Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026067 | AES95614.2 | 95.324 | 278 | 12 | 1 | 1 | 277 | 1 | 278 | 0.0 | 547 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026067 | sp|C0SVS4|PHLB_ARATH | 50.871 | 287 | 119 | 11 | 2 | 274 | 1 | 279 | 4.78e-77 | 238 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026067 | tr|G7K874|G7K874_MEDTR | 95.324 | 278 | 12 | 1 | 1 | 277 | 1 | 278 | 0.0 | 547 |
Gene ID | Type | Classification |
---|---|---|
MsaG026067 | TF | GARP-G2-like |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026067 | MtrunA17_Chr5g0409731 | 94.909 | 275 | 13 | 1 | 1 | 274 | 1 | 275 | 0.0 | 538 |
MsaG026067 | MtrunA17_Chr8g0356501 | 46.860 | 207 | 86 | 6 | 1 | 195 | 13 | 207 | 1.26e-52 | 174 |
MsaG026067 | MtrunA17_Chr2g0321461 | 50.802 | 187 | 82 | 4 | 18 | 194 | 38 | 224 | 6.97e-51 | 171 |
MsaG026067 | MtrunA17_Chr6g0461641 | 50.777 | 193 | 85 | 4 | 18 | 204 | 35 | 223 | 6.70e-50 | 169 |
MsaG026067 | MtrunA17_Chr2g0310011 | 53.595 | 153 | 56 | 4 | 10 | 160 | 22 | 161 | 5.00e-48 | 163 |
MsaG026067 | MtrunA17_Chr7g0254981 | 55.245 | 143 | 55 | 2 | 25 | 167 | 50 | 183 | 2.70e-47 | 159 |
MsaG026067 | MtrunA17_Chr4g0042451 | 51.592 | 157 | 69 | 3 | 18 | 171 | 10 | 162 | 9.91e-46 | 157 |
MsaG026067 | MtrunA17_Chr2g0291021 | 39.200 | 250 | 132 | 5 | 25 | 270 | 49 | 282 | 9.24e-45 | 154 |
MsaG026067 | MtrunA17_Chr5g0417521 | 51.282 | 156 | 70 | 4 | 19 | 171 | 9 | 161 | 3.45e-44 | 153 |
MsaG026067 | MtrunA17_Chr2g0290991 | 50.588 | 170 | 74 | 5 | 7 | 171 | 20 | 184 | 2.15e-43 | 150 |
MsaG026067 | MtrunA17_Chr1g0197171 | 51.923 | 156 | 67 | 4 | 18 | 171 | 37 | 186 | 3.42e-43 | 149 |
MsaG026067 | MtrunA17_Chr7g0261911 | 49.645 | 141 | 59 | 2 | 25 | 165 | 262 | 390 | 4.81e-36 | 134 |
MsaG026067 | MtrunA17_Chr7g0274471 | 45.399 | 163 | 77 | 3 | 25 | 187 | 218 | 368 | 1.38e-35 | 132 |
MsaG026067 | MtrunA17_Chr1g0190301 | 46.622 | 148 | 67 | 3 | 18 | 165 | 168 | 303 | 5.60e-34 | 127 |
MsaG026067 | MtrunA17_Chr1g0175091 | 44.755 | 143 | 65 | 2 | 25 | 167 | 258 | 386 | 1.08e-33 | 127 |
MsaG026067 | MtrunA17_Chr7g0258551 | 41.497 | 147 | 73 | 4 | 25 | 171 | 212 | 345 | 2.55e-30 | 117 |
MsaG026067 | MtrunA17_Chr7g0242521 | 38.732 | 142 | 69 | 3 | 25 | 162 | 13 | 140 | 2.90e-25 | 100 |
MsaG026067 | MtrunA17_Chr1g0175071 | 34.286 | 175 | 91 | 4 | 12 | 178 | 159 | 317 | 1.40e-20 | 89.4 |
MsaG026067 | MtrunA17_Chr1g0175081 | 49.231 | 65 | 33 | 0 | 27 | 91 | 24 | 88 | 5.54e-19 | 80.1 |
MsaG026067 | MtrunA17_Chr1g0210911 | 47.059 | 102 | 42 | 3 | 1 | 97 | 1 | 95 | 1.15e-18 | 84.3 |
MsaG026067 | MtrunA17_Chr7g0243081 | 62.069 | 58 | 22 | 0 | 21 | 78 | 67 | 124 | 1.91e-18 | 84.0 |
MsaG026067 | MtrunA17_Chr1g0162931 | 58.209 | 67 | 28 | 0 | 12 | 78 | 5 | 71 | 2.75e-18 | 82.4 |
MsaG026067 | MtrunA17_Chr6g0479431 | 61.667 | 60 | 23 | 0 | 26 | 85 | 203 | 262 | 1.39e-17 | 81.6 |
MsaG026067 | MtrunA17_Chr8g0366281 | 69.811 | 53 | 16 | 0 | 26 | 78 | 174 | 226 | 1.93e-17 | 81.3 |
MsaG026067 | MtrunA17_Chr2g0288601 | 70.000 | 50 | 15 | 0 | 26 | 75 | 72 | 121 | 1.94e-17 | 76.6 |
MsaG026067 | MtrunA17_Chr5g0410741 | 69.811 | 53 | 16 | 0 | 26 | 78 | 220 | 272 | 6.17e-17 | 80.1 |
MsaG026067 | MtrunA17_Chr1g0154261 | 67.925 | 53 | 17 | 0 | 26 | 78 | 127 | 179 | 6.91e-17 | 79.0 |
MsaG026067 | MtrunA17_Chr8g0379121 | 51.389 | 72 | 28 | 1 | 7 | 78 | 100 | 164 | 8.29e-17 | 79.7 |
MsaG026067 | MtrunA17_Chr2g0320231 | 52.941 | 68 | 32 | 0 | 11 | 78 | 83 | 150 | 8.33e-17 | 79.3 |
MsaG026067 | MtrunA17_Chr3g0095611 | 48.611 | 72 | 30 | 1 | 7 | 78 | 8 | 72 | 1.55e-16 | 76.3 |
MsaG026067 | MtrunA17_Chr3g0109981 | 67.925 | 53 | 17 | 0 | 26 | 78 | 275 | 327 | 1.60e-16 | 79.0 |
MsaG026067 | MtrunA17_Chr7g0258531 | 36.913 | 149 | 72 | 5 | 25 | 168 | 213 | 344 | 7.79e-16 | 76.6 |
MsaG026067 | MtrunA17_Chr2g0283951 | 48.611 | 72 | 37 | 0 | 4 | 75 | 68 | 139 | 2.60e-14 | 72.4 |
MsaG026067 | MtrunA17_Chr7g0255711 | 56.364 | 55 | 23 | 1 | 25 | 79 | 91 | 144 | 4.47e-12 | 65.1 |
MsaG026067 | MtrunA17_Chr7g0275401 | 40.000 | 90 | 43 | 3 | 25 | 114 | 192 | 270 | 4.84e-12 | 65.1 |
MsaG026067 | MtrunA17_Chr5g0402631 | 45.946 | 74 | 38 | 1 | 25 | 98 | 214 | 285 | 5.67e-12 | 65.1 |
MsaG026067 | MtrunA17_Chr4g0062921 | 54.098 | 61 | 26 | 1 | 25 | 85 | 235 | 293 | 5.83e-12 | 65.5 |
MsaG026067 | MtrunA17_Chr2g0304841 | 52.727 | 55 | 25 | 1 | 25 | 79 | 213 | 266 | 5.95e-12 | 65.9 |
MsaG026067 | MtrunA17_Chr4g0067981 | 56.364 | 55 | 23 | 1 | 25 | 79 | 215 | 268 | 6.04e-12 | 65.9 |
MsaG026067 | MtrunA17_Chr1g0198601 | 50.820 | 61 | 28 | 1 | 25 | 85 | 211 | 269 | 8.30e-12 | 64.7 |
MsaG026067 | MtrunA17_Chr4g0031961 | 54.545 | 55 | 24 | 1 | 25 | 79 | 131 | 184 | 1.07e-11 | 64.3 |
MsaG026067 | MtrunA17_Chr1g0161431 | 52.727 | 55 | 25 | 1 | 25 | 79 | 200 | 253 | 1.27e-11 | 64.7 |
MsaG026067 | MtrunA17_Chr4g0045361 | 54.098 | 61 | 26 | 1 | 25 | 85 | 274 | 332 | 1.51e-11 | 64.3 |
MsaG026067 | MtrunA17_Chr4g0009901 | 46.154 | 65 | 32 | 2 | 25 | 89 | 168 | 229 | 1.90e-11 | 63.2 |
MsaG026067 | MtrunA17_Chr1g0149841 | 54.237 | 59 | 26 | 1 | 21 | 79 | 187 | 244 | 2.30e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026067 | AT5G45580.2 | 50.871 | 287 | 119 | 11 | 2 | 274 | 1 | 279 | 4.86e-78 | 238 |
MsaG026067 | AT5G45580.1 | 51.673 | 269 | 109 | 10 | 20 | 274 | 2 | 263 | 5.29e-76 | 232 |
MsaG026067 | AT3G24120.1 | 52.747 | 182 | 82 | 3 | 16 | 194 | 32 | 212 | 3.11e-58 | 188 |
MsaG026067 | AT4G13640.1 | 50.286 | 175 | 85 | 1 | 16 | 188 | 28 | 202 | 1.62e-57 | 186 |
MsaG026067 | AT3G24120.2 | 51.892 | 185 | 82 | 4 | 16 | 194 | 32 | 215 | 5.66e-56 | 182 |
MsaG026067 | AT4G13640.2 | 49.438 | 178 | 85 | 2 | 16 | 188 | 28 | 205 | 2.76e-55 | 180 |
MsaG026067 | AT3G04030.3 | 48.241 | 199 | 82 | 4 | 7 | 193 | 29 | 218 | 2.62e-51 | 173 |
MsaG026067 | AT5G18240.1 | 48.205 | 195 | 88 | 4 | 7 | 193 | 29 | 218 | 6.47e-51 | 172 |
MsaG026067 | AT5G18240.4 | 48.205 | 195 | 88 | 4 | 7 | 193 | 29 | 218 | 6.47e-51 | 172 |
MsaG026067 | AT1G79430.2 | 41.921 | 229 | 99 | 7 | 10 | 217 | 21 | 236 | 1.15e-48 | 165 |
MsaG026067 | AT3G04030.2 | 47.236 | 199 | 83 | 5 | 7 | 193 | 29 | 217 | 2.92e-48 | 165 |
MsaG026067 | AT3G12730.1 | 47.273 | 165 | 69 | 4 | 18 | 173 | 16 | 171 | 1.01e-47 | 159 |
MsaG026067 | AT5G18240.5 | 47.179 | 195 | 88 | 5 | 7 | 193 | 29 | 216 | 1.43e-47 | 163 |
MsaG026067 | AT3G04030.1 | 46.231 | 199 | 80 | 5 | 7 | 193 | 29 | 212 | 1.40e-46 | 160 |
MsaG026067 | AT5G18240.2 | 42.793 | 222 | 102 | 6 | 7 | 220 | 29 | 233 | 6.18e-46 | 159 |
MsaG026067 | AT5G18240.3 | 42.793 | 222 | 102 | 6 | 7 | 220 | 29 | 233 | 6.18e-46 | 159 |
MsaG026067 | AT1G69580.1 | 48.795 | 166 | 80 | 2 | 18 | 178 | 27 | 192 | 4.19e-45 | 155 |
MsaG026067 | AT1G69580.2 | 47.904 | 167 | 81 | 2 | 18 | 178 | 27 | 193 | 2.48e-44 | 153 |
MsaG026067 | AT2G01060.1 | 54.545 | 143 | 54 | 2 | 25 | 167 | 15 | 146 | 1.31e-43 | 150 |
MsaG026067 | AT3G13040.3 | 46.250 | 160 | 76 | 2 | 25 | 181 | 241 | 393 | 1.23e-37 | 138 |
MsaG026067 | AT3G13040.1 | 46.250 | 160 | 76 | 2 | 25 | 181 | 241 | 393 | 1.23e-37 | 138 |
MsaG026067 | AT3G13040.2 | 46.250 | 160 | 76 | 2 | 25 | 181 | 241 | 393 | 1.23e-37 | 138 |
MsaG026067 | AT4G28610.1 | 45.000 | 160 | 76 | 3 | 25 | 184 | 225 | 372 | 1.08e-34 | 129 |
MsaG026067 | AT5G06800.1 | 45.455 | 143 | 65 | 3 | 25 | 167 | 192 | 321 | 4.94e-33 | 124 |
MsaG026067 | AT5G45580.3 | 40.741 | 216 | 107 | 10 | 73 | 274 | 16 | 224 | 5.14e-33 | 120 |
MsaG026067 | AT5G06800.2 | 44.056 | 143 | 72 | 3 | 25 | 167 | 192 | 326 | 9.86e-33 | 124 |
MsaG026067 | AT5G29000.1 | 44.828 | 145 | 67 | 2 | 25 | 167 | 188 | 321 | 2.58e-32 | 122 |
MsaG026067 | AT5G29000.3 | 44.828 | 145 | 67 | 2 | 25 | 167 | 188 | 321 | 2.58e-32 | 122 |
MsaG026067 | AT3G04450.4 | 44.521 | 146 | 66 | 2 | 25 | 167 | 198 | 331 | 4.30e-32 | 122 |
MsaG026067 | AT3G04450.2 | 44.521 | 146 | 66 | 2 | 25 | 167 | 198 | 331 | 4.30e-32 | 122 |
MsaG026067 | AT5G29000.2 | 44.828 | 145 | 67 | 2 | 25 | 167 | 231 | 364 | 4.41e-32 | 122 |
MsaG026067 | AT3G04450.1 | 44.521 | 146 | 66 | 2 | 25 | 167 | 238 | 371 | 6.08e-32 | 122 |
MsaG026067 | AT3G04030.5 | 46.309 | 149 | 61 | 3 | 57 | 193 | 1 | 142 | 9.23e-29 | 112 |
MsaG026067 | AT2G20400.2 | 40.764 | 157 | 82 | 2 | 27 | 183 | 233 | 378 | 1.23e-27 | 110 |
MsaG026067 | AT2G20400.1 | 40.127 | 157 | 82 | 2 | 27 | 183 | 233 | 377 | 6.97e-27 | 108 |
MsaG026067 | AT5G18240.6 | 42.759 | 145 | 66 | 4 | 57 | 193 | 1 | 136 | 2.84e-24 | 100 |
MsaG026067 | AT3G04030.4 | 43.624 | 149 | 59 | 4 | 57 | 193 | 1 | 136 | 5.29e-24 | 99.0 |
MsaG026067 | AT2G06020.1 | 46.296 | 108 | 38 | 3 | 21 | 113 | 82 | 184 | 5.98e-23 | 95.9 |
MsaG026067 | AT1G79430.1 | 47.009 | 117 | 49 | 3 | 57 | 171 | 1 | 106 | 1.32e-22 | 95.1 |
MsaG026067 | AT2G01060.2 | 48.148 | 108 | 45 | 2 | 60 | 167 | 1 | 97 | 5.13e-22 | 92.0 |
MsaG026067 | AT3G12730.2 | 38.889 | 126 | 59 | 4 | 57 | 173 | 1 | 117 | 5.02e-21 | 88.2 |
MsaG026067 | AT5G06800.3 | 54.688 | 64 | 29 | 0 | 25 | 88 | 192 | 255 | 7.86e-20 | 87.0 |
MsaG026067 | AT2G42660.1 | 69.811 | 53 | 16 | 0 | 26 | 78 | 51 | 103 | 3.02e-19 | 85.1 |
MsaG026067 | AT4G04605.1 | 55.556 | 63 | 28 | 0 | 16 | 78 | 5 | 67 | 5.89e-19 | 83.6 |
MsaG026067 | AT2G02060.2 | 51.765 | 85 | 37 | 1 | 1 | 81 | 1 | 85 | 8.11e-19 | 84.0 |
MsaG026067 | AT2G02060.1 | 51.765 | 85 | 37 | 1 | 1 | 81 | 1 | 85 | 8.11e-19 | 84.0 |
MsaG026067 | AT5G29000.4 | 53.623 | 69 | 32 | 0 | 25 | 93 | 231 | 299 | 1.74e-18 | 84.0 |
MsaG026067 | AT1G14600.1 | 56.000 | 75 | 31 | 1 | 6 | 78 | 2 | 76 | 2.60e-18 | 82.4 |
MsaG026067 | AT2G40260.1 | 57.812 | 64 | 27 | 0 | 15 | 78 | 72 | 135 | 4.45e-18 | 83.6 |
MsaG026067 | AT3G04450.3 | 56.897 | 58 | 25 | 0 | 25 | 82 | 238 | 295 | 4.65e-18 | 82.8 |
MsaG026067 | AT4G04580.1 | 46.250 | 80 | 38 | 1 | 14 | 93 | 3 | 77 | 3.85e-17 | 77.4 |
MsaG026067 | AT1G32240.2 | 69.811 | 53 | 16 | 0 | 26 | 78 | 214 | 266 | 5.01e-17 | 80.5 |
MsaG026067 | AT1G32240.1 | 69.811 | 53 | 16 | 0 | 26 | 78 | 214 | 266 | 6.43e-17 | 80.1 |
MsaG026067 | AT5G16560.1 | 67.925 | 53 | 17 | 0 | 26 | 78 | 220 | 272 | 8.00e-17 | 80.1 |
MsaG026067 | AT5G42630.2 | 66.038 | 53 | 18 | 0 | 26 | 78 | 106 | 158 | 9.87e-17 | 77.4 |
MsaG026067 | AT2G38300.1 | 61.404 | 57 | 22 | 0 | 22 | 78 | 51 | 107 | 1.39e-16 | 79.0 |
MsaG026067 | AT5G42630.1 | 66.038 | 53 | 18 | 0 | 26 | 78 | 106 | 158 | 2.34e-16 | 77.4 |
MsaG026067 | AT4G17695.1 | 66.038 | 53 | 18 | 0 | 26 | 78 | 165 | 217 | 4.06e-16 | 77.4 |
MsaG026067 | AT4G37180.1 | 55.932 | 59 | 24 | 1 | 27 | 85 | 212 | 268 | 3.29e-13 | 69.3 |
MsaG026067 | AT4G37180.2 | 55.932 | 59 | 24 | 1 | 27 | 85 | 219 | 275 | 3.53e-13 | 69.3 |
MsaG026067 | AT3G25790.1 | 39.286 | 112 | 51 | 4 | 30 | 128 | 201 | 308 | 4.39e-13 | 68.9 |
MsaG026067 | AT3G10760.1 | 51.351 | 74 | 31 | 3 | 6 | 79 | 90 | 158 | 8.07e-13 | 68.2 |
MsaG026067 | AT1G49560.1 | 44.330 | 97 | 49 | 2 | 25 | 121 | 192 | 283 | 1.69e-12 | 67.0 |
MsaG026067 | AT4G04555.1 | 46.032 | 63 | 34 | 0 | 16 | 78 | 5 | 67 | 2.14e-12 | 62.8 |
MsaG026067 | AT5G05090.1 | 56.364 | 55 | 23 | 1 | 25 | 79 | 81 | 134 | 2.63e-12 | 65.9 |
MsaG026067 | AT3G46640.2 | 54.545 | 55 | 24 | 1 | 25 | 79 | 144 | 197 | 5.50e-12 | 65.5 |
MsaG026067 | AT3G46640.1 | 54.545 | 55 | 24 | 1 | 25 | 79 | 144 | 197 | 5.50e-12 | 65.5 |
MsaG026067 | AT5G59570.2 | 54.545 | 55 | 24 | 1 | 25 | 79 | 141 | 194 | 5.57e-12 | 65.1 |
MsaG026067 | AT5G59570.1 | 54.545 | 55 | 24 | 1 | 25 | 79 | 141 | 194 | 5.57e-12 | 65.1 |
MsaG026067 | AT3G46640.3 | 54.545 | 55 | 24 | 1 | 25 | 79 | 144 | 197 | 5.86e-12 | 65.5 |
MsaG026067 | AT5G58080.1 | 56.364 | 55 | 23 | 1 | 25 | 79 | 194 | 247 | 6.63e-12 | 65.9 |
MsaG026067 | AT2G40970.1 | 56.364 | 55 | 23 | 1 | 25 | 79 | 105 | 158 | 9.75e-12 | 63.9 |
MsaG026067 | AT2G03500.1 | 54.098 | 61 | 26 | 1 | 25 | 85 | 233 | 291 | 2.28e-11 | 63.9 |
MsaG026067 | AT1G13300.1 | 50.820 | 61 | 28 | 1 | 25 | 85 | 181 | 239 | 3.55e-11 | 63.2 |
MsaG026067 | AT3G16857.3 | 52.727 | 55 | 25 | 1 | 25 | 79 | 167 | 220 | 3.71e-11 | 63.5 |
MsaG026067 | AT3G16857.2 | 52.727 | 55 | 25 | 1 | 25 | 79 | 237 | 290 | 4.23e-11 | 63.5 |
MsaG026067 | AT3G16857.1 | 52.727 | 55 | 25 | 1 | 25 | 79 | 237 | 290 | 4.51e-11 | 63.5 |
MsaG026067 | AT2G01760.3 | 52.727 | 55 | 25 | 1 | 25 | 79 | 135 | 188 | 6.40e-11 | 62.4 |
Find 69 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGAGCATGATTCTTATTA+TGG | 0.152516 | 5:+16356054 | None:intergenic |
TGCCTTAGTGCTTCTCCTAT+TGG | 0.203121 | 5:+16356710 | None:intergenic |
ATTAACCTTAGAACAGATTT+AGG | 0.207865 | 5:+16357860 | None:intergenic |
TAAATCTGTTCTAAGGTTAA+TGG | 0.217308 | 5:-16357858 | MsaT026067.1:CDS |
GCCTTAGTGCTTCTCCTATT+GGG | 0.237177 | 5:+16356711 | None:intergenic |
CTAAGGTTAATGGGATTAAA+AGG | 0.242641 | 5:-16357848 | MsaT026067.1:CDS |
CTCAGCTTTGTCAAACTTCA+TGG | 0.244936 | 5:-16356126 | MsaT026067.1:CDS |
GTCCACCTCAACCTCGGCTT+CGG | 0.264907 | 5:+16358304 | None:intergenic |
CAGCTAGACTTAAACATTAA+AGG | 0.275731 | 5:-16355957 | MsaT026067.1:CDS |
ATCAAATATGGTTTCATATA+GGG | 0.282950 | 5:-16355895 | MsaT026067.1:CDS |
AGAGGCTCAAGGGAAGTATT+TGG | 0.284186 | 5:-16356237 | MsaT026067.1:CDS |
TCATTTGAAGAGCCATTTAC+AGG | 0.303807 | 5:-16357813 | MsaT026067.1:intron |
AATTTCAGTAACCATTCTTC+AGG | 0.305474 | 5:-16356998 | MsaT026067.1:CDS |
AAATCTGTTCTAAGGTTAAT+GGG | 0.321195 | 5:-16357857 | MsaT026067.1:CDS |
AGCTGAAATGGAATCAAATA+TGG | 0.349100 | 5:-16355907 | MsaT026067.1:CDS |
AATCAAATATGGTTTCATAT+AGG | 0.356297 | 5:-16355896 | MsaT026067.1:CDS |
GGAGGGAGAGGAGGAATTGA+AGG | 0.362824 | 5:-16358361 | MsaT026067.1:CDS |
ACTAGGGACAGAAGAAAATA+AGG | 0.364063 | 5:-16356012 | MsaT026067.1:CDS |
TAGAAGTTGTTACCTGTAAA+TGG | 0.368392 | 5:+16357801 | None:intergenic |
TAATGCATCAAAAGCTCAAT+TGG | 0.371170 | 5:-16356159 | MsaT026067.1:CDS |
AATTGAAGTTCAAAAGAGAT+TGG | 0.388648 | 5:-16356684 | MsaT026067.1:CDS |
ATGATGGAAAGTGGAGGGAG+AGG | 0.397519 | 5:-16358373 | MsaT026067.1:CDS |
CGACTCCTAAATCTGTTCTA+AGG | 0.397762 | 5:-16357865 | MsaT026067.1:CDS |
TCCACCTCAACCTCGGCTTC+GGG | 0.399137 | 5:+16358305 | None:intergenic |
TCAGGGACTAATACCAACTA+TGG | 0.403640 | 5:-16356980 | MsaT026067.1:CDS |
TGCCTTGTCCATCTTGAGAA+AGG | 0.418880 | 5:+16356186 | None:intergenic |
TTCATTATCACCTCCATAGT+TGG | 0.436053 | 5:+16356967 | None:intergenic |
ATCTGTAGATGGAGCTGAAA+TGG | 0.439210 | 5:-16355919 | MsaT026067.1:CDS |
TTCAATTATCAAGAAGTACT+AGG | 0.442529 | 5:-16356029 | MsaT026067.1:CDS |
GGAGAAGGTATGATGGAAAG+TGG | 0.459223 | 5:-16358382 | None:intergenic |
GGAGGAATTGAAGGGTATGA+TGG | 0.463626 | 5:-16358352 | MsaT026067.1:CDS |
GAACTAAAGCCTCAAGTTGA+AGG | 0.464648 | 5:-16355990 | MsaT026067.1:CDS |
TAAATTGCAAATGAGAATAG+AGG | 0.480939 | 5:-16356255 | MsaT026067.1:CDS |
TGGTATTAGTCCCTGAAGAA+TGG | 0.487795 | 5:+16356987 | None:intergenic |
AACAAAGCGGTCGTGAAGAT+CGG | 0.492450 | 5:+16358279 | None:intergenic |
ATTCACAGAGAAATCCCAAT+AGG | 0.498124 | 5:-16356725 | MsaT026067.1:intron |
GTTGACGCTGTCACAAAGCT+TGG | 0.498295 | 5:-16358259 | MsaT026067.1:CDS |
ATTTCAGTAACCATTCTTCA+GGG | 0.498736 | 5:-16356997 | MsaT026067.1:CDS |
AATGAACTTGTATCTGTAGA+TGG | 0.501826 | 5:-16355930 | MsaT026067.1:CDS |
ATGGAAAGTGGAGGGAGAGG+AGG | 0.521924 | 5:-16358370 | MsaT026067.1:CDS |
AACTATGGAGGTGATAATGA+AGG | 0.530299 | 5:-16356965 | MsaT026067.1:CDS |
GAGGGAGAGGAGGAATTGAA+GGG | 0.537312 | 5:-16358360 | MsaT026067.1:CDS |
ACCCGAAGCCGAGGTTGAGG+TGG | 0.538160 | 5:-16358306 | MsaT026067.1:CDS |
GAGACCCGAAGCCGAGGTTG+AGG | 0.538216 | 5:-16358309 | MsaT026067.1:CDS |
AACTAAAGCCTCAAGTTGAA+GGG | 0.540564 | 5:-16355989 | MsaT026067.1:CDS |
TCAATTATCAAGAAGTACTA+GGG | 0.553916 | 5:-16356028 | MsaT026067.1:CDS |
ACTAAAGCCTCAAGTTGAAG+GGG | 0.554788 | 5:-16355988 | MsaT026067.1:CDS |
TCCCAATAGGAGAAGCACTA+AGG | 0.559258 | 5:-16356712 | MsaT026067.1:CDS |
CAAACAAGCCTTTCTCAAGA+TGG | 0.560229 | 5:-16356194 | MsaT026067.1:CDS |
AAGGTATGATGGAAAGTGGA+GGG | 0.560716 | 5:-16358378 | None:intergenic |
ACTATGGAGGTGATAATGAA+GGG | 0.578144 | 5:-16356964 | MsaT026067.1:CDS |
GGCTCAAGGGAAGTATTTGG+AGG | 0.583375 | 5:-16356234 | MsaT026067.1:CDS |
GAAGGTATGATGGAAAGTGG+AGG | 0.584543 | 5:-16358379 | None:intergenic |
ATTCTGCAGAAGTATAGACT+TGG | 0.585105 | 5:-16357284 | MsaT026067.1:intron |
GACGCTGTCACAAAGCTTGG+TGG | 0.598228 | 5:-16358256 | MsaT026067.1:CDS |
AAATGAGAATAGAGGCTCAA+GGG | 0.615268 | 5:-16356247 | MsaT026067.1:CDS |
CAAATGAGAATAGAGGCTCA+AGG | 0.629250 | 5:-16356248 | MsaT026067.1:CDS |
TGACGAGAGACCCGAAGCCG+AGG | 0.631016 | 5:-16358315 | MsaT026067.1:CDS |
AGAAGAGGTACATACTGTCA+GGG | 0.640171 | 5:+16358233 | None:intergenic |
CTATGGAGGTGATAATGAAG+GGG | 0.661113 | 5:-16356963 | MsaT026067.1:CDS |
GGGACTAATACCAACTATGG+AGG | 0.669862 | 5:-16356977 | MsaT026067.1:CDS |
CTAGACTTAAACATTAAAGG+TGG | 0.670077 | 5:-16355954 | MsaT026067.1:CDS |
ATGGAGGTGATAATGAAGGG+GGG | 0.671828 | 5:-16356961 | MsaT026067.1:intron |
TATGGAGGTGATAATGAAGG+GGG | 0.676383 | 5:-16356962 | MsaT026067.1:CDS |
TCGGTTGTCCACCTCAACCT+CGG | 0.676640 | 5:+16358298 | None:intergenic |
AGCCTTTCTCAAGATGGACA+AGG | 0.682280 | 5:-16356188 | MsaT026067.1:CDS |
GAGATTGGAAGAACAACTTG+AGG | 0.683401 | 5:-16356669 | MsaT026067.1:intron |
TTGTGACAGCGTCAACAAAG+CGG | 0.705022 | 5:+16358266 | None:intergenic |
CTAAAGCCTCAAGTTGAAGG+GGG | 0.707595 | 5:-16355987 | MsaT026067.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 16355881 | 16358395 | 16355881 | ID=MsaG026067 |
Chr5 | mRNA | 16355881 | 16358395 | 16355881 | ID=MsaT026067.1;Parent=MsaG026067 |
Chr5 | exon | 16355881 | 16356285 | 16355881 | ID=MsaT026067.1.exon6;Parent=MsaT026067.1 |
Chr5 | CDS | 16355881 | 16356285 | 16355881 | ID=cds.MsaT026067.1;Parent=MsaT026067.1 |
Chr5 | exon | 16356670 | 16356739 | 16356670 | ID=MsaT026067.1.exon5;Parent=MsaT026067.1 |
Chr5 | CDS | 16356670 | 16356739 | 16356670 | ID=cds.MsaT026067.1;Parent=MsaT026067.1 |
Chr5 | exon | 16356962 | 16357034 | 16356962 | ID=MsaT026067.1.exon4;Parent=MsaT026067.1 |
Chr5 | CDS | 16356962 | 16357034 | 16356962 | ID=cds.MsaT026067.1;Parent=MsaT026067.1 |
Chr5 | exon | 16357237 | 16357297 | 16357237 | ID=MsaT026067.1.exon3;Parent=MsaT026067.1 |
Chr5 | CDS | 16357237 | 16357297 | 16357237 | ID=cds.MsaT026067.1;Parent=MsaT026067.1 |
Chr5 | exon | 16357814 | 16357890 | 16357814 | ID=MsaT026067.1.exon2;Parent=MsaT026067.1 |
Chr5 | CDS | 16357814 | 16357890 | 16357814 | ID=cds.MsaT026067.1;Parent=MsaT026067.1 |
Chr5 | exon | 16358248 | 16358395 | 16358248 | ID=MsaT026067.1.exon1;Parent=MsaT026067.1 |
Chr5 | CDS | 16358248 | 16358395 | 16358248 | ID=cds.MsaT026067.1;Parent=MsaT026067.1 |
Gene Sequence |
Protein sequence |