Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025911 | XP_003612370.1 | 99.103 | 446 | 4 | 0 | 1 | 446 | 1 | 446 | 0.0 | 924 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025911 | sp|Q45FA5|SRPK_PHYPO | 45.946 | 407 | 202 | 7 | 10 | 414 | 29 | 419 | 4.83e-115 | 347 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025911 | tr|G7K189|G7K189_MEDTR | 99.103 | 446 | 4 | 0 | 1 | 446 | 1 | 446 | 0.0 | 924 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025911 | MtrunA17_Chr5g0407121 | 99.103 | 446 | 4 | 0 | 1 | 446 | 1 | 446 | 0.0 | 924 |
MsaG025911 | MtrunA17_Chr8g0370321 | 82.287 | 446 | 75 | 2 | 1 | 446 | 1 | 442 | 0.0 | 743 |
MsaG025911 | MtrunA17_Chr1g0179611 | 53.066 | 473 | 162 | 6 | 2 | 415 | 8 | 479 | 1.29e-174 | 500 |
MsaG025911 | MtrunA17_Chr2g0320631 | 48.450 | 516 | 186 | 5 | 6 | 442 | 8 | 522 | 4.46e-169 | 486 |
MsaG025911 | MtrunA17_Chr4g0027671 | 51.496 | 468 | 162 | 5 | 12 | 415 | 13 | 479 | 2.22e-168 | 484 |
MsaG025911 | MtrunA17_Chr3g0139371 | 31.266 | 387 | 196 | 10 | 37 | 414 | 73 | 398 | 1.40e-43 | 157 |
MsaG025911 | MtrunA17_Chr3g0116701 | 27.970 | 404 | 219 | 10 | 21 | 414 | 78 | 419 | 3.05e-38 | 143 |
MsaG025911 | MtrunA17_Chr4g0058241 | 28.429 | 401 | 215 | 11 | 21 | 411 | 82 | 420 | 3.78e-37 | 140 |
MsaG025911 | MtrunA17_Chr3g0123491 | 28.117 | 409 | 216 | 12 | 21 | 415 | 77 | 421 | 7.67e-35 | 134 |
MsaG025911 | MtrunA17_Chr5g0437131 | 24.495 | 396 | 205 | 11 | 29 | 414 | 394 | 705 | 1.17e-23 | 103 |
MsaG025911 | MtrunA17_Chr8g0369241 | 40.000 | 145 | 81 | 3 | 37 | 180 | 138 | 277 | 3.45e-22 | 99.8 |
MsaG025911 | MtrunA17_Chr8g0369241 | 39.450 | 109 | 58 | 3 | 254 | 361 | 285 | 386 | 1.37e-13 | 73.2 |
MsaG025911 | MtrunA17_Chr6g0480541 | 31.953 | 169 | 100 | 5 | 252 | 414 | 1041 | 1200 | 5.38e-20 | 93.2 |
MsaG025911 | MtrunA17_Chr6g0480541 | 32.544 | 169 | 101 | 5 | 15 | 179 | 879 | 1038 | 2.39e-14 | 75.9 |
MsaG025911 | MtrunA17_Chr1g0210061 | 34.615 | 182 | 85 | 8 | 254 | 414 | 757 | 925 | 9.77e-15 | 76.6 |
MsaG025911 | MtrunA17_Chr1g0210061 | 30.814 | 172 | 100 | 5 | 11 | 177 | 592 | 749 | 3.70e-14 | 75.1 |
MsaG025911 | MtrunA17_Chr3g0140071 | 30.822 | 146 | 85 | 5 | 34 | 177 | 5 | 136 | 3.61e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG025911 | AT4G35500.1 | 73.094 | 446 | 108 | 4 | 1 | 443 | 1 | 437 | 0.0 | 656 |
MsaG025911 | AT2G17530.1 | 75.730 | 445 | 97 | 4 | 1 | 443 | 1 | 436 | 0.0 | 648 |
MsaG025911 | AT2G17530.3 | 75.730 | 445 | 97 | 4 | 1 | 443 | 1 | 436 | 0.0 | 648 |
MsaG025911 | AT4G35500.2 | 70.917 | 447 | 117 | 5 | 1 | 443 | 1 | 438 | 0.0 | 631 |
MsaG025911 | AT2G17530.2 | 79.592 | 343 | 67 | 3 | 1 | 341 | 1 | 342 | 0.0 | 518 |
MsaG025911 | AT3G53030.1 | 49.901 | 505 | 184 | 8 | 5 | 442 | 7 | 509 | 1.62e-170 | 489 |
MsaG025911 | AT3G44850.1 | 51.613 | 465 | 163 | 5 | 12 | 415 | 19 | 482 | 1.65e-163 | 472 |
MsaG025911 | AT5G22840.1 | 50.753 | 465 | 172 | 5 | 4 | 415 | 11 | 471 | 2.22e-163 | 471 |
MsaG025911 | AT4G32660.3 | 30.370 | 405 | 208 | 12 | 21 | 414 | 47 | 388 | 2.56e-42 | 154 |
MsaG025911 | AT4G32660.1 | 30.370 | 405 | 208 | 12 | 21 | 414 | 55 | 396 | 2.69e-42 | 154 |
MsaG025911 | AT4G24740.7 | 29.310 | 406 | 211 | 12 | 21 | 414 | 44 | 385 | 7.41e-39 | 145 |
MsaG025911 | AT4G24740.1 | 29.310 | 406 | 211 | 12 | 21 | 414 | 82 | 423 | 1.38e-38 | 145 |
MsaG025911 | AT4G32660.2 | 31.157 | 337 | 170 | 10 | 21 | 356 | 55 | 330 | 3.09e-38 | 142 |
MsaG025911 | AT4G24740.6 | 29.504 | 383 | 195 | 11 | 44 | 414 | 1 | 320 | 2.20e-37 | 139 |
MsaG025911 | AT4G24740.9 | 29.504 | 383 | 195 | 11 | 44 | 414 | 1 | 320 | 2.20e-37 | 139 |
MsaG025911 | AT4G24740.2 | 29.504 | 383 | 195 | 11 | 44 | 414 | 1 | 320 | 2.20e-37 | 139 |
MsaG025911 | AT3G53570.1 | 29.095 | 409 | 213 | 14 | 21 | 415 | 99 | 444 | 1.20e-35 | 137 |
MsaG025911 | AT3G53570.4 | 29.095 | 409 | 213 | 14 | 21 | 415 | 99 | 444 | 1.20e-35 | 137 |
MsaG025911 | AT3G53570.2 | 29.095 | 409 | 213 | 14 | 21 | 415 | 99 | 444 | 1.20e-35 | 137 |
MsaG025911 | AT3G53570.3 | 29.095 | 409 | 213 | 14 | 21 | 415 | 85 | 430 | 1.35e-35 | 137 |
MsaG025911 | AT3G53570.5 | 29.095 | 409 | 213 | 14 | 21 | 415 | 85 | 430 | 1.35e-35 | 137 |
MsaG025911 | AT4G24740.3 | 30.530 | 321 | 164 | 9 | 21 | 341 | 82 | 343 | 1.38e-34 | 132 |
MsaG025911 | AT4G24740.5 | 30.872 | 298 | 148 | 8 | 44 | 341 | 1 | 240 | 2.70e-33 | 126 |
MsaG025911 | AT4G32660.4 | 30.814 | 344 | 165 | 12 | 82 | 414 | 3 | 284 | 1.07e-32 | 125 |
MsaG025911 | AT4G24740.4 | 30.420 | 286 | 147 | 8 | 21 | 306 | 82 | 315 | 1.39e-28 | 115 |
MsaG025911 | AT5G35980.3 | 38.667 | 150 | 86 | 3 | 37 | 185 | 86 | 230 | 2.74e-22 | 100 |
MsaG025911 | AT5G35980.3 | 42.424 | 99 | 50 | 2 | 254 | 352 | 232 | 323 | 4.82e-15 | 78.2 |
MsaG025911 | AT5G35980.2 | 38.667 | 150 | 86 | 3 | 37 | 185 | 121 | 265 | 2.83e-22 | 100 |
MsaG025911 | AT5G35980.2 | 42.424 | 99 | 50 | 2 | 254 | 352 | 267 | 358 | 5.52e-15 | 77.8 |
MsaG025911 | AT5G35980.1 | 38.667 | 150 | 86 | 3 | 37 | 185 | 121 | 265 | 2.87e-22 | 100 |
MsaG025911 | AT5G35980.1 | 42.424 | 99 | 50 | 2 | 254 | 352 | 267 | 358 | 5.12e-15 | 78.2 |
MsaG025911 | AT4G24740.10 | 29.811 | 265 | 117 | 8 | 162 | 414 | 10 | 217 | 3.43e-21 | 92.0 |
MsaG025911 | AT4G24740.8 | 29.811 | 265 | 117 | 8 | 162 | 414 | 10 | 217 | 3.43e-21 | 92.0 |
MsaG025911 | AT1G73460.2 | 32.941 | 170 | 99 | 5 | 252 | 415 | 1001 | 1161 | 4.93e-21 | 97.1 |
MsaG025911 | AT1G73460.2 | 32.258 | 155 | 96 | 3 | 29 | 179 | 849 | 998 | 1.79e-13 | 73.6 |
MsaG025911 | AT1G73460.1 | 32.941 | 170 | 99 | 5 | 252 | 415 | 1001 | 1161 | 4.93e-21 | 97.1 |
MsaG025911 | AT1G73460.1 | 32.258 | 155 | 96 | 3 | 29 | 179 | 849 | 998 | 1.79e-13 | 73.6 |
MsaG025911 | AT1G73450.1 | 32.941 | 170 | 99 | 5 | 252 | 415 | 984 | 1144 | 5.32e-21 | 96.7 |
MsaG025911 | AT1G73450.1 | 32.258 | 155 | 96 | 3 | 29 | 179 | 832 | 981 | 1.89e-13 | 73.2 |
MsaG025911 | AT2G40120.1 | 24.311 | 399 | 212 | 12 | 29 | 419 | 252 | 568 | 1.33e-20 | 94.7 |
MsaG025911 | AT3G17750.1 | 31.953 | 169 | 100 | 5 | 252 | 414 | 970 | 1129 | 8.97e-18 | 86.7 |
MsaG025911 | AT3G17750.1 | 31.953 | 169 | 102 | 5 | 15 | 179 | 808 | 967 | 1.87e-13 | 73.2 |
MsaG025911 | AT3G53640.1 | 32.961 | 179 | 93 | 6 | 254 | 414 | 470 | 639 | 1.13e-16 | 82.8 |
MsaG025911 | AT3G53640.1 | 31.395 | 172 | 99 | 5 | 11 | 177 | 305 | 462 | 2.59e-12 | 69.3 |
MsaG025911 | AT1G13350.1 | 31.395 | 172 | 99 | 5 | 11 | 177 | 424 | 581 | 4.22e-14 | 75.1 |
MsaG025911 | AT1G13350.1 | 30.168 | 179 | 98 | 6 | 254 | 414 | 589 | 758 | 1.14e-13 | 73.9 |
MsaG025911 | AT1G13350.2 | 31.395 | 172 | 99 | 5 | 11 | 177 | 451 | 608 | 4.62e-14 | 75.1 |
MsaG025911 | AT1G13350.2 | 30.168 | 179 | 98 | 6 | 254 | 414 | 616 | 785 | 1.33e-13 | 73.6 |
MsaG025911 | AT3G12690.1 | 26.224 | 286 | 178 | 9 | 42 | 315 | 189 | 453 | 4.93e-14 | 74.7 |
MsaG025911 | AT3G12690.3 | 26.224 | 286 | 178 | 9 | 42 | 315 | 189 | 453 | 4.93e-14 | 74.7 |
MsaG025911 | AT3G12690.2 | 26.224 | 286 | 178 | 9 | 42 | 315 | 189 | 453 | 4.93e-14 | 74.7 |
MsaG025911 | AT1G13350.3 | 31.395 | 172 | 99 | 5 | 11 | 177 | 497 | 654 | 5.92e-14 | 74.7 |
MsaG025911 | AT1G13350.3 | 30.168 | 179 | 98 | 6 | 254 | 414 | 662 | 831 | 1.14e-13 | 73.9 |
MsaG025911 | AT3G25840.2 | 31.638 | 177 | 97 | 6 | 254 | 414 | 502 | 670 | 8.17e-14 | 73.9 |
MsaG025911 | AT3G25840.2 | 30.233 | 172 | 101 | 5 | 11 | 177 | 337 | 494 | 3.07e-12 | 69.3 |
MsaG025911 | AT3G25840.1 | 31.638 | 177 | 97 | 6 | 254 | 414 | 764 | 932 | 2.12e-13 | 73.2 |
MsaG025911 | AT3G25840.1 | 30.233 | 172 | 101 | 5 | 11 | 177 | 599 | 756 | 3.03e-12 | 69.3 |
MsaG025911 | AT3G20830.1 | 23.810 | 294 | 188 | 10 | 40 | 320 | 23 | 293 | 7.31e-12 | 67.4 |
MsaG025911 | AT1G04440.1 | 28.571 | 147 | 93 | 4 | 31 | 177 | 2 | 136 | 7.74e-11 | 64.3 |
Find 113 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGATGCAAGATTGTCGATTT+TGG | 0.222958 | 5:+14255887 | MsaT025911.1:CDS |
ACCGGCATGGTGATCTAAAA+AGG | 0.287476 | 5:+14256812 | MsaT025911.1:CDS |
ATAACCTTGTCCACCACCTT+TGG | 0.312925 | 5:-14256071 | None:intergenic |
TGCATGGTCCTTGAGTTTCT+TGG | 0.316560 | 5:+14255485 | MsaT025911.1:CDS |
TAACCTTGTCCACCACCTTT+GGG | 0.320820 | 5:-14256070 | None:intergenic |
CCTCAGTCCGTTCTAAAGTT+GGG | 0.329112 | 5:-14255712 | None:intergenic |
ATGTCTTGTTCTTCTTCATC+AGG | 0.333473 | 5:+14253950 | MsaT025911.1:CDS |
AGTTCAGCCAGGGGTGTTGC+AGG | 0.337595 | 5:-14256978 | None:intergenic |
ACTTTCCTACCTTGATTTGA+AGG | 0.337930 | 5:-14257071 | None:intergenic |
GGGGAGAGTCCGGATCTAAA+AGG | 0.349666 | 5:-14255692 | None:intergenic |
TCCGGATCTAAAAGGGTCTT+TGG | 0.351019 | 5:-14255684 | None:intergenic |
ATGCAATGGTGCTGCCCATT+TGG | 0.353666 | 5:-14255467 | None:intergenic |
TGGGAGTGTACTCACCTTCC+GGG | 0.362905 | 5:-14256690 | None:intergenic |
AAGTGCAGCCGAGTTTGTTC+AGG | 0.382307 | 5:+14255343 | MsaT025911.1:CDS |
GCGTGCAGTTGCTAAAATAT+CGG | 0.390478 | 5:+14255793 | MsaT025911.1:CDS |
GATTCATTTCTCATTTCATT+TGG | 0.391464 | 5:-14257015 | None:intergenic |
GCTTAAAGTTATCAATCAAT+TGG | 0.393123 | 5:-14255436 | None:intergenic |
ATCTCTCTAACTTTATTCAA+TGG | 0.394338 | 5:-14255554 | None:intergenic |
TGCTCAGAGGAAACTTGGTT+GGG | 0.402208 | 5:+14254066 | MsaT025911.1:CDS |
GATTACTTGCATAGTGAACT+TGG | 0.411710 | 5:+14255602 | MsaT025911.1:CDS |
CCCTCAGTCCGTTCTAAAGT+TGG | 0.414075 | 5:-14255713 | None:intergenic |
GGGGTCAATTCTCCACCGTT+TGG | 0.419364 | 5:+14254086 | MsaT025911.1:CDS |
TTTAAGCACACAGGTCCAAA+TGG | 0.425606 | 5:+14255452 | MsaT025911.1:CDS |
TGATTCATTGCAGTTCAGCC+AGG | 0.429978 | 5:-14256989 | None:intergenic |
TTCTAAAGTTGGGGAGAGTC+CGG | 0.433511 | 5:-14255702 | None:intergenic |
GGATCATCTTGCCTTGATGA+TGG | 0.437810 | 5:+14256649 | MsaT025911.1:intron |
TTACAAGTCTTATTGAGAAA+AGG | 0.437935 | 5:+14255753 | MsaT025911.1:CDS |
TGTGGATTGCAGATTGCAAT+TGG | 0.442014 | 5:+14256763 | MsaT025911.1:intron |
AAATGAATCTACTGTGGAAA+AGG | 0.456827 | 5:+14257029 | MsaT025911.1:CDS |
TATATTGCTCAGAGGAAACT+TGG | 0.462401 | 5:+14254061 | MsaT025911.1:CDS |
ACAACAAACTTTGAATTCGA+TGG | 0.467683 | 5:-14255413 | None:intergenic |
TTGTTCTTCTTCATCAGGAT+CGG | 0.468336 | 5:+14253955 | MsaT025911.1:CDS |
GGCAATACCTGCAACACCCC+TGG | 0.477580 | 5:+14256971 | MsaT025911.1:CDS |
TCAATGGAAGACCTTTGTAA+TGG | 0.483257 | 5:-14255538 | None:intergenic |
CGTGCAGTTGCTAAAATATC+GGG | 0.483843 | 5:+14255794 | MsaT025911.1:CDS |
GGAAGAACAGCTTCAATTGA+AGG | 0.486531 | 5:+14255815 | MsaT025911.1:CDS |
CCTGAAGTTATACTGAAGTC+TGG | 0.492577 | 5:+14255971 | MsaT025911.1:CDS |
AACTCCTCGGAAAGATGCCC+CGG | 0.493756 | 5:+14256672 | MsaT025911.1:CDS |
TTGCTCAGAGGAAACTTGGT+TGG | 0.496479 | 5:+14254065 | MsaT025911.1:CDS |
TTCTTTCAACCATTGCTGAT+GGG | 0.501024 | 5:+14255387 | MsaT025911.1:CDS |
GATTCATTGCAGTTCAGCCA+GGG | 0.507004 | 5:-14256988 | None:intergenic |
ATGCCGGTCAAAGTAATCCT+TGG | 0.507357 | 5:-14256797 | None:intergenic |
CCAGACTTCAGTATAACTTC+AGG | 0.509267 | 5:-14255971 | None:intergenic |
GTTCTTTCAACCATTGCTGA+TGG | 0.515507 | 5:+14255386 | MsaT025911.1:CDS |
TCCGAGGAGTTCCATCATCA+AGG | 0.521134 | 5:-14256660 | None:intergenic |
ACAGCTTCAATTGAAGGAAG+AGG | 0.522518 | 5:+14255821 | MsaT025911.1:CDS |
ATTGCTTTCGAGCTTGCCAC+TGG | 0.524146 | 5:+14256031 | MsaT025911.1:CDS |
CTCAGTCCGTTCTAAAGTTG+GGG | 0.526561 | 5:-14255711 | None:intergenic |
TCTTTCAACCATTGCTGATG+GGG | 0.528594 | 5:+14255388 | MsaT025911.1:CDS |
AATCCAAGGATTACTTTGAC+CGG | 0.528653 | 5:+14256794 | MsaT025911.1:CDS |
TATGAGCAACCTTCAAATCA+AGG | 0.531115 | 5:+14257062 | MsaT025911.1:CDS |
CAACAAACTTTGAATTCGAT+GGG | 0.538001 | 5:-14255412 | None:intergenic |
GGGAGAGTCCGGATCTAAAA+GGG | 0.543496 | 5:-14255691 | None:intergenic |
TTATTTACACCCAAAGGTGG+TGG | 0.545111 | 5:+14256061 | MsaT025911.1:CDS |
TGCAGGTATTGCCGTGCAGT+TGG | 0.547161 | 5:-14256961 | None:intergenic |
GGATTGCAGATTGCAATTGG+TGG | 0.549667 | 5:+14256766 | MsaT025911.1:intron |
ATGAGGGATTTGAGTCCTAT+CGG | 0.552054 | 5:+14253987 | MsaT025911.1:CDS |
TTAAGCACACAGGTCCAAAT+GGG | 0.558245 | 5:+14255453 | MsaT025911.1:CDS |
TCAATCAGCAATTTGTCAAG+TGG | 0.561218 | 5:-14256856 | None:intergenic |
CTGATCAATTCGCGGGTGGG+AGG | 0.561858 | 5:+14254038 | MsaT025911.1:CDS |
GATATGTTATTTACACCCAA+AGG | 0.565138 | 5:+14256055 | MsaT025911.1:CDS |
ACACCCAAAGGTGGTGGACA+AGG | 0.567008 | 5:+14256067 | MsaT025911.1:CDS |
TAGAGTCGCTGATCAATTCG+CGG | 0.570049 | 5:+14254030 | MsaT025911.1:CDS |
CCTTCCGGGGCATCTTTCCG+AGG | 0.576947 | 5:-14256676 | None:intergenic |
CGATGGGTCCCCATCAGCAA+TGG | 0.578011 | 5:-14255396 | None:intergenic |
TTCTTCTTCATCAGGATCGG+AGG | 0.578889 | 5:+14253958 | MsaT025911.1:CDS |
ATTCCTTCTCTGTAGACATG+TGG | 0.579312 | 5:+14255996 | MsaT025911.1:CDS |
ACAAGGTTATAGCGAGGATG+AGG | 0.579359 | 5:+14256084 | MsaT025911.1:CDS |
AAGGATTACTTTGACCGGCA+TGG | 0.580864 | 5:+14256799 | MsaT025911.1:CDS |
ACTGTGGAAAAGGTTAATGT+TGG | 0.582824 | 5:+14257039 | MsaT025911.1:CDS |
ATCAAATACAGCCATTACAA+AGG | 0.586492 | 5:+14255527 | MsaT025911.1:CDS |
ATTCATTGCAGTTCAGCCAG+GGG | 0.586651 | 5:-14256987 | None:intergenic |
AGGATCGGAGGAAGATGATG+AGG | 0.592202 | 5:+14253970 | MsaT025911.1:CDS |
GATCTAAAAGGGTCTTTGGA+AGG | 0.592260 | 5:-14255680 | None:intergenic |
GTCGCTGATCAATTCGCGGG+TGG | 0.594980 | 5:+14254034 | MsaT025911.1:CDS |
TCGCTGATCAATTCGCGGGT+GGG | 0.599945 | 5:+14254035 | MsaT025911.1:CDS |
ATTGATAACTTTAAGCACAC+AGG | 0.601668 | 5:+14255443 | MsaT025911.1:CDS |
TGTAAATAACATATCTCCAG+TGG | 0.603326 | 5:-14256047 | None:intergenic |
CGGACTGAGGGAAACACAAA+CGG | 0.603582 | 5:+14255725 | MsaT025911.1:CDS |
TTTCAGGCTTTAAGTCTGTG+TGG | 0.603818 | 5:-14255631 | None:intergenic |
AAATCAAGGTAGGAAAGTGA+AGG | 0.604919 | 5:+14257076 | MsaT025911.1:CDS |
GCTCAGAGGAAACTTGGTTG+GGG | 0.605080 | 5:+14254067 | MsaT025911.1:CDS |
AATTGGTGGAGCTCAATCCA+AGG | 0.608972 | 5:+14256780 | MsaT025911.1:CDS |
ATGGTATCCACCTTTCCGAT+AGG | 0.609356 | 5:-14254002 | None:intergenic |
AGACCACATGTCTACAGAGA+AGG | 0.609410 | 5:-14255999 | None:intergenic |
AGTCTAGTAGAAATATCGAC+GGG | 0.609550 | 5:+14255855 | MsaT025911.1:CDS |
AAATGGGCAGCACCATTGCA+TGG | 0.610699 | 5:+14255469 | MsaT025911.1:CDS |
AGAGTCGCTGATCAATTCGC+GGG | 0.611441 | 5:+14254031 | MsaT025911.1:CDS |
TTTGAGTCCTATCGGAAAGG+TGG | 0.621569 | 5:+14253995 | MsaT025911.1:CDS |
AAGTCTAGTAGAAATATCGA+CGG | 0.621748 | 5:+14255854 | MsaT025911.1:CDS |
AAAGAACGTTGATCTCGTGA+AGG | 0.622147 | 5:-14255370 | None:intergenic |
GGGAGTGTACTCACCTTCCG+GGG | 0.625406 | 5:-14256689 | None:intergenic |
AAGAACGTTGATCTCGTGAA+GGG | 0.630667 | 5:-14255369 | None:intergenic |
AAGGGCAGCCTGAACAAACT+CGG | 0.632337 | 5:-14255351 | None:intergenic |
AGTATCATAAGCAAGCCAAA+CGG | 0.632450 | 5:-14254101 | None:intergenic |
GAAACTCAAGGACCATGCAA+TGG | 0.636117 | 5:-14255481 | None:intergenic |
CCCAACTTTAGAACGGACTG+AGG | 0.637641 | 5:+14255712 | MsaT025911.1:CDS |
AGCAACCTTCAAATCAAGGT+AGG | 0.638879 | 5:+14257066 | MsaT025911.1:CDS |
GACTCTCCCCAACTTTAGAA+CGG | 0.639593 | 5:+14255705 | MsaT025911.1:CDS |
ATGTTATTTACACCCAAAGG+TGG | 0.642360 | 5:+14256058 | MsaT025911.1:CDS |
ATCATAAGCAAGCCAAACGG+TGG | 0.646324 | 5:-14254098 | None:intergenic |
CCTCGGAAAGATGCCCCGGA+AGG | 0.647925 | 5:+14256676 | MsaT025911.1:CDS |
GGATTTGAGTCCTATCGGAA+AGG | 0.650525 | 5:+14253992 | MsaT025911.1:CDS |
AGCTATCACCAAGAAACTCA+AGG | 0.651636 | 5:-14255493 | None:intergenic |
GGATCGGAGGAAGATGATGA+GGG | 0.654053 | 5:+14253971 | MsaT025911.1:CDS |
GCCTTGATGATGGAACTCCT+CGG | 0.654637 | 5:+14256659 | MsaT025911.1:CDS |
GATCAGCGACTCTAACAGCA+TGG | 0.659062 | 5:-14254021 | None:intergenic |
ATAAGAAGAACATACAGAGG+TGG | 0.667158 | 5:-14254125 | None:intergenic |
AATGAGAAATGAATCTACTG+TGG | 0.670154 | 5:+14257023 | MsaT025911.1:CDS |
CCAACTTTAGAACGGACTGA+GGG | 0.670163 | 5:+14255713 | MsaT025911.1:CDS |
ACTGAGGGAAACACAAACGG+TGG | 0.700333 | 5:+14255728 | MsaT025911.1:CDS |
TGGTGGACAAGGTTATAGCG+AGG | 0.709203 | 5:+14256078 | MsaT025911.1:CDS |
GTGGGAGGTATATTGCTCAG+AGG | 0.720598 | 5:+14254053 | MsaT025911.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 14253950 | 14257095 | 14253950 | ID=MsaG025911 |
Chr5 | mRNA | 14253950 | 14257095 | 14253950 | ID=MsaT025911.1;Parent=MsaG025911 |
Chr5 | exon | 14253950 | 14254132 | 14253950 | ID=MsaT025911.1.exon1;Parent=MsaT025911.1 |
Chr5 | CDS | 14253950 | 14254132 | 14253950 | ID=cds.MsaT025911.1;Parent=MsaT025911.1 |
Chr5 | exon | 14255317 | 14256105 | 14255317 | ID=MsaT025911.1.exon2;Parent=MsaT025911.1 |
Chr5 | CDS | 14255317 | 14256105 | 14255317 | ID=cds.MsaT025911.1;Parent=MsaT025911.1 |
Chr5 | exon | 14256650 | 14256697 | 14256650 | ID=MsaT025911.1.exon3;Parent=MsaT025911.1 |
Chr5 | CDS | 14256650 | 14256697 | 14256650 | ID=cds.MsaT025911.1;Parent=MsaT025911.1 |
Chr5 | exon | 14256775 | 14257095 | 14256775 | ID=MsaT025911.1.exon4;Parent=MsaT025911.1 |
Chr5 | CDS | 14256775 | 14257095 | 14256775 | ID=cds.MsaT025911.1;Parent=MsaT025911.1 |
Gene Sequence |
Protein sequence |