEKPNASHAKRISMRDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVTKKEGQGTLMRLCLLLSAPMDVTEQHALNLTDNGLVVLLALQGNMGRIITSKWLTKKGVCTMEASEWNGLTQILRELFHARSSIHNNNNFDAHYPINLEGFKSKLLSIKDMRNPIFVIVVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWILNHDTSNTIKTELRRKGHLLMVNKPLYKAKMIHILEAVIKERNLELQKKNMKEGDLHEFLEIDSTHFEAATSSDDSDISEISEKPILKLTDENEHLEENNPREEESCTSEDNKAKETNFATQAYDRVTRSRKEVNDKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVDALNYMVSAEDCRRESLQKDRNTRSQTEILTCHQYDLILMDCQMPKMDGYEATKAIRKSEEGTGKHIPIVALTAHAMSCDEAKCLKVGMDAYLTKPIDFKLMVSTILSLTKPTT*