AlfalfaGEDB | MsaG026011

M. sativa ssp. caerulea / MsaG026011

KEGG: -
GO: GO:0000981 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13837.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026011	XP_003612572.1	97.682	302	4	1	1	299	1	302	0.0	596

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026011	sp\|O80450\|TGT3B_ARATH	42.960	277	141	5	26	299	26	288	3.17e-48	165

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026011	tr\|G7K6R0\|G7K6R0_MEDTR	97.682	302	4	1	1	299	1	302	0.0	596

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TFs/TRs:

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Gene ID	Type	Classification
MsaG026011	TF	Trihelix

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026011	MtrunA17_Chr5g0409071	97.682	302	4	1	1	299	1	302	0.0	596
MsaG026011	MtrunA17_Chr4g0006261	50.000	252	110	5	44	294	40	276	1.42e-56	184
MsaG026011	MtrunA17_Chr7g0242591	49.412	255	114	5	44	297	51	291	4.79e-51	170
MsaG026011	MtrunA17_Chr3g0123021	50.820	61	30	0	46	106	77	137	5.27e-14	71.6
MsaG026011	MtrunA17_Chr2g0290511	30.508	118	71	3	30	138	241	356	7.69e-13	68.2
MsaG026011	MtrunA17_Chr1g0201911	29.752	121	75	2	22	132	342	462	1.52e-12	67.8
MsaG026011	MtrunA17_Chr1g0201941	33.696	92	56	3	46	133	455	545	3.77e-11	63.5
MsaG026011	MtrunA17_Chr6g0463941	34.066	91	55	3	46	132	465	554	7.31e-11	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026011	AT2G38250.1	42.960	277	141	5	26	299	26	288	3.22e-49	165
MsaG026011	AT5G01380.1	39.590	293	148	6	26	299	33	315	1.23e-40	144
MsaG026011	AT1G13450.4	40.449	89	52	1	46	133	87	175	2.61e-15	73.9
MsaG026011	AT1G13450.3	40.449	89	52	1	46	133	87	175	4.16e-15	74.3
MsaG026011	AT1G13450.2	40.449	89	52	1	46	133	87	175	4.16e-15	74.3
MsaG026011	AT1G13450.1	40.449	89	52	1	46	133	87	175	1.19e-14	74.3
MsaG026011	AT3G25990.1	39.785	93	48	2	46	132	55	145	1.84e-14	73.6
MsaG026011	AT1G76890.2	34.711	121	74	3	19	135	371	490	9.20e-14	72.0
MsaG026011	AT1G76880.1	34.579	107	60	4	30	132	398	498	2.52e-11	64.7

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Find 82 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTACGGCGGCGGTGG+AGG	0.483528	5:-15760740	MsaT026011.1:CDS
AAACCGAAAATGTACGGCGG+CGG	0.675954	5:-15760746	None:intergenic
AACAGTTGTTTGAACAGGAA+TGG	0.513571	5:-15758730	MsaT026011.1:CDS
AACATCGTCGTTGATGTCTC+CGG	0.509011	5:-15760663	MsaT026011.1:CDS
AAGAGAGTTCATAGCGATAA+GGG	0.460403	5:-15760585	MsaT026011.1:CDS
AAGTGGTGAGTTCGAAGATG+AGG	0.496550	5:-15760511	MsaT026011.1:CDS
AATACACGTAAAAGGAAAGC+TGG	0.551659	5:-15758890	MsaT026011.1:CDS
AATGATTGAACAGGAATGGA+GGG	0.570661	5:-15758672	MsaT026011.1:CDS
AATGGAGATGCAGTGGAGGG+AGG	0.556920	5:-15758777	MsaT026011.1:CDS
ACAGGAATGGCGGCAGTCAA+TGG	0.476521	5:-15758717	MsaT026011.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	15758571	15760759	15758571	ID=MsaG026011
Chr5	mRNA	15758571	15760759	15758571	ID=MsaT026011.1;Parent=MsaG026011
Chr5	exon	15758571	15759152	15758571	ID=MsaT026011.1.exon2;Parent=MsaT026011.1
Chr5	CDS	15758571	15759152	15758571	ID=cds.MsaT026011.1;Parent=MsaT026011.1
Chr5	exon	15760442	15760759	15760442	ID=MsaT026011.1.exon1;Parent=MsaT026011.1
Chr5	CDS	15760442	15760759	15760442	ID=cds.MsaT026011.1;Parent=MsaT026011.1

Gene Sequence

>MsaT026011.1

ATGTACGGCGGCGGTGGAGGAGACGATGCTCTGGCAGCTCGCCTGGGGATAGTACCACCGTCACTTCTGATTCCAACATCGTCGTTGATGTCTCCGGCGGCGATGAGAGAGGAGAGGGTACCAGCTCAGCCGCAGTGGAGTCAACAGGAGACAAGAGAGTTCATAGCGATAAGGGCGGAGCTGGAGAGGGATTTCACTGCTTCCAAGAGGAACAAGACGCTTTGGGAAGTGGTGAGTTCGAAGATGAGGGAGAGAGGGTATAGGAGGAGCCCTGAACAGTGTAAATGCAAGTGGAAGAATCTTGTTAATCGCTATAAGGGAAAAGAGACATCTGATCCAGAACATGGAAAGCAATGCCCATTTTTTGAAGAATTGCATGCAGTTTTTACCGAAAGAGCACATAGCATGCAACGCTTACTTCTTGAATCTGAAACTCGTTCAGCTCAAACAAAAAAAGGAGTGAAGAAAATAAGAAGTGGAGACCGATCCTCTGACGAATTCTCAGAAGATGATGAGGAAGTTGAAGATGACAGTGAAGAGGAGAGACCTGCGAGAAGCAATACACGTAAAAGGAAAGCTGGCAAAATTGCAACAGAGAAGTCTTCAAGGGCAAACAATAGTACTAGTAATATTCAAGAAATGCTCAAGGAATTTTTCCAACACCAATTAAAAATGGAGATGCAGTGGAGGGAGGTGATGGAAAGGCGGGCACATGAAAAACAGTTGTTTGAACAGGAATGGCGGCAGTCAATGGAAAAGCTTGAGAGGGAGAGATTAATGATTGAACAGGAATGGAGGGAAAGAGAAGAGCATAGGAGACTGAGGGAGGAGAATAGGGCAGAGAGAAGGGACGCTTTGTTGACGACCCTTTTAAACAAACTCATTCATGAATCTAACTAA

Protein sequence

>MsaT026011.1

MYGGGGGDDALAARLGIVPPSLLIPTSSLMSPAAMREERVPAQPQWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGYRRSPEQCKCKWKNLVNRYKGKETSDPEHGKQCPFFEELHAVFTERAHSMQRLLLESETRSAQTKKGVKKIRSGDRSSDEFSEDDEEVEDDSEEERPARSNTRKRKAGKIATEKSSRANNSTSNIQEMLKEFFQHQLKMEMQWREVMERRAHEKQLFEQEWRQSMEKLERERLMIEQEWREREEHRRLREENRAERRDALLTTLLNKLIHESN*