AlfalfaGEDB | MsaG026147

M. sativa ssp. caerulea / MsaG026147

KEGG: K11446
GO: GO:0000003 GO:0000785 GO:0000792 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009826 GO:0009892 GO:0009893 GO:0009908 GO:0009987 GO:0010016 GO:0010033 GO:0010228 GO:0010468 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0014070 GO:0016043 GO:0016049 GO:0016569 GO:0016570 GO:0016577 GO:0019222 GO:0019538 GO:0022414 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032451 GO:0032452 GO:0032454 GO:0032501 GO:0032502 GO:0032989 GO:0033043 GO:0033044 GO:0033169 GO:0033993 GO:0035065 GO:0035067 GO:0036211 GO:0040007 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045815 GO:0048366 GO:0048367 GO:0048439 GO:0048518 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901983 GO:1901984 GO:1902275 GO:1905268 GO:2000756 GO:2000757 GO:2001251
PFAM: PF02375.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026147	XP_003612815.1	97.004	801	22	1	30	830	2	800	0.0	1623

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026147	sp\|Q336N8\|JM706_ORYSJ	53.403	764	298	13	33	773	6	734	0.0	753

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026147	tr\|G7KCC8\|G7KCC8_MEDTR	97.004	801	22	1	30	830	2	800	0.0	1623

TFs/TRs:

Gene ID	Type	Classification
MsaG026147	TR	Jumonji

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000113	MsaG026147	0.804638	3.313094e-49	4.980734e-47
MsaG001323	MsaG026147	0.807655	7.726869e-50	1.247048e-47
MsaG003072	MsaG026147	0.816686	8.453102e-52	1.705603e-49
MsaG003311	MsaG026147	0.806130	1.617947e-49	2.518605e-47
MsaG003859	MsaG026147	0.808435	5.282049e-50	8.686190e-48
MsaG003972	MsaG026147	0.823765	2.053595e-53	4.995150e-51
MsaG004152	MsaG026147	0.829669	8.121309e-55	2.328194e-52
MsaG004153	MsaG026147	0.815552	1.510052e-51	2.960159e-49
MsaG006174	MsaG026147	0.800650	2.182898e-48	2.995130e-46
MsaG006681	MsaG026147	0.812751	6.229731e-51	1.138223e-48
MsaG016247	MsaG026147	0.801630	1.379184e-48	1.934705e-46
MsaG017633	MsaG026147	0.806531	1.333099e-49	2.095011e-47
MsaG023967	MsaG026147	0.822420	4.215158e-53	9.886078e-51
MsaG026147	MsaG026794	0.840918	1.205491e-57	4.843600e-55
MsaG026147	MsaG028590	0.811337	1.262389e-50	2.227385e-48
MsaG026147	MsaG029381	0.819021	2.524832e-52	5.411668e-50
MsaG026147	MsaG034426	0.804966	2.831364e-49	4.289157e-47
MsaG026147	MsaG045870	0.811520	1.152809e-50	2.043129e-48
MsaG026147	MsaG002462	0.812343	7.645226e-51	1.382716e-48
MsaG026147	MsaG007261	0.823711	2.113650e-53	5.133702e-51
MsaG026147	MsaG030973	0.812449	7.247878e-51	1.314341e-48
MsaG026147	MsaG033622	0.802643	8.552374e-49	1.227816e-46
MsaG026147	MsaG035954	0.809630	2.938452e-50	4.973447e-48
MsaG026147	MsaG038282	0.803880	4.756975e-49	7.026873e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026147	MtrunA17_Chr5g0410721	97.004	801	22	1	30	830	2	800	0.0	1623
MsaG026147	MtrunA17_Chr1g0164731	57.645	484	204	1	99	581	27	510	0.0	583
MsaG026147	MtrunA17_Chr1g0164761	50.615	488	216	4	111	597	2	465	4.29e-172	509
MsaG026147	MtrunA17_Chr3g0116441	43.200	375	195	7	110	472	11	379	1.62e-80	284
MsaG026147	MtrunA17_Chr8g0380981	37.717	403	172	10	114	448	40	431	4.69e-61	224
MsaG026147	MtrunA17_Chr1g0189211	30.450	578	309	17	88	587	121	683	1.24e-60	224
MsaG026147	MtrunA17_Chr2g0303101	35.732	403	180	9	114	448	49	440	1.33e-58	216
MsaG026147	MtrunA17_Chr1g0199511	51.064	188	88	1	261	448	291	474	1.74e-57	214
MsaG026147	MtrunA17_Chr5g0397501	36.148	379	200	13	186	539	291	652	2.79e-52	198
MsaG026147	MtrunA17_Chr7g0214951	59.483	116	29	2	294	408	103	201	5.38e-39	144
MsaG026147	MtrunA17_Chr7g0261401	28.743	334	219	9	265	587	338	663	7.02e-33	136

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026147	AT5G46910.1	60.477	754	246	11	34	769	5	724	0.0	901
MsaG026147	AT5G46910.2	67.208	616	181	5	34	632	5	616	0.0	869
MsaG026147	AT3G48430.1	38.522	379	185	8	110	448	13	383	1.26e-67	245
MsaG026147	AT1G30810.3	36.090	399	186	9	114	452	56	445	1.38e-61	223
MsaG026147	AT1G30810.2	36.090	399	186	9	114	452	56	445	1.38e-61	223
MsaG026147	AT1G30810.1	36.090	399	186	9	114	452	56	445	1.38e-61	223
MsaG026147	AT2G34880.1	31.520	533	275	12	114	573	58	573	2.38e-61	223
MsaG026147	AT4G20400.1	34.729	406	189	9	114	453	53	448	8.56e-61	223
MsaG026147	AT1G08620.2	31.071	560	285	18	114	587	143	687	7.06e-60	222
MsaG026147	AT1G08620.4	31.071	560	285	18	114	587	143	687	7.06e-60	222
MsaG026147	AT1G08620.1	31.071	560	285	18	114	587	143	687	7.06e-60	222
MsaG026147	AT1G08620.3	31.071	560	285	18	114	587	157	701	7.20e-60	222
MsaG026147	AT1G63490.1	38.790	281	148	4	185	449	35	307	1.30e-58	218
MsaG026147	AT1G63490.4	38.790	281	148	4	185	449	288	560	1.49e-58	218
MsaG026147	AT1G63490.2	38.790	281	148	4	185	449	288	560	1.60e-58	218
MsaG026147	AT4G20400.2	34.430	395	183	9	125	453	7	391	5.21e-57	211
MsaG026147	AT5G04240.1	50.532	188	89	1	261	448	259	442	6.10e-56	210
MsaG026147	AT2G38950.1	25.719	556	334	18	111	608	102	636	2.35e-36	147
MsaG026147	AT1G63490.3	48.913	92	47	0	358	449	10	101	3.76e-24	109

Find 182 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCTTATAGACAGGGACTTTA+TGG	0.160704	5:-17461217	None:intergenic
ATTCTGATTCAGGAATATTT+AGG	0.200884	5:+17463288	MsaT026147.1:CDS
CAAATCAACTTTGCGTCTAT+TGG	0.212579	5:+17460717	MsaT026147.1:CDS
AAGGATATGAATACATATTT+TGG	0.248625	5:-17462743	None:intergenic
ATATCAACTTTATGATTAAC+AGG	0.250912	5:-17463627	None:intergenic
CAATAGACGCAAAGTTGATT+TGG	0.257289	5:-17460716	None:intergenic
ACATTGCCCCGGTGATTCTT+TGG	0.258512	5:-17458710	None:intergenic
TTATGGTCCATCAAAATATT+AGG	0.259778	5:-17461200	None:intergenic
TACACAGAATCAATTTGTTT+TGG	0.262680	5:+17462887	MsaT026147.1:CDS
GACAGTGATGATTCTGATTC+AGG	0.278508	5:+17463278	MsaT026147.1:CDS
ATTCCGTGAATATGAGAAAA+TGG	0.282693	5:+17460330	MsaT026147.1:CDS
GGAGATATGCACTTCTTAAC+AGG	0.291071	5:+17461486	MsaT026147.1:CDS
GGATTATTTGTTGGCAGTCC+TGG	0.299371	5:-17462855	None:intergenic
GCTCCAGAAGCTTCTAAATA+TGG	0.300151	5:+17459265	MsaT026147.1:CDS
GGAAATTGGTCGTGGGAAAA+TGG	0.302113	5:+17460429	MsaT026147.1:CDS
ATCACTGTCATTATCCACTA+TGG	0.307424	5:-17463264	None:intergenic
CCATAAAGTCCCTGTCTATA+AGG	0.310054	5:+17461217	MsaT026147.1:CDS
GTGCAGACTGCCCAAATGTT+AGG	0.320819	5:-17464047	None:intergenic
TAAGTTTGATACAAGCGATT+TGG	0.321047	5:+17459156	MsaT026147.1:CDS
TGTAGGCAAGCCCTAACATT+TGG	0.329953	5:+17464036	MsaT026147.1:intron
TTCTGATTCAGGAATATTTA+GGG	0.330786	5:+17463289	MsaT026147.1:CDS
GCCTCTCCGCCTTGCTGAAT+GGG	0.334178	5:+17460180	MsaT026147.1:CDS
ACGTCAGACACTTCTGGTTT+AGG	0.338162	5:-17462927	None:intergenic
GAGAGAGGATATTACGGATA+TGG	0.346339	5:+17462650	MsaT026147.1:CDS
CTTACTTGGAAAAGGAGTTT+TGG	0.351864	5:+17460404	MsaT026147.1:CDS
TCAAGTTTAAGCTCACAATA+AGG	0.353382	5:-17462807	None:intergenic
CTTTGCAAAGAAGTTCTTCA+TGG	0.354153	5:-17461523	None:intergenic
AGCCTCTCCGCCTTGCTGAA+TGG	0.359090	5:+17460179	MsaT026147.1:CDS
TTGGTGATTGGTTTCCTCTC+GGG	0.363286	5:+17461450	MsaT026147.1:CDS
AATAGACGCAAAGTTGATTT+GGG	0.363852	5:-17460715	None:intergenic
ATACCATATTTAGAAGCTTC+TGG	0.364051	5:-17459268	None:intergenic
TTGAGTGCTTCTGTACCTGC+TGG	0.368641	5:+17460106	MsaT026147.1:CDS
GGAGAATACACAGGACATTC+TGG	0.368911	5:-17459196	None:intergenic
AAGGAAACGTCAGACACTTC+TGG	0.371873	5:-17462933	None:intergenic
TATTATTTCAGAAACTTTCC+CGG	0.373608	5:+17460689	MsaT026147.1:intron
AACAGATTTGCAAGGGGAAA+TGG	0.376372	5:+17463666	MsaT026147.1:CDS
CCTTGCAAATCTGTTCTTCG+AGG	0.382466	5:-17463658	None:intergenic
GGAGGAATTTGAAGATCCTT+TGG	0.383247	5:+17459225	MsaT026147.1:CDS
CAATCTGAGGAGGTTAGAAA+TGG	0.383523	5:+17458962	MsaT026147.1:CDS
TCCACTATGGGCTTGATGTC+AGG	0.386848	5:-17463251	None:intergenic
ATTATGCTTTGCGTTGATAT+CGG	0.387143	5:+17458674	None:intergenic
CTTGGTGATTGGTTTCCTCT+CGG	0.388410	5:+17461449	MsaT026147.1:CDS
TGAGCAGGAAGATGGGATAT+TGG	0.390426	5:+17462692	MsaT026147.1:CDS
TCTTCAAATTCCTCCTTTGT+TGG	0.392588	5:-17459217	None:intergenic
TGGAGCCTTTGACGTTCTCT+TGG	0.392797	5:+17461157	MsaT026147.1:CDS
GGAGCCTTTGACGTTCTCTT+GGG	0.394203	5:+17461158	MsaT026147.1:CDS
ATGTCTTCCTGCCACTTACT+TGG	0.401021	5:+17460390	MsaT026147.1:CDS
GCAAAGTTGATTTGGGTAAC+CGG	0.403678	5:-17460708	None:intergenic
GAAAAGAAATCTGAAGGTTA+TGG	0.414459	5:+17463340	MsaT026147.1:CDS
ATATTTATCACTTGATTCAC+TGG	0.418019	5:-17463601	None:intergenic
TATCCCTGGTCACGCAGCTT+TGG	0.422015	5:+17461070	MsaT026147.1:CDS
CCACACTCTGGATTATTTGT+TGG	0.427777	5:-17462864	None:intergenic
TTCAAAACATTCTGAGCAGC+AGG	0.432668	5:+17463364	MsaT026147.1:CDS
GTAGGCAAGCCCTAACATTT+GGG	0.434796	5:+17464037	MsaT026147.1:intron
ATCAGCTTGGGAACAGCAAA+TGG	0.440002	5:+17460509	MsaT026147.1:CDS
TCTATTGGAAACGTCAATTC+CGG	0.440096	5:+17460732	MsaT026147.1:CDS
TTATCTGAGAGAGGATATTA+CGG	0.445667	5:+17462644	MsaT026147.1:CDS
CTGCACGGGTGGTGATCCTT+AGG	0.446893	5:+17464064	MsaT026147.1:CDS
TGAAACATCTTACAGGTAGA+AGG	0.451605	5:+17458926	MsaT026147.1:intron
TTGTCAAGTGATGGAGAAGA+TGG	0.453056	5:+17461137	MsaT026147.1:CDS
TTGATACAAGCGATTTGGAT+TGG	0.454805	5:+17459161	MsaT026147.1:CDS
TGAGTGCTTCTGTACCTGCT+GGG	0.455362	5:+17460107	MsaT026147.1:CDS
AATTCCAAAGCTGCGTGACC+AGG	0.455551	5:-17461074	None:intergenic
AAGAGTGGATGCAGCAGAAA+AGG	0.456673	5:-17462952	None:intergenic
CGCAGCTTTGGAATTTGAAA+GGG	0.456897	5:+17461082	MsaT026147.1:CDS
GCTTTGCGTTGATATCGGTT+TGG	0.460073	5:+17458679	MsaT026147.1:CDS
GTTGGTTACTAATGAAATCA+AGG	0.462719	5:+17461669	MsaT026147.1:CDS
AAGCCTGCATGGTACGCTCT+AGG	0.463569	5:-17461275	None:intergenic
GTTTCCAGCATTGTGCTAGT+TGG	0.477992	5:+17461651	MsaT026147.1:CDS
AAGATGTTTGAGCAGGAAGA+TGG	0.480595	5:+17462684	MsaT026147.1:CDS
TATAAGGCTGTTCAAAAGCC+AGG	0.481451	5:+17461233	MsaT026147.1:CDS
TTCTCTGCTTTAAGAGAGGA+AGG	0.482228	5:-17463320	None:intergenic
TCCTGCCACTTACTTGGAAA+AGG	0.482416	5:+17460396	MsaT026147.1:CDS
CACTGCATTCTTTAGGCTGA+GGG	0.482599	5:+17463122	MsaT026147.1:intron
TGCAGACTGCCCAAATGTTA+GGG	0.484313	5:-17464046	None:intergenic
AGAAGATTCGCATGCACTGT+TGG	0.484598	5:-17463174	None:intergenic
TGGAGGATCATTATTTGTAC+AGG	0.487458	5:+17460888	MsaT026147.1:CDS
AGTTCTTCATGGGGCAGTAA+AGG	0.488348	5:-17461512	None:intergenic
GCACGAAGATATTGCAGTGC+TGG	0.492162	5:+17460367	MsaT026147.1:CDS
AACATTTGGGCAGTCTGCAC+GGG	0.492932	5:+17464050	MsaT026147.1:CDS
TCCTGTGTATTCTCCAACAA+AGG	0.493715	5:+17459204	MsaT026147.1:CDS
TTTCAGAGAGCTGAAGCAAA+TGG	0.495918	5:+17462777	MsaT026147.1:CDS
TGCAGCAAAGATGTTTGAGC+AGG	0.497284	5:+17462677	MsaT026147.1:CDS
CTCGAAGAACAGATTTGCAA+GGG	0.497948	5:+17463659	MsaT026147.1:CDS
TAACATTTGGGCAGTCTGCA+CGG	0.498668	5:+17464049	MsaT026147.1:CDS
GAACAGCAAATGGAATTTGA+AGG	0.498848	5:+17460519	MsaT026147.1:CDS
ACGCAGCTTTGGAATTTGAA+AGG	0.502422	5:+17461081	MsaT026147.1:CDS
TTGAGAGGTTCACCTTCTTG+TGG	0.502769	5:+17459085	MsaT026147.1:CDS
TTCATTAAAACAACCCCAGC+AGG	0.503191	5:-17460121	None:intergenic
GTAACCAACTAGCACAATGC+TGG	0.505912	5:-17461655	None:intergenic
TTTGCAAAGAAGTTCTTCAT+GGG	0.510875	5:-17461522	None:intergenic
GAATATGCATGTGATGTTGA+TGG	0.516379	5:+17460460	MsaT026147.1:CDS
ATCAGTAGGAGAAGTTGAAA+AGG	0.523872	5:-17460488	None:intergenic
GATGCTTATTCATTCAAGCT+TGG	0.528112	5:+17461550	MsaT026147.1:CDS
CAGCATTCCAATGTATAGCA+TGG	0.528642	5:-17460843	None:intergenic
TTCCCTAGAGCGTACCATGC+AGG	0.529080	5:+17461272	MsaT026147.1:CDS
CAAAGTTGATTTGGGTAACC+GGG	0.532287	5:-17460707	None:intergenic
TGCTGTTTAGTATGTTTGCA+TGG	0.532827	5:+17460861	MsaT026147.1:CDS
AGCCTGCATGGTACGCTCTA+GGG	0.534040	5:-17461274	None:intergenic
AGGTAGAGTAAGACAATCTG+AGG	0.536728	5:+17458949	MsaT026147.1:CDS
TGATTCTGTGTACCACACTC+TGG	0.536807	5:-17462876	None:intergenic
CTGGTTGTAAACTTGAATCC+AGG	0.537765	5:-17460151	None:intergenic
AAAACTTGGTATGGTATCCC+TGG	0.538981	5:+17461056	MsaT026147.1:CDS
CCTCGAAGAACAGATTTGCA+AGG	0.541170	5:+17463658	MsaT026147.1:CDS
CTTCTCCTACTGATCAGCTT+GGG	0.543251	5:+17460497	MsaT026147.1:CDS
ACCTGACATCAAGCCCATAG+TGG	0.543321	5:+17463250	MsaT026147.1:CDS
GAGCTTTCATGATACAAAGC+AGG	0.543891	5:-17463203	None:intergenic
TGCTTTGTATCATGAAAGCT+CGG	0.546043	5:+17463205	MsaT026147.1:CDS
AGCTTTGGAATTTGAAAGGG+TGG	0.546161	5:+17461085	MsaT026147.1:CDS
ACTTGTCTGAGTGGCAGCAA+TGG	0.548160	5:-17459026	None:intergenic
ACTTCTCCTACTGATCAGCT+TGG	0.549870	5:+17460496	MsaT026147.1:CDS
AACCATGACTGAAGCCTGCA+TGG	0.553458	5:-17461286	None:intergenic
TGGTGATTGGTTTCCTCTCG+GGG	0.555189	5:+17461451	MsaT026147.1:CDS
TTACCATGGCGTAAGCATAC+AGG	0.555597	5:-17461794	None:intergenic
AGTGTTTCTTCTCATTCGCA+TGG	0.557562	5:+17461701	MsaT026147.1:CDS
AAGGCGGAGAGGCTGCACTC+TGG	0.558918	5:-17460170	None:intergenic
TCACTGTCATTATCCACTAT+GGG	0.560366	5:-17463263	None:intergenic
TCTTGTGGCACGAGATTGCA+TGG	0.561186	5:+17459100	MsaT026147.1:CDS
TGCAATCTCGTGCCACAAGA+AGG	0.561867	5:-17459097	None:intergenic
AGATGTTTGAGCAGGAAGAT+GGG	0.562717	5:+17462685	MsaT026147.1:CDS
AAATCTCTTGACCTCATCTG+TGG	0.564286	5:+17462606	MsaT026147.1:CDS
GAGCCTTTGACGTTCTCTTG+GGG	0.569053	5:+17461159	MsaT026147.1:CDS
CTGTTCCCAAGCTGATCAGT+AGG	0.569260	5:-17460502	None:intergenic
TGGTCCATCAAAATATTAGG+TGG	0.570687	5:-17461197	None:intergenic
TACCATGCAGGCTTCAGTCA+TGG	0.571674	5:+17461284	MsaT026147.1:CDS
ATAAGGCTGTTCAAAAGCCA+GGG	0.571901	5:+17461234	MsaT026147.1:CDS
AATCTGAGGAGGTTAGAAAT+GGG	0.573649	5:+17458963	MsaT026147.1:CDS
CTCTCGGGGCTATTGCAAGT+AGG	0.575441	5:+17461465	MsaT026147.1:CDS
AAGGTTATTACAAACTCCCC+TGG	0.576603	5:-17461251	None:intergenic
ATGAGATAACAAGTCTGAAG+AGG	0.577900	5:-17461594	None:intergenic
TTTCCCCAAGAGAACGTCAA+AGG	0.580508	5:-17461162	None:intergenic
ACAGAACCCATGCTATACAT+TGG	0.582151	5:+17460836	MsaT026147.1:CDS
TTGGTTACTAATGAAATCAA+GGG	0.584367	5:+17461670	MsaT026147.1:CDS
AGCAGAGAAAAGAAATCTGA+AGG	0.584819	5:+17463334	MsaT026147.1:CDS
TTCTGAAAGAGAACAAAGAG+TGG	0.588446	5:-17462967	None:intergenic
TTTGGCAGGAAATTGGTCGT+GGG	0.589186	5:+17460422	MsaT026147.1:CDS
TAGTATGTTTGCATGGCATG+TGG	0.590708	5:+17460868	MsaT026147.1:CDS
AGCATTCCAATGTATAGCAT+GGG	0.591957	5:-17460842	None:intergenic
ATATGAGAAAATGGCAAACA+AGG	0.593266	5:+17460339	MsaT026147.1:CDS
TGAGATAACAAGTCTGAAGA+GGG	0.601071	5:-17461593	None:intergenic
AGCTTTCATGATACAAAGCA+GGG	0.602726	5:-17463202	None:intergenic
GAGTGCTTCTGTACCTGCTG+GGG	0.605225	5:+17460108	MsaT026147.1:CDS
GAGGGGAATTGTGAAGAACT+TGG	0.605479	5:+17463140	MsaT026147.1:CDS
TTGAAGAAAGTCCTTCCTGA+AGG	0.607024	5:+17463546	MsaT026147.1:CDS
ATCTTCTGCAAATAAACCAA+AGG	0.609064	5:-17459241	None:intergenic
TCCTTTGTTGGAGAATACAC+AGG	0.609723	5:-17459205	None:intergenic
CTCTGAAACATATCTGACAA+AGG	0.609736	5:-17462762	None:intergenic
AATCATGCAAAACATTGCCC+CGG	0.611248	5:-17458721	None:intergenic
AAAATTCTAGGTTTCAACTG+TGG	0.612221	5:+17461407	MsaT026147.1:intron
ATTCCAAAGCTGCGTGACCA+GGG	0.613347	5:-17461073	None:intergenic
CATAACAGTCACGTTTGCAA+AGG	0.613703	5:-17461739	None:intergenic
ATTTGGGCAGTCTGCACGGG+TGG	0.619415	5:+17464053	MsaT026147.1:CDS
AGTGGAGGAGATGCTTTGAG+AGG	0.620104	5:+17459070	MsaT026147.1:CDS
AATCTCTTGACCTCATCTGT+GGG	0.626666	5:+17462607	MsaT026147.1:CDS
GCAGGTACAGAAGCACTCAA+AGG	0.631676	5:-17460103	None:intergenic
TGTGTTTGCTCCCACAGATG+AGG	0.633446	5:-17462617	None:intergenic
ACACACTCTTTATCTGAGAG+AGG	0.633663	5:+17462635	MsaT026147.1:CDS
TGTGTATTCTCCAACAAAGG+AGG	0.634871	5:+17459207	MsaT026147.1:CDS
CTTCAGTATCCCATTCAGCA+AGG	0.636604	5:-17460189	None:intergenic
GTTAGCAGCACTTGTCTGAG+TGG	0.638870	5:-17459035	None:intergenic
TCCCATTCAGCAAGGCGGAG+AGG	0.639564	5:-17460181	None:intergenic
TTTGAACAGCCTTATAGACA+GGG	0.640431	5:-17461226	None:intergenic
AACGTGATGAATAGAAGTGG+AGG	0.643226	5:+17459055	MsaT026147.1:CDS
TCTCTGCTTTAAGAGAGGAA+GGG	0.650459	5:-17463319	None:intergenic
TATGTTTGCATGGCATGTGG+AGG	0.652368	5:+17460871	MsaT026147.1:CDS
GAGATATGCACTTCTTAACA+GGG	0.652384	5:+17461487	MsaT026147.1:CDS
GGAGCAGAGGAACAGTCATG+AGG	0.652702	5:-17462990	None:intergenic
CATCCTGTATGCTTACGCCA+TGG	0.654178	5:+17461791	MsaT026147.1:CDS
TCGAAGAACAGATTTGCAAG+GGG	0.659146	5:+17463660	MsaT026147.1:CDS
TGCATGGTACGCTCTAGGGA+AGG	0.661692	5:-17461270	None:intergenic
TTGCAAAGAAGTTCTTCATG+GGG	0.664478	5:-17461521	None:intergenic
TAGAGTAAGACAATCTGAGG+AGG	0.665323	5:+17458952	MsaT026147.1:CDS
TATCAACTTTATGATTAACA+GGG	0.667769	5:-17463626	None:intergenic
GCTAACGTGATGAATAGAAG+TGG	0.674460	5:+17459052	MsaT026147.1:CDS
CCAACAAATAATCCAGAGTG+TGG	0.694859	5:+17462864	MsaT026147.1:CDS
ACTGCATTCTTTAGGCTGAG+GGG	0.698405	5:+17463123	MsaT026147.1:intron
AACATCTTACAGGTAGAAGG+AGG	0.700370	5:+17458929	MsaT026147.1:intron
CAGTATCCCATTCAGCAAGG+CGG	0.708241	5:-17460186	None:intergenic
TAAGGCTGTTCAAAAGCCAG+GGG	0.708748	5:+17461235	MsaT026147.1:CDS
GCTTTCATGATACAAAGCAG+GGG	0.718139	5:-17463201	None:intergenic
CTACTTGCAATAGCCCCGAG+AGG	0.722397	5:-17461464	None:intergenic
AGCATTAACTATCAGCACTG+CGG	0.747153	5:+17461026	MsaT026147.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	17458677	17464085	17458677	ID=MsaG026147
Chr5	mRNA	17458677	17464085	17458677	ID=MsaT026147.1;Parent=MsaG026147
Chr5	exon	17458677	17458763	17458677	ID=MsaT026147.1.exon1;Parent=MsaT026147.1
Chr5	CDS	17458677	17458763	17458677	ID=cds.MsaT026147.1;Parent=MsaT026147.1
Chr5	exon	17458941	17459286	17458941	ID=MsaT026147.1.exon2;Parent=MsaT026147.1
Chr5	CDS	17458941	17459286	17458941	ID=cds.MsaT026147.1;Parent=MsaT026147.1
Chr5	exon	17460083	17460239	17460083	ID=MsaT026147.1.exon3;Parent=MsaT026147.1
Chr5	CDS	17460083	17460239	17460083	ID=cds.MsaT026147.1;Parent=MsaT026147.1
Chr5	exon	17460321	17460540	17460321	ID=MsaT026147.1.exon4;Parent=MsaT026147.1
Chr5	CDS	17460321	17460540	17460321	ID=cds.MsaT026147.1;Parent=MsaT026147.1
Chr5	exon	17460700	17460753	17460700	ID=MsaT026147.1.exon5;Parent=MsaT026147.1
Chr5	CDS	17460700	17460753	17460700	ID=cds.MsaT026147.1;Parent=MsaT026147.1
Chr5	exon	17460830	17460909	17460830	ID=MsaT026147.1.exon6;Parent=MsaT026147.1
Chr5	CDS	17460830	17460909	17460830	ID=cds.MsaT026147.1;Parent=MsaT026147.1
Chr5	exon	17461028	17461305	17461028	ID=MsaT026147.1.exon7;Parent=MsaT026147.1
Chr5	CDS	17461028	17461305	17461028	ID=cds.MsaT026147.1;Parent=MsaT026147.1
Chr5	exon	17461417	17461812	17461417	ID=MsaT026147.1.exon8;Parent=MsaT026147.1
Chr5	CDS	17461417	17461812	17461417	ID=cds.MsaT026147.1;Parent=MsaT026147.1
Chr5	exon	17462601	17463019	17462601	ID=MsaT026147.1.exon9;Parent=MsaT026147.1
Chr5	CDS	17462601	17463019	17462601	ID=cds.MsaT026147.1;Parent=MsaT026147.1
Chr5	exon	17463137	17463385	17463137	ID=MsaT026147.1.exon10;Parent=MsaT026147.1
Chr5	CDS	17463137	17463385	17463137	ID=cds.MsaT026147.1;Parent=MsaT026147.1
Chr5	exon	17463534	17463731	17463534	ID=MsaT026147.1.exon11;Parent=MsaT026147.1
Chr5	CDS	17463534	17463731	17463534	ID=cds.MsaT026147.1;Parent=MsaT026147.1
Chr5	exon	17464041	17464085	17464041	ID=MsaT026147.1.exon12;Parent=MsaT026147.1
Chr5	CDS	17464041	17464085	17464041	ID=cds.MsaT026147.1;Parent=MsaT026147.1

Gene Sequence

>MsaT026147.1

ATGCTTTGCGTTGATATCGGTTTGGTTCATTTTCCAAAGAATCACCGGGGCAATGTTTTGCATGATTTTTTGCAGCTTAGTTTCGAAGTAGAAGGAGGTAGAGTAAGACAATCTGAGGAGGTTAGAAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAAGCCATTGCTGCCACTCAGACAAGTGCTGCTAACGTGATGAATAGAAGTGGAGGAGATGCTTTGAGAGGTTCACCTTCTTGTGGCACGAGATTGCATGGTAATCCAGATGTGTTTTTCAAGCGAAAGGTGGATAAGTTTGATACAAGCGATTTGGATTGGACTGATAAAATTCCAGAATGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAAGATCCTTTGGTTTATTTGCAGAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCGCCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTTTTAATGAAGGAGCAACCTGGATTCAAGTTTACAACCAGAGTGCAGCCTCTCCGCCTTGCTGAATGGGATACTGAAGACAAAGTCACATTTTTCATGAGTGGAAGAAATTATACATTCCGTGAATATGAGAAAATGGCAAACAAGGTTTTTGCACGAAGATATTGCAGTGCTGGATGTCTTCCTGCCACTTACTTGGAAAAGGAGTTTTGGCAGGAAATTGGTCGTGGGAAAATGGATACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCAACTTCTCCTACTGATCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCCCGGTTACCCAAATCAACTTTGCGTCTATTGGAAACGTCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGTATGTTTGCATGGCATGTGGAGGATCATTATTTGTACAGCATTAACTATCAGCACTGCGGAGCGTCAAAAACTTGGTATGGTATCCCTGGTCACGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTATTCTACTGATATTTTGTCAAGTGATGGAGAAGATGGAGCCTTTGACGTTCTCTTGGGGAAAACAACTTTATTTCCACCTAATATTTTGATGGACCATAAAGTCCCTGTCTATAAGGCTGTTCAAAAGCCAGGGGAGTTTGTAATAACCTTCCCTAGAGCGTACCATGCAGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCACTTGGTGATTGGTTTCCTCTCGGGGCTATTGCAAGTAGGAGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTTTGCAAAGAAGCGATGCTTATTCATTCAAGCTTGGAGCTTGAAGATTCAGACTTTCCCTCTTCAGACTTGTTATCTCATCATAGAACAAAGATAGCTTTCATTAATTTGTTGCGTTTCCAGCATTGTGCTAGTTGGTTACTAATGAAATCAAGGGCGTGTATTAGTGTTTCTTCTCATTCGCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGTTATGTAGCTTATGTTGACTGCAGCTGTCACATGCATCCTGTATGCTTACGCCATGCTGTTAAATCTCTTGACCTCATCTGTGGGAGCAAACACACTCTTTATCTGAGAGAGGATATTACGGATATGGAAGCTGCAGCAAAGATGTTTGAGCAGGAAGATGGGATATTGGATGAGATAAGCAAGCAATCCAAAAGTGACCAAAATATGTATTCATATCCTTTGTCAGATATGTTTCAGAGAGCTGAAGCAAATGGATATGAACCTTATTGTGAGCTTAAACTTGATTCTATGATTGAATTTTATACAACTCCAGGACTGCCAACAAATAATCCAGAGTGTGGTACACAGAATCAATTTGTTTTGGGGAATTGCTCAGAAATTCCTAAACCAGAAGTGTCTGACGTTTCCTTTTCTGCTGCATCCACTCTTTGTTCTCTTTCAGAACCTCATGACTGTTCCTCTGCTCCCAAAAATGCTGAGGGGAATTGTGAAGAACTTGGTGAAACAATATCCAACAGTGCATGCGAATCTTCTCTATCCCCTGCTTTGTATCATGAAAGCTCGGCTAAACTGCATGATATACAGAAACCTGACATCAAGCCCATAGTGGATAATGACAGTGATGATTCTGATTCAGGAATATTTAGGGTAAAGCGCCCTTCCTCTCTTAAAGCAGAGAAAAGAAATCTGAAGGTTATGGCTTCAAAACATTCTGAGCAGCAGGGACTTAAACGATTGAAGAAAGTCCTTCCTGAAGGAAAAAGCAGCAGGCAACAAATGAATTTCAGAACCAGTGAATCAAGTGATAAATATAACCCTGTTAATCATAAAGTTGATATTGAGATTTCCTCGAAGAACAGATTTGCAAGGGGAAATGGCACTCCCATTTCAGCAAGATATAAAAAGTCAGGCAATGAGGAAGCAAGCCCTAACATTTGGGCAGTCTGCACGGGTGGTGATCCTTAG

Protein sequence

>MsaT026147.1

MLCVDIGLVHFPKNHRGNVLHDFLQLSFEVEGGRVRQSEEVRNGLEFLKRKRLQRAQAIAATQTSAANVMNRSGGDALRGSPSCGTRLHGNPDVFFKRKVDKFDTSDLDWTDKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEQPGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFREYEKMANKVFARRYCSAGCLPATYLEKEFWQEIGRGKMDTVEYACDVDGSAFSTSPTDQLGNSKWNLKKLSRLPKSTLRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALEFERVVREHVYSTDILSSDGEDGAFDVLLGKTTLFPPNILMDHKVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFALGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLIHSSLELEDSDFPSSDLLSHHRTKIAFINLLRFQHCASWLLMKSRACISVSSHSHGTILCSLCKRDCYVAYVDCSCHMHPVCLRHAVKSLDLICGSKHTLYLREDITDMEAAAKMFEQEDGILDEISKQSKSDQNMYSYPLSDMFQRAEANGYEPYCELKLDSMIEFYTTPGLPTNNPECGTQNQFVLGNCSEIPKPEVSDVSFSAASTLCSLSEPHDCSSAPKNAEGNCEELGETISNSACESSLSPALYHESSAKLHDIQKPDIKPIVDNDSDDSDSGIFRVKRPSSLKAEKRNLKVMASKHSEQQGLKRLKKVLPEGKSSRQQMNFRTSESSDKYNPVNHKVDIEISSKNRFARGNGTPISARYKKSGNEEASPNIWAVCTGGDP*