Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG025980 | XP_021301164.1 | 71.061 | 622 | 143 | 6 | 35 | 620 | 51 | 671 | 0.0 | 895 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG025980 | sp|Q9FH80|BAM8_ARATH | 60.239 | 669 | 199 | 8 | 13 | 616 | 18 | 684 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG025980 | tr|G7K5E9|G7K5E9_MEDTR | 92.615 | 650 | 18 | 1 | 1 | 620 | 1 | 650 | 0.0 | 1250 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG025980 | TF | BES1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsaG007265 | MsaG025980 | 0.806667 | 1.247974e-49 | 1.967515e-47 |
| MsaG019134 | MsaG025980 | 0.800656 | 2.176634e-48 | 2.986967e-46 |
| MsaG019540 | MsaG025980 | 0.800786 | 2.047959e-48 | 2.818647e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG025980 | MtrunA17_Chr5g0408851 | 92.615 | 650 | 18 | 1 | 1 | 620 | 1 | 650 | 0.0 | 1250 |
| MsaG025980 | MtrunA17_Chr7g0247631 | 46.910 | 631 | 281 | 8 | 41 | 620 | 73 | 700 | 0.0 | 547 |
| MsaG025980 | MtrunA17_Chr4g0023601 | 39.695 | 393 | 203 | 5 | 217 | 577 | 12 | 402 | 6.86e-102 | 318 |
| MsaG025980 | MtrunA17_Chr2g0323051 | 37.011 | 435 | 235 | 5 | 217 | 614 | 85 | 517 | 1.04e-96 | 308 |
| MsaG025980 | MtrunA17_Chr5g0399991 | 33.693 | 463 | 259 | 9 | 189 | 614 | 59 | 510 | 1.36e-80 | 264 |
| MsaG025980 | MtrunA17_Chr5g0400001 | 34.305 | 446 | 245 | 9 | 205 | 614 | 75 | 508 | 1.16e-79 | 261 |
| MsaG025980 | MtrunA17_Chr4g0055281 | 32.871 | 505 | 293 | 12 | 139 | 607 | 4 | 498 | 1.31e-78 | 259 |
| MsaG025980 | MtrunA17_Chr6g0481031 | 35.550 | 391 | 213 | 8 | 218 | 572 | 106 | 493 | 7.88e-75 | 249 |
| MsaG025980 | MtrunA17_Chr2g0286431 | 31.806 | 371 | 221 | 7 | 218 | 558 | 83 | 451 | 1.87e-56 | 199 |
| MsaG025980 | MtrunA17_Chr8g0388651 | 31.340 | 418 | 246 | 9 | 219 | 597 | 80 | 495 | 1.08e-54 | 195 |
| MsaG025980 | MtrunA17_Chr1g0154651 | 51.351 | 74 | 35 | 1 | 50 | 122 | 14 | 87 | 2.20e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG025980 | AT5G45300.3 | 60.239 | 669 | 199 | 8 | 13 | 616 | 32 | 698 | 0.0 | 768 |
| MsaG025980 | AT5G45300.1 | 60.239 | 669 | 199 | 8 | 13 | 616 | 18 | 684 | 0.0 | 768 |
| MsaG025980 | AT5G45300.2 | 60.239 | 669 | 197 | 9 | 13 | 616 | 18 | 682 | 0.0 | 763 |
| MsaG025980 | AT2G45880.1 | 46.166 | 626 | 288 | 9 | 41 | 619 | 59 | 682 | 0.0 | 555 |
| MsaG025980 | AT4G00490.1 | 50.328 | 457 | 194 | 3 | 197 | 620 | 74 | 530 | 5.88e-165 | 483 |
| MsaG025980 | AT2G32290.1 | 39.091 | 440 | 230 | 6 | 211 | 614 | 71 | 508 | 4.60e-98 | 311 |
| MsaG025980 | AT4G15210.2 | 39.186 | 393 | 204 | 6 | 217 | 576 | 13 | 403 | 1.36e-92 | 292 |
| MsaG025980 | AT4G15210.1 | 38.386 | 409 | 212 | 7 | 217 | 587 | 13 | 419 | 4.20e-92 | 293 |
| MsaG025980 | AT4G17090.1 | 36.047 | 430 | 235 | 10 | 218 | 612 | 86 | 510 | 3.08e-84 | 274 |
| MsaG025980 | AT4G15210.3 | 38.043 | 368 | 189 | 6 | 257 | 587 | 1 | 366 | 2.29e-80 | 261 |
| MsaG025980 | AT4G15210.4 | 38.043 | 368 | 189 | 6 | 257 | 587 | 1 | 366 | 2.29e-80 | 261 |
| MsaG025980 | AT3G23920.1 | 34.951 | 412 | 227 | 9 | 218 | 590 | 106 | 515 | 1.43e-77 | 257 |
| MsaG025980 | AT5G55700.1 | 30.862 | 499 | 285 | 14 | 134 | 587 | 21 | 504 | 1.79e-64 | 221 |
| MsaG025980 | AT5G55700.2 | 35.556 | 315 | 190 | 6 | 284 | 587 | 29 | 341 | 2.40e-55 | 192 |
| MsaG025980 | AT5G18670.1 | 29.730 | 407 | 249 | 8 | 218 | 596 | 87 | 484 | 8.16e-50 | 181 |
Find 169 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGGTATTGGTGAGTTTC+AGG | 0.176787 | 5:-15413375 | MsaT025980.1:intron |
| AACAACACCATCAATATTTA+AGG | 0.189592 | 5:+15414629 | None:intergenic |
| CCGGTGATCAGGATCATTTC+TGG | 0.208369 | 5:+15410712 | None:intergenic |
| CAATATTTAAGGACTTAATA+TGG | 0.231011 | 5:+15414640 | None:intergenic |
| CTTATGCAAGATATTCATTC+TGG | 0.237659 | 5:-15414958 | MsaT025980.1:CDS |
| ACCCAGACCACACATATTTC+TGG | 0.247785 | 5:+15414568 | None:intergenic |
| AATATGTGTGGTCTGGGTAT+AGG | 0.294983 | 5:-15414563 | MsaT025980.1:CDS |
| GGTGATTATGACAACTATTA+TGG | 0.299107 | 5:-15413092 | MsaT025980.1:CDS |
| TCAGCAACAATCTTTGCTTC+AGG | 0.301892 | 5:-15410669 | MsaT025980.1:CDS |
| GAAATTGGTCTGGGAGCATC+TGG | 0.323125 | 5:-15413443 | MsaT025980.1:CDS |
| GGCTTCGCCGCCACGGCAGC+GGG | 0.336954 | 5:-15416545 | MsaT025980.1:CDS |
| TAGACGGCGGGGTTGTGGTT+GGG | 0.337519 | 5:+15416571 | None:intergenic |
| GAACGAGGGTTGATCACTTC+TGG | 0.343467 | 5:-15410797 | MsaT025980.1:CDS |
| CCAATGACTCATTAGCTTCC+TGG | 0.346299 | 5:+15411032 | None:intergenic |
| ATTAAGTCCTTAAATATTGA+TGG | 0.349118 | 5:-15414636 | MsaT025980.1:CDS |
| TTTGAGAACTTGTTCGGTTA+AGG | 0.350304 | 5:-15415525 | MsaT025980.1:CDS |
| AAATGTTTGCCTGTCAGAAT+TGG | 0.351900 | 5:-15410645 | MsaT025980.1:CDS |
| AAGCAGTCAGTTGAATTGAT+TGG | 0.355108 | 5:+15415383 | None:intergenic |
| TGCAGGTTCCTGCCGTATAC+TGG | 0.362202 | 5:-15411201 | MsaT025980.1:intron |
| AGATGACAGGGAATCTTTAA+TGG | 0.362543 | 5:-15410488 | None:intergenic |
| ATATGTGTGGTCTGGGTATA+GGG | 0.362560 | 5:-15414562 | MsaT025980.1:CDS |
| TAAATACTGAATGCCTATCT+TGG | 0.366844 | 5:-15413859 | MsaT025980.1:CDS |
| CGGAGCTGTGGTCGCTTTGT+GGG | 0.367932 | 5:+15416603 | None:intergenic |
| TGTTGTTGTGGATTGTTGGT+GGG | 0.375591 | 5:-15414613 | MsaT025980.1:CDS |
| CTGCATGGTCTACTAAAGTC+TGG | 0.377028 | 5:+15413045 | None:intergenic |
| TCGGAGCTGTGGTCGCTTTG+TGG | 0.379351 | 5:+15416602 | None:intergenic |
| TTGTAGTGCCCAGCATTATC+AGG | 0.379757 | 5:+15413152 | None:intergenic |
| AGACGGCGGGGTTGTGGTTG+GGG | 0.381261 | 5:+15416572 | None:intergenic |
| TGACTGCTTGGAGGCTGATC+AGG | 0.381765 | 5:-15415369 | MsaT025980.1:intron |
| ATGGTGTTGTTGTGGATTGT+TGG | 0.383484 | 5:-15414617 | MsaT025980.1:CDS |
| AGCTCCTGCCTAATGCCTTC+AGG | 0.384829 | 5:+15414666 | None:intergenic |
| ACCTGCCAACTCAGGCCATC+TGG | 0.386436 | 5:+15411004 | None:intergenic |
| AAAAGAGTGACCGCGTAGTT+TGG | 0.391155 | 5:+15413187 | None:intergenic |
| GCTGCTCTCGCGCGTGAGGC+TGG | 0.391624 | 5:-15416359 | MsaT025980.1:CDS |
| TTGATATGATGAGAAGCTTT+CGG | 0.391930 | 5:-15413511 | MsaT025980.1:CDS |
| TGGATACTCTCCTGTGTTTG+AGG | 0.393796 | 5:-15411113 | MsaT025980.1:CDS |
| TCCCAGAAATATGTGTGGTC+TGG | 0.396705 | 5:-15414570 | MsaT025980.1:CDS |
| ATGATTGATGCTGTAGAAAT+TGG | 0.397538 | 5:-15413458 | MsaT025980.1:CDS |
| AGCAGTCAGTTGAATTGATT+GGG | 0.398837 | 5:+15415384 | None:intergenic |
| TGTTGGTGGGGCATTGTTGA+AGG | 0.399748 | 5:-15414600 | MsaT025980.1:CDS |
| CAGCAACAATCTTTGCTTCA+GGG | 0.401852 | 5:-15410668 | MsaT025980.1:CDS |
| GTGTTGTTGTGGATTGTTGG+TGG | 0.402184 | 5:-15414614 | MsaT025980.1:CDS |
| CGAGTTCTCAAAGGAAGAAC+TGG | 0.402924 | 5:-15413821 | MsaT025980.1:CDS |
| AATGAAAAGTGCCGGTGATC+AGG | 0.403522 | 5:+15410701 | None:intergenic |
| CTCTCGCGCGTGAGGCTGGT+TGG | 0.404707 | 5:-15416355 | MsaT025980.1:CDS |
| CGGTGATCAGGATCATTTCT+GGG | 0.406853 | 5:+15410713 | None:intergenic |
| TGGCTTCGCCGCCACGGCAG+CGG | 0.408569 | 5:-15416546 | MsaT025980.1:CDS |
| TCCTAAGCAGACAAATTTCA+TGG | 0.413620 | 5:+15411069 | None:intergenic |
| CCACGTAGACGGCGGGGTTG+TGG | 0.414296 | 5:+15416566 | None:intergenic |
| ATATCACAATCCCACAAATC+AGG | 0.419172 | 5:-15411137 | MsaT025980.1:CDS |
| AAATACTGAATGCCTATCTT+GGG | 0.427259 | 5:-15413858 | MsaT025980.1:CDS |
| CTTTGTCAATTCCCCAAGAT+AGG | 0.429608 | 5:+15413846 | None:intergenic |
| TGATGGATCCTGAAGGCATT+AGG | 0.431606 | 5:-15414674 | MsaT025980.1:CDS |
| GTTGTTGTGGATTGTTGGTG+GGG | 0.431988 | 5:-15414612 | MsaT025980.1:CDS |
| TTTATGTAAACAGGAACATA+TGG | 0.433574 | 5:+15414907 | None:intergenic |
| CCCAGACCACACATATTTCT+GGG | 0.437815 | 5:+15414569 | None:intergenic |
| GGTGGGGCATTGTTGAAGGC+TGG | 0.439216 | 5:-15414596 | MsaT025980.1:CDS |
| TGCCTTCAGGATCCATCAAC+TGG | 0.446486 | 5:+15414679 | None:intergenic |
| GGGACAAATTCCACCGGAAA+AGG | 0.446606 | 5:-15416524 | MsaT025980.1:CDS |
| GGCGAAGCCACGTAGACGGC+GGG | 0.446831 | 5:+15416559 | None:intergenic |
| CCAGGAAGCTAATGAGTCAT+TGG | 0.447793 | 5:-15411032 | MsaT025980.1:CDS |
| AAAAGAGCGAGAGAAAGAAA+AGG | 0.450160 | 5:-15416498 | MsaT025980.1:CDS |
| TACAGGTATTAAACTCAGCT+TGG | 0.451086 | 5:-15410820 | MsaT025980.1:intron |
| CCCAGAAATATGTGTGGTCT+GGG | 0.451457 | 5:-15414569 | MsaT025980.1:CDS |
| CAATCATACCTTCTGCAAAC+AGG | 0.452909 | 5:+15413474 | None:intergenic |
| AACTCTATGCCACATGAGAC+TGG | 0.453839 | 5:-15413131 | MsaT025980.1:CDS |
| AATCAATTCAACTGACTGCT+TGG | 0.457237 | 5:-15415381 | MsaT025980.1:CDS |
| TTGTGGTTGGGGTAAGTAAT+CGG | 0.458554 | 5:+15416583 | None:intergenic |
| AGTCTTGTACCACCAGTATA+CGG | 0.462042 | 5:+15411189 | None:intergenic |
| AGGATGGGGTGGAGGTATCC+TGG | 0.464484 | 5:-15413392 | MsaT025980.1:CDS |
| ATCCTTGCAGGTGAGATGAC+AGG | 0.465289 | 5:-15410501 | MsaT025980.1:intron |
| GTAGACGGCGGGGTTGTGGT+TGG | 0.466090 | 5:+15416570 | None:intergenic |
| TTGTGTGGAAGTAGCATCTT+CGG | 0.468284 | 5:+15416634 | None:intergenic |
| CCACCCCATCCTTTCTGAAA+AGG | 0.469410 | 5:+15413403 | None:intergenic |
| AGAATTCAAGCTGAATATAC+AGG | 0.471133 | 5:-15414520 | MsaT025980.1:intron |
| TGGTACTTTGAGAACTTGTT+CGG | 0.472279 | 5:-15415531 | MsaT025980.1:CDS |
| AAAAGGAACGAACGAAGCTA+AGG | 0.476064 | 5:-15416481 | MsaT025980.1:CDS |
| GGTTGGATTGTTGATGCTGA+TGG | 0.483062 | 5:-15416338 | MsaT025980.1:CDS |
| ACCATGAAATTTGTCTGCTT+AGG | 0.486759 | 5:-15411070 | MsaT025980.1:CDS |
| TTATGCAAGATATTCATTCT+GGG | 0.487754 | 5:-15414957 | MsaT025980.1:CDS |
| GTATGGTAATTTCCCTCTCC+CGG | 0.489619 | 5:-15416408 | MsaT025980.1:CDS |
| TTAGCTGGACTCCGTCAGTA+TGG | 0.494728 | 5:-15416425 | MsaT025980.1:CDS |
| GCTAGAGGACCTGATAATGC+TGG | 0.501946 | 5:-15413161 | MsaT025980.1:CDS |
| TGATGCTGTAGAAATTGGTC+TGG | 0.501988 | 5:-15413453 | MsaT025980.1:CDS |
| TCATTAGCTTCCTGGTTGGA+AGG | 0.509262 | 5:+15411040 | None:intergenic |
| ACAGGTATTAAACTCAGCTT+GGG | 0.509640 | 5:-15410819 | MsaT025980.1:intron |
| ATATCAGCACGCGCCGGGAG+AGG | 0.510910 | 5:+15416395 | None:intergenic |
| TTTCAGAAAGGATGGGGTGG+AGG | 0.511254 | 5:-15413400 | MsaT025980.1:CDS |
| CAATTCAACTGACTGCTTGG+AGG | 0.518795 | 5:-15415378 | MsaT025980.1:CDS |
| TTCTTCATCAAATGCATGCA+TGG | 0.520174 | 5:-15410620 | MsaT025980.1:intron |
| GGGTGGAGGTATCCTGGTAT+TGG | 0.524209 | 5:-15413386 | MsaT025980.1:CDS |
| TCAGTTGAAAGTCAACCATA+TGG | 0.524592 | 5:-15415554 | MsaT025980.1:CDS |
| GCAGAAAGGGACTCAAAGAA+TGG | 0.530370 | 5:-15415425 | MsaT025980.1:CDS |
| GAGTATCCATCCTGATTTGT+GGG | 0.533867 | 5:+15411127 | None:intergenic |
| GTTCTCAAAGTACCACCATA+TGG | 0.534877 | 5:+15415539 | None:intergenic |
| CAAAGGAAGAACTGGAATTG+AGG | 0.535058 | 5:-15413813 | MsaT025980.1:intron |
| AAAACAGAATCAATAGATGC+AGG | 0.538608 | 5:+15415452 | None:intergenic |
| TCCAGATGGCCTGAGTTGGC+AGG | 0.543608 | 5:-15411005 | MsaT025980.1:intron |
| CATTCATATCAGCACGCGCC+GGG | 0.544842 | 5:+15416390 | None:intergenic |
| AAATATTGATGGTGTTGTTG+TGG | 0.545768 | 5:-15414625 | MsaT025980.1:CDS |
| GTGTCTCCCTCCTTCCAACA+TGG | 0.546110 | 5:-15416300 | MsaT025980.1:intron |
| ATTTGTCCCCGCTGCCGTGG+CGG | 0.547154 | 5:+15416538 | None:intergenic |
| CTAAAATTACCTGCCAACTC+AGG | 0.548595 | 5:+15410996 | None:intergenic |
| TGTTGGAAGGAGGGAGACAC+TGG | 0.550508 | 5:+15416303 | None:intergenic |
| ATCACGAGTAGAATGTTAGC+TGG | 0.553331 | 5:-15416440 | MsaT025980.1:CDS |
| GGATCCTGAAGGCATTAGGC+AGG | 0.553951 | 5:-15414670 | MsaT025980.1:CDS |
| TGGCGGCGAAGCCACGTAGA+CGG | 0.555201 | 5:+15416555 | None:intergenic |
| CCCATCCTTTCTGAAAAGGA+AGG | 0.556761 | 5:+15413407 | None:intergenic |
| TATCAGCACGCGCCGGGAGA+GGG | 0.558304 | 5:+15416396 | None:intergenic |
| AAACAAAGAATGAAAAGTGC+CGG | 0.559419 | 5:+15410693 | None:intergenic |
| GTCAATTCTGCTGCATGACT+AGG | 0.563214 | 5:+15411166 | None:intergenic |
| AGAGTATCCATCCTGATTTG+TGG | 0.565198 | 5:+15411126 | None:intergenic |
| TCCTTGCAGGTGAGATGACA+GGG | 0.565996 | 5:-15410500 | MsaT025980.1:intron |
| TGCATGGTCTACTAAAGTCT+GGG | 0.566186 | 5:+15413046 | None:intergenic |
| CATGCAGCAGAATTGACTGC+AGG | 0.566474 | 5:-15411160 | MsaT025980.1:CDS |
| TCCAGGGATCATTTGCCGCA+AGG | 0.566747 | 5:-15415577 | MsaT025980.1:intron |
| TGAAGAAATCCAATTCTGAC+AGG | 0.567129 | 5:+15410636 | None:intergenic |
| TCTACGTGGCTTCGCCGCCA+CGG | 0.569361 | 5:-15416552 | MsaT025980.1:CDS |
| AACACTAGAGAATCAGTCAC+CGG | 0.572564 | 5:-15415501 | MsaT025980.1:CDS |
| ATGGACGCTTCTTCTTACAT+TGG | 0.572612 | 5:-15413073 | MsaT025980.1:CDS |
| TTGATCCAGATGGCCTGAGT+TGG | 0.574969 | 5:-15411009 | MsaT025980.1:CDS |
| CTAGAGGACCTGATAATGCT+GGG | 0.581369 | 5:-15413160 | MsaT025980.1:CDS |
| AGGAATGCAACCAACCATGT+TGG | 0.584157 | 5:+15416286 | None:intergenic |
| ACCTGAAACTCACCAATACC+AGG | 0.584300 | 5:+15413374 | None:intergenic |
| CACAATCCCACAAATCAGGA+TGG | 0.585925 | 5:-15411133 | MsaT025980.1:CDS |
| TTAAACTCAGCTTGGGAACG+AGG | 0.585944 | 5:-15410812 | MsaT025980.1:CDS |
| GACAAAGAGCGAGTTCTCAA+AGG | 0.589070 | 5:-15413830 | MsaT025980.1:CDS |
| CAACCAACCATGTTGGAAGG+AGG | 0.589912 | 5:+15416293 | None:intergenic |
| TTGACTTTCAACTGACCTTG+CGG | 0.590564 | 5:+15415562 | None:intergenic |
| AAAGGAACGAACGAAGCTAA+GGG | 0.591350 | 5:-15416480 | MsaT025980.1:CDS |
| GGAATTTGTCCCCGCTGCCG+TGG | 0.591731 | 5:+15416535 | None:intergenic |
| GAGACAAAACATTATCTGCA+TGG | 0.594938 | 5:+15413030 | None:intergenic |
| AGGATTTAATCCTTCCAACC+AGG | 0.595036 | 5:-15411050 | MsaT025980.1:CDS |
| CCACAACCCCGCCGTCTACG+TGG | 0.596897 | 5:-15416566 | MsaT025980.1:CDS |
| AACCAACCATGTTGGAAGGA+GGG | 0.597351 | 5:+15416294 | None:intergenic |
| AATTGGTCTGGGAGCATCTG+GGG | 0.601511 | 5:-15413441 | MsaT025980.1:CDS |
| TTGTACCACCAGTATACGGC+AGG | 0.604078 | 5:+15411193 | None:intergenic |
| CGGCGAAGCCACGTAGACGG+CGG | 0.605052 | 5:+15416558 | None:intergenic |
| TGACTCATTAGCTTCCTGGT+TGG | 0.607296 | 5:+15411036 | None:intergenic |
| CCAGAAATGATCCTGATCAC+CGG | 0.607555 | 5:-15410712 | MsaT025980.1:CDS |
| AGGAGGGAGACACTGGCGAT+AGG | 0.608162 | 5:+15416310 | None:intergenic |
| ATGCAACCAACCATGTTGGA+AGG | 0.612973 | 5:+15416290 | None:intergenic |
| GTACGAGAGATTGATTGAGA+TGG | 0.613489 | 5:-15410741 | MsaT025980.1:CDS |
| ACTTGCTGCTCTCGCGCGTG+AGG | 0.614837 | 5:-15416363 | MsaT025980.1:CDS |
| TAAACTCAGCTTGGGAACGA+GGG | 0.616065 | 5:-15410811 | MsaT025980.1:CDS |
| CATTCATCAACTCTAAGTCC+CGG | 0.620550 | 5:+15415482 | None:intergenic |
| AATACTGAATGCCTATCTTG+GGG | 0.620680 | 5:-15413857 | MsaT025980.1:CDS |
| TTTGATGACCTGTTTGCAGA+AGG | 0.622630 | 5:-15413482 | MsaT025980.1:CDS |
| TATGCAAGATATTCATTCTG+GGG | 0.623010 | 5:-15414956 | MsaT025980.1:CDS |
| CCATCCTTTCTGAAAAGGAA+GGG | 0.623214 | 5:+15413408 | None:intergenic |
| AAATTGGTCTGGGAGCATCT+GGG | 0.623821 | 5:-15413442 | MsaT025980.1:CDS |
| GGGGTAAGTAATCGGAGCTG+TGG | 0.625072 | 5:+15416591 | None:intergenic |
| TGCCAGTTGATGGATCCTGA+AGG | 0.625854 | 5:-15414681 | MsaT025980.1:CDS |
| GATGCTGTAGAAATTGGTCT+GGG | 0.630924 | 5:-15413452 | MsaT025980.1:CDS |
| TTGTGGGTCGAGATCTTGTG+TGG | 0.631123 | 5:+15416619 | None:intergenic |
| GAGTCATTGGTTGATCCAGA+TGG | 0.635799 | 5:-15411019 | MsaT025980.1:CDS |
| CGCAGAGCTGCCAAACTACG+CGG | 0.638467 | 5:-15413197 | MsaT025980.1:CDS |
| TCATTCATATCAGCACGCGC+CGG | 0.643548 | 5:+15416389 | None:intergenic |
| GCAGCGGGGACAAATTCCAC+CGG | 0.648489 | 5:-15416530 | MsaT025980.1:CDS |
| GGATATTGGAAAAGACAACC+AGG | 0.649948 | 5:-15413910 | MsaT025980.1:intron |
| CAAAAGAATCCAGTCTCATG+TGG | 0.650881 | 5:+15413122 | None:intergenic |
| GAGGGAAATTACCATACTGA+CGG | 0.656418 | 5:+15416414 | None:intergenic |
| GCTTCGCCGCCACGGCAGCG+GGG | 0.660164 | 5:-15416544 | MsaT025980.1:CDS |
| ACACTAGAGAATCAGTCACC+GGG | 0.668842 | 5:-15415500 | MsaT025980.1:CDS |
| TTCTACTCGTGATAGCTCGA+CGG | 0.680739 | 5:+15416450 | None:intergenic |
| AGGTTCCTGCCGTATACTGG+TGG | 0.683068 | 5:-15411198 | MsaT025980.1:CDS |
| GTTGAAAGTCAACCATATGG+TGG | 0.690555 | 5:-15415551 | MsaT025980.1:CDS |
| GCGAAGCCACGTAGACGGCG+GGG | 0.698164 | 5:+15416560 | None:intergenic |
| GGAACTCCCAGAAATATGTG+TGG | 0.702347 | 5:-15414575 | MsaT025980.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 15410491 | 15416669 | 15410491 | ID=MsaG025980 |
| Chr5 | mRNA | 15410491 | 15416669 | 15410491 | ID=MsaT025980.1;Parent=MsaG025980 |
| Chr5 | exon | 15410491 | 15410513 | 15410491 | ID=MsaT025980.1.exon10;Parent=MsaT025980.1 |
| Chr5 | CDS | 15410491 | 15410513 | 15410491 | ID=cds.MsaT025980.1;Parent=MsaT025980.1 |
| Chr5 | exon | 15410621 | 15410837 | 15410621 | ID=MsaT025980.1.exon9;Parent=MsaT025980.1 |
| Chr5 | CDS | 15410621 | 15410837 | 15410621 | ID=cds.MsaT025980.1;Parent=MsaT025980.1 |
| Chr5 | exon | 15411006 | 15411218 | 15411006 | ID=MsaT025980.1.exon8;Parent=MsaT025980.1 |
| Chr5 | CDS | 15411006 | 15411218 | 15411006 | ID=cds.MsaT025980.1;Parent=MsaT025980.1 |
| Chr5 | exon | 15412989 | 15413249 | 15412989 | ID=MsaT025980.1.exon7;Parent=MsaT025980.1 |
| Chr5 | CDS | 15412989 | 15413249 | 15412989 | ID=cds.MsaT025980.1;Parent=MsaT025980.1 |
| Chr5 | exon | 15413376 | 15413540 | 15413376 | ID=MsaT025980.1.exon6;Parent=MsaT025980.1 |
| Chr5 | CDS | 15413376 | 15413540 | 15413376 | ID=cds.MsaT025980.1;Parent=MsaT025980.1 |
| Chr5 | exon | 15413814 | 15413918 | 15413814 | ID=MsaT025980.1.exon5;Parent=MsaT025980.1 |
| Chr5 | CDS | 15413814 | 15413918 | 15413814 | ID=cds.MsaT025980.1;Parent=MsaT025980.1 |
| Chr5 | exon | 15414521 | 15414724 | 15414521 | ID=MsaT025980.1.exon4;Parent=MsaT025980.1 |
| Chr5 | CDS | 15414521 | 15414724 | 15414521 | ID=cds.MsaT025980.1;Parent=MsaT025980.1 |
| Chr5 | exon | 15414900 | 15414980 | 15414900 | ID=MsaT025980.1.exon3;Parent=MsaT025980.1 |
| Chr5 | CDS | 15414900 | 15414980 | 15414900 | ID=cds.MsaT025980.1;Parent=MsaT025980.1 |
| Chr5 | exon | 15415370 | 15415594 | 15415370 | ID=MsaT025980.1.exon2;Parent=MsaT025980.1 |
| Chr5 | CDS | 15415370 | 15415594 | 15415370 | ID=cds.MsaT025980.1;Parent=MsaT025980.1 |
| Chr5 | exon | 15416301 | 15416669 | 15416301 | ID=MsaT025980.1.exon1;Parent=MsaT025980.1 |
| Chr5 | CDS | 15416301 | 15416669 | 15416301 | ID=cds.MsaT025980.1;Parent=MsaT025980.1 |
| Gene Sequence |
| Protein sequence |