AlfalfaGEDB | MsaG025930

M. sativa ssp. caerulea / MsaG025930

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02042.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025930	XP_003612350.1	94.551	312	16	1	1	312	20	330	0.0	602

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025930	sp\|O81791\|RKD5_ARATH	51.133	309	123	9	1	294	59	354	1.34e-85	265

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025930	tr\|G7K041\|G7K041_MEDTR	94.551	312	16	1	1	312	20	330	0.0	602

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TFs/TRs:

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Gene ID	Type	Classification
MsaG025930	TF	RWP-RK

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025930	MtrunA17_Chr5g0406901	94.551	312	16	1	1	312	20	330	0.0	602
MsaG025930	MtrunA17_Chr3g0092141	37.037	135	77	2	162	295	38	165	1.42e-23	95.5
MsaG025930	MtrunA17_Chr4g0060761	39.062	128	74	1	173	300	146	269	3.99e-23	96.3
MsaG025930	MtrunA17_Chr3g0127001	38.400	125	59	2	171	295	148	254	6.72e-21	90.1
MsaG025930	MtrunA17_Chr1g0182631	38.346	133	62	3	163	295	115	227	9.11e-21	89.0
MsaG025930	MtrunA17_Chr3g0136081	48.276	87	40	2	180	264	414	497	1.45e-13	70.9
MsaG025930	MtrunA17_Chr3g0143921	45.122	82	41	2	158	237	570	649	9.45e-12	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG025930	AT4G35590.2	50.485	309	125	8	1	294	9	304	2.31e-87	265
MsaG025930	AT4G35590.1	51.133	309	123	9	1	294	59	354	1.36e-86	265
MsaG025930	AT1G74480.1	46.087	115	57	2	180	292	131	242	7.73e-24	99.4
MsaG025930	AT1G18790.1	44.628	121	61	3	175	293	120	236	8.36e-24	98.6
MsaG025930	AT5G66990.1	42.727	110	59	2	187	295	164	270	1.90e-21	92.4
MsaG025930	AT5G53040.1	42.609	115	53	1	181	295	147	248	3.71e-21	90.9
MsaG025930	AT5G16100.2	50.000	64	32	0	174	237	346	409	1.49e-13	71.2

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Find 60 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAAACATAGAGAAG+AGG	0.595516	5:+14487866	MsaT025930.1:CDS
AAAAGGAAGTGCAGAGAATT+TGG	0.277802	5:+14487476	MsaT025930.1:CDS
AAAGATGTTGGAAAGTGAAA+AGG	0.459498	5:+14487849	MsaT025930.1:CDS
AAAGATTACTTTATCAGATT+TGG	0.267461	5:+14487388	MsaT025930.1:CDS
AAATTGAGACCAAGAGATTC+AGG	0.445679	5:+14487905	MsaT025930.1:CDS
AACATCTTGCCTGAATCTCT+TGG	0.476779	5:-14487914	None:intergenic
AAGAGGCAAAACATCAGGAA+AGG	0.561722	5:+14487788	MsaT025930.1:CDS
AAGGGTATAAGAATGGAGTT+TGG	0.381031	5:+14485519	MsaT025930.1:CDS
AATCTTTGCAACATGGTCAC+TGG	0.527182	5:-14487372	None:intergenic
AATTGGCATATCAAAGTACT+TGG	0.507062	5:-14487411	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	14485368	14488014	14485368	ID=MsaG025930
Chr5	mRNA	14485368	14488014	14485368	ID=MsaT025930.1;Parent=MsaG025930
Chr5	exon	14485368	14485615	14485368	ID=MsaT025930.1.exon1;Parent=MsaT025930.1
Chr5	CDS	14485368	14485615	14485368	ID=cds.MsaT025930.1;Parent=MsaT025930.1
Chr5	exon	14486850	14487097	14486850	ID=MsaT025930.1.exon2;Parent=MsaT025930.1
Chr5	CDS	14486850	14487097	14486850	ID=cds.MsaT025930.1;Parent=MsaT025930.1
Chr5	exon	14487345	14487559	14487345	ID=MsaT025930.1.exon3;Parent=MsaT025930.1
Chr5	CDS	14487345	14487559	14487345	ID=cds.MsaT025930.1;Parent=MsaT025930.1
Chr5	exon	14487787	14488014	14487787	ID=MsaT025930.1.exon4;Parent=MsaT025930.1
Chr5	CDS	14487787	14488014	14487787	ID=cds.MsaT025930.1;Parent=MsaT025930.1

Gene Sequence

>MsaT025930.1

ATGAGAAGCGTGCATGTGTACCGTGAATGTGATGGAGGAGAAAAGGAAGTTGAAAGAGAGTTTGTGTTTTCTGAGAATGGTTCTTATGTTGAAATGAAAGCTACTCCAATTCTTAGGTTGTTGAAATCTTTTGTTTCTGAAGAGATTTTTGAAGGGTATAAGAATGGAGTTTGGCTTTGTGTTTTTGCTTTTCATGCTTGTAATGTCCCTCAATTTTCTCACATTCCAACCTTTTTGTTGGTTACAAGGAATCCAAAGCTTCAGGCCATTCCAAACCTGCTTAATGATCTCCACGTGATATACAAGTTGGAACCGAAGAAGGAACGAAAAGATACACCAGAGAGCTCTGCAAGGGAAGAATTGGAAGGAAACAACAATGATTTCCAACCACTAAAAAAAGTCTTGCCTGTGCTTAATCAGGATCTCAATTTTCTTCCTTATGAAGAAGACGAGGCTGAGTTACTGGATGATGAGACAAATTTTGAAAGTTCAGCAGGTTTTTTAGGAAAGAAAAAGAGGGCAGCCAGTGACCATGTTGCAAAGATTACTTTATCAGATTTGGCCAAGTACTTTGATATGCCAATTGCAGAAGCGTCAAAGAATCTAAATGTTGGGCTTACTGTTCTCAAAAGGAAGTGCAGAGAATTTGGTATTCCTCGCTGGCCTCATAGGAAGATCAAATCACTCGACAGTCTCATTCATGATCTTCAGGAAGAGGCAAAACATCAGGAAAGGGAGGATAAAGATGCAGCCATGGCAGTTATAAGGAGGCAAAAGATGTTGGAAAGTGAAAAGGAAAACATAGAGAAGAGGCCCTTCATGGACATACAAATTGAGACCAAGAGATTCAGGCAAGATGTTTTCAAGAGAAGGCACAGAGCCAGAGTTATTGAAAAACAGAATTTTCTACGGTTGGAAGCACCTAAACCTAGCAATTAG

Protein sequence

>MsaT025930.1

MRSVHVYRECDGGEKEVEREFVFSENGSYVEMKATPILRLLKSFVSEEIFEGYKNGVWLCVFAFHACNVPQFSHIPTFLLVTRNPKLQAIPNLLNDLHVIYKLEPKKERKDTPESSAREELEGNNNDFQPLKKVLPVLNQDLNFLPYEEDEAELLDDETNFESSAGFLGKKKRAASDHVAKITLSDLAKYFDMPIAEASKNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKHQEREDKDAAMAVIRRQKMLESEKENIEKRPFMDIQIETKRFRQDVFKRRHRARVIEKQNFLRLEAPKPSN*