Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG026066 | XP_024641248.2 | 61.751 | 217 | 71 | 3 | 1 | 213 | 1 | 209 | 6.12e-71 | 253 |
| MsaG026066 | XP_024641248.2 | 72.067 | 358 | 82 | 3 | 211 | 553 | 405 | 759 | 8.14e-176 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG026066 | sp|Q9SY66|FRS11_ARATH | 43.985 | 266 | 134 | 1 | 210 | 460 | 400 | 665 | 5.58e-69 | 238 |
| MsaG026066 | sp|Q9SY66|FRS11_ARATH | 43.781 | 201 | 103 | 3 | 13 | 209 | 7 | 201 | 2.63e-39 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG026066 | tr|A0A396JX52|A0A396JX52_MEDTR | 61.751 | 217 | 71 | 3 | 1 | 213 | 1 | 209 | 2.92e-71 | 253 |
| MsaG026066 | tr|A0A396JX52|A0A396JX52_MEDTR | 72.067 | 358 | 82 | 3 | 211 | 553 | 405 | 759 | 3.89e-176 | 525 |
| Gene ID | Type | Classification |
|---|---|---|
| MsaG026066 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsaG006263 | MsaG026066 | 0.803397 | 5.984505e-49 | 8.741997e-47 |
| MsaG012237 | MsaG026066 | 0.800874 | 1.965885e-48 | 2.710944e-46 |
| MsaG045413 | MsaG026066 | 0.808833 | 4.347771e-50 | 7.218801e-48 |
| MsaG047181 | MsaG026066 | 0.813919 | 3.460393e-51 | 6.510062e-49 |
| MsaG003294 | MsaG026066 | 0.801133 | 1.740979e-48 | 2.414882e-46 |
| MsaG017204 | MsaG026066 | 0.811475 | 1.179074e-50 | 2.087410e-48 |
| MsaG019176 | MsaG026066 | 0.802013 | 1.151774e-48 | 1.629796e-46 |
| MsaG019405 | MsaG026066 | 0.806206 | 1.559668e-49 | 2.432369e-47 |
| MsaG036061 | MsaG026066 | 0.803378 | 6.039247e-49 | 8.818113e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG026066 | MtrunA17_Chr1g0198761 | 72.067 | 358 | 82 | 3 | 211 | 553 | 405 | 759 | 7.48e-180 | 525 |
| MsaG026066 | MtrunA17_Chr1g0198761 | 61.751 | 217 | 71 | 3 | 1 | 213 | 1 | 209 | 5.63e-75 | 253 |
| MsaG026066 | MtrunA17_Chr5g0431001 | 64.545 | 220 | 68 | 2 | 1 | 210 | 1 | 220 | 4.21e-85 | 273 |
| MsaG026066 | MtrunA17_Chr5g0431001 | 76.923 | 65 | 15 | 0 | 210 | 274 | 418 | 482 | 4.45e-27 | 114 |
| MsaG026066 | MtrunA17_Chr2g0276841 | 44.565 | 276 | 135 | 2 | 200 | 460 | 415 | 687 | 4.33e-70 | 238 |
| MsaG026066 | MtrunA17_Chr2g0276841 | 42.564 | 195 | 95 | 4 | 19 | 209 | 42 | 223 | 2.35e-39 | 152 |
| MsaG026066 | MtrunA17_Chr2g0294841 | 35.897 | 351 | 187 | 5 | 210 | 527 | 400 | 745 | 1.16e-66 | 230 |
| MsaG026066 | MtrunA17_Chr2g0294841 | 39.560 | 182 | 97 | 4 | 34 | 208 | 25 | 200 | 2.50e-29 | 123 |
| MsaG026066 | MtrunA17_Chr2g0290391 | 44.275 | 262 | 123 | 5 | 210 | 454 | 411 | 666 | 5.87e-58 | 205 |
| MsaG026066 | MtrunA17_Chr2g0290391 | 48.125 | 160 | 71 | 3 | 53 | 208 | 50 | 201 | 6.42e-37 | 145 |
| MsaG026066 | MtrunA17_Chr5g0430921 | 79.545 | 88 | 15 | 1 | 457 | 544 | 1 | 85 | 1.18e-41 | 144 |
| MsaG026066 | MtrunA17_Chr1g0202341 | 33.486 | 218 | 140 | 1 | 204 | 416 | 391 | 608 | 6.24e-31 | 127 |
| MsaG026066 | MtrunA17_Chr3g0080351 | 32.589 | 224 | 133 | 5 | 206 | 418 | 408 | 624 | 3.76e-29 | 122 |
| MsaG026066 | MtrunA17_Chr1g0207551 | 31.193 | 218 | 144 | 3 | 206 | 418 | 374 | 590 | 1.23e-23 | 105 |
| MsaG026066 | MtrunA17_Chr5g0448761 | 30.516 | 213 | 139 | 4 | 211 | 416 | 414 | 624 | 2.62e-23 | 104 |
| MsaG026066 | MtrunA17_Chr5g0448761 | 30.921 | 152 | 96 | 3 | 54 | 202 | 60 | 205 | 6.00e-11 | 65.5 |
| MsaG026066 | MtrunA17_Chr2g0296781 | 26.866 | 335 | 196 | 9 | 207 | 504 | 335 | 657 | 1.39e-22 | 102 |
| MsaG026066 | MtrunA17_Chr2g0329031 | 25.000 | 348 | 221 | 9 | 206 | 521 | 347 | 686 | 1.78e-22 | 102 |
| MsaG026066 | MtrunA17_Chr6g0477261 | 26.300 | 327 | 196 | 9 | 207 | 498 | 224 | 540 | 5.75e-22 | 100 |
| MsaG026066 | MtrunA17_Chr5g0448511 | 28.505 | 214 | 148 | 1 | 204 | 412 | 179 | 392 | 1.18e-21 | 98.6 |
| MsaG026066 | MtrunA17_Chr5g0440451 | 30.131 | 229 | 148 | 5 | 202 | 422 | 388 | 612 | 1.54e-20 | 95.9 |
| MsaG026066 | MtrunA17_Chr5g0441581 | 30.769 | 221 | 131 | 6 | 210 | 414 | 366 | 580 | 1.74e-19 | 92.4 |
| MsaG026066 | MtrunA17_Chr1g0196541 | 26.536 | 358 | 230 | 10 | 207 | 538 | 335 | 685 | 6.56e-19 | 90.5 |
| MsaG026066 | MtrunA17_Chr2g0291581 | 25.862 | 232 | 157 | 4 | 196 | 415 | 391 | 619 | 9.94e-19 | 90.1 |
| MsaG026066 | MtrunA17_Chr3g0118611 | 29.469 | 207 | 139 | 3 | 211 | 412 | 292 | 496 | 1.03e-18 | 90.1 |
| MsaG026066 | MtrunA17_Chr2g0287061 | 23.922 | 255 | 167 | 4 | 206 | 444 | 487 | 730 | 1.18e-18 | 90.1 |
| MsaG026066 | MtrunA17_Chr1g0203051 | 27.885 | 208 | 144 | 3 | 204 | 405 | 415 | 622 | 3.82e-18 | 88.2 |
| MsaG026066 | MtrunA17_Chr1g0203051 | 29.630 | 135 | 86 | 3 | 66 | 198 | 91 | 218 | 1.74e-13 | 73.2 |
| MsaG026066 | MtrunA17_Chr3g0082121 | 28.512 | 242 | 161 | 7 | 203 | 437 | 371 | 607 | 8.11e-18 | 87.0 |
| MsaG026066 | MtrunA17_Chr6g0458391 | 27.230 | 213 | 149 | 2 | 211 | 418 | 555 | 766 | 3.25e-17 | 85.5 |
| MsaG026066 | MtrunA17_Chr6g0458391 | 34.307 | 137 | 82 | 3 | 41 | 177 | 213 | 341 | 2.54e-15 | 79.3 |
| MsaG026066 | MtrunA17_Chr2g0308841 | 25.000 | 224 | 158 | 3 | 208 | 425 | 12 | 231 | 9.85e-17 | 80.5 |
| MsaG026066 | MtrunA17_Chr2g0324011 | 28.509 | 228 | 155 | 5 | 196 | 416 | 341 | 567 | 1.56e-16 | 82.8 |
| MsaG026066 | MtrunA17_Chr1g0203721 | 22.430 | 214 | 162 | 2 | 209 | 418 | 411 | 624 | 3.84e-14 | 75.9 |
| MsaG026066 | MtrunA17_Chr1g0203721 | 35.238 | 105 | 61 | 2 | 57 | 161 | 66 | 163 | 5.82e-12 | 68.6 |
| MsaG026066 | MtrunA17_Chr8g0363841 | 26.168 | 214 | 149 | 4 | 211 | 416 | 364 | 576 | 9.24e-14 | 74.3 |
| MsaG026066 | MtrunA17_Chr1g0171741 | 32.203 | 118 | 68 | 3 | 60 | 174 | 139 | 247 | 1.74e-13 | 70.9 |
| MsaG026066 | MtrunA17_Chr2g0287651 | 33.333 | 162 | 90 | 6 | 50 | 206 | 74 | 222 | 7.66e-13 | 71.6 |
| MsaG026066 | MtrunA17_Chr2g0287651 | 25.000 | 212 | 153 | 2 | 211 | 416 | 420 | 631 | 1.92e-12 | 70.1 |
| MsaG026066 | MtrunA17_Chr2g0329421 | 32.174 | 115 | 68 | 3 | 48 | 162 | 23 | 127 | 4.28e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsaG026066 | AT1G10240.2 | 43.985 | 266 | 134 | 1 | 210 | 460 | 400 | 665 | 5.68e-70 | 238 |
| MsaG026066 | AT1G10240.2 | 43.781 | 201 | 103 | 3 | 13 | 209 | 7 | 201 | 2.68e-40 | 155 |
| MsaG026066 | AT1G10240.1 | 43.985 | 266 | 134 | 1 | 210 | 460 | 400 | 665 | 5.68e-70 | 238 |
| MsaG026066 | AT1G10240.1 | 43.781 | 201 | 103 | 3 | 13 | 209 | 7 | 201 | 2.68e-40 | 155 |
| MsaG026066 | AT5G28530.5 | 41.121 | 214 | 119 | 2 | 204 | 416 | 346 | 553 | 2.96e-48 | 177 |
| MsaG026066 | AT5G28530.5 | 47.059 | 187 | 87 | 3 | 25 | 208 | 28 | 205 | 4.60e-42 | 160 |
| MsaG026066 | AT5G28530.4 | 41.121 | 214 | 123 | 2 | 204 | 416 | 346 | 557 | 8.50e-48 | 176 |
| MsaG026066 | AT5G28530.4 | 47.059 | 187 | 87 | 3 | 25 | 208 | 28 | 205 | 5.03e-42 | 160 |
| MsaG026066 | AT5G28530.3 | 41.121 | 214 | 119 | 2 | 204 | 416 | 409 | 616 | 9.38e-48 | 177 |
| MsaG026066 | AT5G28530.3 | 47.059 | 187 | 87 | 3 | 25 | 208 | 28 | 205 | 1.07e-41 | 160 |
| MsaG026066 | AT5G28530.2 | 41.121 | 214 | 119 | 2 | 204 | 416 | 409 | 616 | 9.38e-48 | 177 |
| MsaG026066 | AT5G28530.2 | 47.059 | 187 | 87 | 3 | 25 | 208 | 28 | 205 | 1.07e-41 | 160 |
| MsaG026066 | AT5G28530.1 | 41.121 | 214 | 123 | 2 | 204 | 416 | 409 | 620 | 2.74e-47 | 176 |
| MsaG026066 | AT5G28530.1 | 47.059 | 187 | 87 | 3 | 25 | 208 | 28 | 205 | 1.21e-41 | 159 |
| MsaG026066 | AT4G15090.1 | 26.364 | 330 | 211 | 8 | 206 | 509 | 394 | 717 | 1.19e-26 | 115 |
| MsaG026066 | AT4G15090.5 | 26.364 | 330 | 211 | 8 | 206 | 509 | 394 | 717 | 1.19e-26 | 115 |
| MsaG026066 | AT4G15090.3 | 26.364 | 330 | 211 | 8 | 206 | 509 | 394 | 717 | 1.19e-26 | 115 |
| MsaG026066 | AT4G15090.2 | 26.364 | 330 | 211 | 8 | 206 | 509 | 394 | 717 | 1.19e-26 | 115 |
| MsaG026066 | AT4G15090.4 | 26.364 | 330 | 211 | 8 | 206 | 509 | 394 | 717 | 1.19e-26 | 115 |
| MsaG026066 | AT4G38170.1 | 26.606 | 327 | 214 | 8 | 212 | 514 | 189 | 513 | 4.45e-25 | 109 |
| MsaG026066 | AT4G38180.1 | 30.415 | 217 | 144 | 2 | 210 | 419 | 422 | 638 | 7.32e-24 | 106 |
| MsaG026066 | AT4G38180.1 | 30.286 | 175 | 108 | 4 | 30 | 202 | 55 | 217 | 1.73e-12 | 70.9 |
| MsaG026066 | AT3G22170.2 | 26.282 | 312 | 198 | 8 | 206 | 493 | 403 | 706 | 3.09e-23 | 104 |
| MsaG026066 | AT3G22170.1 | 26.282 | 312 | 198 | 8 | 206 | 493 | 403 | 706 | 3.09e-23 | 104 |
| MsaG026066 | AT1G76320.2 | 27.962 | 211 | 146 | 3 | 206 | 412 | 331 | 539 | 4.08e-21 | 98.2 |
| MsaG026066 | AT1G76320.3 | 27.962 | 211 | 146 | 3 | 206 | 412 | 331 | 539 | 4.16e-21 | 97.8 |
| MsaG026066 | AT1G76320.1 | 27.962 | 211 | 146 | 3 | 206 | 412 | 331 | 539 | 4.43e-21 | 97.8 |
| MsaG026066 | AT1G76320.4 | 27.962 | 211 | 146 | 3 | 206 | 412 | 331 | 539 | 4.43e-21 | 97.8 |
| MsaG026066 | AT4G19990.1 | 27.778 | 216 | 150 | 2 | 207 | 416 | 286 | 501 | 1.06e-20 | 96.7 |
| MsaG026066 | AT4G19990.3 | 27.778 | 216 | 150 | 2 | 207 | 416 | 343 | 558 | 1.10e-20 | 96.7 |
| MsaG026066 | AT4G19990.4 | 27.778 | 216 | 150 | 2 | 207 | 416 | 343 | 558 | 1.10e-20 | 96.7 |
| MsaG026066 | AT4G19990.5 | 27.778 | 216 | 150 | 2 | 207 | 416 | 343 | 558 | 1.12e-20 | 96.7 |
| MsaG026066 | AT4G19990.6 | 27.778 | 216 | 150 | 2 | 207 | 416 | 343 | 558 | 1.12e-20 | 96.7 |
| MsaG026066 | AT4G19990.2 | 27.778 | 216 | 150 | 2 | 207 | 416 | 343 | 558 | 1.12e-20 | 96.7 |
| MsaG026066 | AT4G19990.7 | 27.778 | 216 | 150 | 2 | 207 | 416 | 357 | 572 | 1.31e-20 | 96.7 |
| MsaG026066 | AT5G18960.2 | 24.590 | 244 | 174 | 3 | 212 | 448 | 521 | 761 | 7.28e-19 | 90.9 |
| MsaG026066 | AT5G18960.1 | 24.590 | 244 | 174 | 3 | 212 | 448 | 521 | 761 | 7.28e-19 | 90.9 |
| MsaG026066 | AT1G52520.1 | 24.215 | 223 | 156 | 4 | 206 | 415 | 414 | 636 | 1.10e-17 | 87.0 |
| MsaG026066 | AT3G06250.2 | 23.413 | 252 | 183 | 3 | 204 | 448 | 489 | 737 | 1.33e-17 | 87.0 |
| MsaG026066 | AT3G06250.1 | 23.413 | 252 | 183 | 3 | 204 | 448 | 489 | 737 | 1.33e-17 | 87.0 |
| MsaG026066 | AT3G06250.3 | 23.413 | 252 | 183 | 3 | 204 | 448 | 489 | 737 | 1.33e-17 | 87.0 |
| MsaG026066 | AT2G27110.2 | 25.676 | 222 | 155 | 4 | 211 | 425 | 370 | 588 | 9.54e-17 | 84.3 |
| MsaG026066 | AT2G27110.1 | 25.676 | 222 | 155 | 4 | 211 | 425 | 370 | 588 | 9.54e-17 | 84.3 |
| MsaG026066 | AT2G27110.3 | 25.676 | 222 | 155 | 4 | 211 | 425 | 225 | 443 | 1.16e-16 | 84.0 |
| MsaG026066 | AT3G59470.3 | 37.273 | 110 | 61 | 3 | 54 | 163 | 70 | 171 | 7.21e-14 | 72.0 |
| MsaG026066 | AT3G59470.1 | 37.273 | 110 | 61 | 3 | 54 | 163 | 70 | 171 | 7.21e-14 | 72.0 |
| MsaG026066 | AT3G59470.2 | 37.273 | 110 | 61 | 3 | 54 | 163 | 82 | 183 | 9.60e-14 | 72.0 |
| MsaG026066 | AT2G32250.6 | 24.638 | 207 | 152 | 3 | 213 | 415 | 345 | 551 | 1.25e-13 | 74.3 |
| MsaG026066 | AT2G32250.1 | 24.638 | 207 | 152 | 3 | 213 | 415 | 345 | 551 | 1.25e-13 | 74.3 |
| MsaG026066 | AT2G32250.3 | 24.638 | 207 | 152 | 3 | 213 | 415 | 345 | 551 | 1.25e-13 | 74.3 |
| MsaG026066 | AT2G32250.5 | 24.638 | 207 | 152 | 3 | 213 | 415 | 345 | 551 | 1.29e-13 | 74.3 |
| MsaG026066 | AT2G32250.2 | 24.638 | 207 | 152 | 3 | 213 | 415 | 345 | 551 | 1.32e-13 | 74.3 |
| MsaG026066 | AT2G32250.4 | 24.638 | 207 | 152 | 3 | 213 | 415 | 345 | 551 | 1.32e-13 | 74.3 |
| MsaG026066 | AT2G32250.8 | 24.638 | 207 | 152 | 3 | 213 | 415 | 304 | 510 | 1.51e-13 | 74.3 |
| MsaG026066 | AT2G32250.7 | 24.638 | 207 | 152 | 3 | 213 | 415 | 304 | 510 | 1.55e-13 | 73.9 |
| MsaG026066 | AT1G80010.1 | 24.569 | 232 | 138 | 7 | 208 | 415 | 441 | 659 | 2.28e-13 | 73.6 |
Find 78 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGATAATTTGATTTATT+TGG | 0.093166 | 5:-16323072 | MsaT026066.1:CDS |
| TCTACTCTCATCATCAATTT+TGG | 0.127832 | 5:-16323875 | MsaT026066.1:CDS |
| TTGACTATATGACTGCATTT+TGG | 0.141368 | 5:+16323236 | None:intergenic |
| ACATCATAACCATCATTATT+TGG | 0.153794 | 5:+16323029 | None:intergenic |
| CTAAAGGCTTTGAAGGAAAA+TGG | 0.187093 | 5:-16324849 | MsaT026066.1:CDS |
| CGTCCTTGCTTAGACCAAAT+TGG | 0.215592 | 5:+16323913 | None:intergenic |
| ACAATCAGAACTTACTTATT+AGG | 0.237831 | 5:+16322828 | None:intergenic |
| ATCAAATTATCTTGACTTGC+AGG | 0.274591 | 5:+16323080 | None:intergenic |
| AGTACCATAATTCTCTAATT+AGG | 0.289351 | 5:-16323583 | MsaT026066.1:CDS |
| ACATATGAAGATGATGAATA+TGG | 0.290862 | 5:-16325207 | MsaT026066.1:CDS |
| TTGTCCTAATTAGAGAATTA+TGG | 0.303893 | 5:+16323579 | None:intergenic |
| TGATTGGTTCCGCCGCAATT+TGG | 0.306685 | 5:+16322909 | None:intergenic |
| GTGACAACGTCGAAGCTTCT+TGG | 0.321956 | 5:+16322935 | None:intergenic |
| GAATTAATAGTTGCCCAATT+TGG | 0.329503 | 5:-16323927 | MsaT026066.1:CDS |
| TTTGCAGCATGTTCCTCAAT+AGG | 0.334456 | 5:+16323551 | None:intergenic |
| GCAGCTTCAACTCCACCTTT+TGG | 0.341287 | 5:+16322957 | None:intergenic |
| AAATTCCTCCGACAGATAAA+AGG | 0.354413 | 5:-16323107 | MsaT026066.1:CDS |
| CATATAGTCAAATGCAATAA+TGG | 0.354919 | 5:-16323224 | MsaT026066.1:intron |
| TTGGTTTCTAAAGGCTTTGA+AGG | 0.384106 | 5:-16324856 | MsaT026066.1:CDS |
| TTTGCTGGGATGACGACAAC+TGG | 0.403764 | 5:-16323825 | MsaT026066.1:CDS |
| GTCCTTGCTTAGACCAAATT+GGG | 0.415207 | 5:+16323914 | None:intergenic |
| TAAAGGCTTTGAAGGAAAAT+GGG | 0.419353 | 5:-16324848 | MsaT026066.1:CDS |
| TTTGGAACATCGGGTGCATT+GGG | 0.427474 | 5:+16323047 | None:intergenic |
| AAATACATTGTAAAATTCAT+AGG | 0.433492 | 5:+16325077 | None:intergenic |
| TTGGGGCCTAGCTTATTTGA+AGG | 0.438270 | 5:-16323856 | MsaT026066.1:CDS |
| GCAAAGTTGTTGGTTTCTAA+AGG | 0.440350 | 5:-16324865 | MsaT026066.1:CDS |
| CCATCATTATTTGGAACATC+GGG | 0.445060 | 5:+16323038 | None:intergenic |
| ATTTGGAACATCGGGTGCAT+TGG | 0.454988 | 5:+16323046 | None:intergenic |
| CCATGAGTTATTAGATGATA+AGG | 0.455510 | 5:-16324797 | MsaT026066.1:CDS |
| GAACTAGTACTGTTGATGAA+TGG | 0.456158 | 5:-16325140 | MsaT026066.1:CDS |
| ACAATTCCGCGAGTCATGAT+TGG | 0.463296 | 5:+16322893 | None:intergenic |
| TAGACGACCACCATCAACTT+TGG | 0.465253 | 5:+16323424 | None:intergenic |
| CTTTCTCTTCTCCATCGAAA+AGG | 0.467284 | 5:+16323269 | None:intergenic |
| TAAGAAATAATGCTAGTGAT+TGG | 0.472650 | 5:-16325260 | MsaT026066.1:CDS |
| TTAGAGAAATCAATAGATAC+AGG | 0.477570 | 5:-16324664 | MsaT026066.1:intron |
| CGACATCATACCAAAGTTGA+TGG | 0.478069 | 5:-16323434 | MsaT026066.1:CDS |
| AACTAGTACTGTTGATGAAT+GGG | 0.484545 | 5:-16325139 | MsaT026066.1:CDS |
| TGGATTAACTCAAACGCATA+TGG | 0.491586 | 5:+16323518 | None:intergenic |
| AAATCCAAAGGTCGGCCAAA+AGG | 0.496241 | 5:-16322987 | MsaT026066.1:CDS |
| TGGATAGGATCACAAAGGGT+TGG | 0.496334 | 5:-16322741 | MsaT026066.1:intron |
| TAGTTGTAGCGCAAAGTTGT+TGG | 0.498154 | 5:-16324875 | MsaT026066.1:CDS |
| CCAAAAGGTTCAAGGCCAAA+AGG | 0.499841 | 5:-16322972 | MsaT026066.1:CDS |
| GAGTCTGAAGATAATCCATC+AGG | 0.500480 | 5:-16324997 | MsaT026066.1:CDS |
| ATAATTGTTACCTGTCTGAA+TGG | 0.504420 | 5:+16323463 | None:intergenic |
| ACCATCATTATTTGGAACAT+CGG | 0.512682 | 5:+16323037 | None:intergenic |
| GAATTTGTTTGTCATCGAGC+TGG | 0.517742 | 5:-16324961 | MsaT026066.1:CDS |
| CCAAGCTGAGGTTCTTGATG+TGG | 0.518896 | 5:+16325162 | None:intergenic |
| AAATATGCTGCCATTCAGAC+AGG | 0.519399 | 5:-16323473 | MsaT026066.1:CDS |
| ATATTATTGTTATCAAAAGC+AGG | 0.524397 | 5:-16324721 | MsaT026066.1:CDS |
| CATCTAATAACTCATGGTTG+TGG | 0.528510 | 5:+16324803 | None:intergenic |
| TAGACAATTCAATCTCATGT+TGG | 0.528559 | 5:+16323498 | None:intergenic |
| CCCGATGTTCCAAATAATGA+TGG | 0.529209 | 5:-16323038 | MsaT026066.1:CDS |
| AAAGGAAACGGAAATCTTCA+CGG | 0.530189 | 5:-16324900 | MsaT026066.1:CDS |
| AAGGTCGGCCAAAAGGTTCA+AGG | 0.530766 | 5:-16322980 | MsaT026066.1:CDS |
| AATAGTCCTTCAAATAAGCT+AGG | 0.536211 | 5:+16323850 | None:intergenic |
| ATGGTGGTCGTCTAGTAAGC+TGG | 0.537867 | 5:-16323415 | MsaT026066.1:CDS |
| TTCTTGGATAGGATCACAAA+GGG | 0.540933 | 5:-16322745 | MsaT026066.1:intron |
| CCTTATCATCTAATAACTCA+TGG | 0.545462 | 5:+16324797 | None:intergenic |
| CGTTGTCACGTTCCAAATTG+CGG | 0.556435 | 5:-16322921 | MsaT026066.1:CDS |
| ATTGGGATGTTACGATAAGC+GGG | 0.561005 | 5:+16324760 | None:intergenic |
| TAGACATCAAGCAGGAGAAG+AGG | 0.565504 | 5:-16323621 | MsaT026066.1:CDS |
| GTCAAAATTAGACATCAAGC+AGG | 0.568777 | 5:-16323629 | MsaT026066.1:CDS |
| TTGTTTCAAAATCCAAAGGT+CGG | 0.583293 | 5:-16322995 | MsaT026066.1:CDS |
| CCTGTTGTTTCAAAATCCAA+AGG | 0.583885 | 5:-16322999 | MsaT026066.1:CDS |
| TGCCCAATTTGGTCTAAGCA+AGG | 0.585288 | 5:-16323916 | MsaT026066.1:CDS |
| AATTGGGATGTTACGATAAG+CGG | 0.587373 | 5:+16324759 | None:intergenic |
| CCACATCAAGAACCTCAGCT+TGG | 0.590609 | 5:-16325162 | MsaT026066.1:CDS |
| ATCATTAAAGACAAAAGAGA+GGG | 0.596933 | 5:-16323156 | MsaT026066.1:CDS |
| TGAGTTATTAGATGATAAGG+AGG | 0.622448 | 5:-16324794 | MsaT026066.1:CDS |
| AGGCTTTGAAGGAAAATGGG+TGG | 0.631084 | 5:-16324845 | MsaT026066.1:CDS |
| AAAGGTTCAAGGCCAAAAGG+TGG | 0.631199 | 5:-16322969 | MsaT026066.1:CDS |
| AATCATTAAAGACAAAAGAG+AGG | 0.632966 | 5:-16323157 | MsaT026066.1:CDS |
| TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 5:+16322840 | None:intergenic |
| GTTCTTGGATAGGATCACAA+AGG | 0.636100 | 5:-16322746 | MsaT026066.1:intron |
| GCGGAACCAATCATGACTCG+CGG | 0.676119 | 5:-16322899 | MsaT026066.1:CDS |
| CATCATACCAAAGTTGATGG+TGG | 0.683172 | 5:-16323431 | MsaT026066.1:CDS |
| ACAGTACTAGTTCCAAGCTG+AGG | 0.683821 | 5:+16325150 | None:intergenic |
| TGTCACGTTCCAAATTGCGG+CGG | 0.703136 | 5:-16322918 | MsaT026066.1:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 16322714 | 16325295 | 16322714 | ID=MsaG026066 |
| Chr5 | mRNA | 16322714 | 16325295 | 16322714 | ID=MsaT026066.1;Parent=MsaG026066 |
| Chr5 | exon | 16322714 | 16322756 | 16322714 | ID=MsaT026066.1.exon5;Parent=MsaT026066.1 |
| Chr5 | CDS | 16322714 | 16322756 | 16322714 | ID=cds.MsaT026066.1;Parent=MsaT026066.1 |
| Chr5 | exon | 16322843 | 16323182 | 16322843 | ID=MsaT026066.1.exon4;Parent=MsaT026066.1 |
| Chr5 | CDS | 16322843 | 16323182 | 16322843 | ID=cds.MsaT026066.1;Parent=MsaT026066.1 |
| Chr5 | exon | 16323225 | 16323663 | 16323225 | ID=MsaT026066.1.exon3;Parent=MsaT026066.1 |
| Chr5 | CDS | 16323225 | 16323663 | 16323225 | ID=cds.MsaT026066.1;Parent=MsaT026066.1 |
| Chr5 | exon | 16323749 | 16323969 | 16323749 | ID=MsaT026066.1.exon2;Parent=MsaT026066.1 |
| Chr5 | CDS | 16323749 | 16323969 | 16323749 | ID=cds.MsaT026066.1;Parent=MsaT026066.1 |
| Chr5 | exon | 16324665 | 16325295 | 16324665 | ID=MsaT026066.1.exon1;Parent=MsaT026066.1 |
| Chr5 | CDS | 16324665 | 16325295 | 16324665 | ID=cds.MsaT026066.1;Parent=MsaT026066.1 |
| Gene Sequence |
| Protein sequence |