Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026163 | AAV73838.1 | 99.203 | 502 | 0 | 1 | 1 | 498 | 1 | 502 | 0.0 | 1018 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026163 | sp|Q40152|HSF8_SOLLC | 57.831 | 498 | 152 | 15 | 29 | 489 | 40 | 516 | 2.67e-174 | 503 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026163 | tr|Q4L0F7|Q4L0F7_MEDSA | 99.203 | 502 | 0 | 1 | 1 | 498 | 1 | 502 | 0.0 | 1018 |
Gene ID | Type | Classification |
---|---|---|
MsaG026163 | TF | HSF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026163 | MtrunA17_Chr5g0410881 | 96.813 | 502 | 12 | 1 | 1 | 498 | 1 | 502 | 0.0 | 998 |
MsaG026163 | MtrunA17_Chr4g0039891 | 47.106 | 501 | 211 | 18 | 27 | 495 | 11 | 489 | 4.67e-126 | 376 |
MsaG026163 | MtrunA17_Chr7g0260331 | 58.333 | 228 | 91 | 1 | 8 | 235 | 29 | 252 | 1.93e-88 | 275 |
MsaG026163 | MtrunA17_Chr1g0204741 | 58.120 | 234 | 84 | 6 | 6 | 235 | 16 | 239 | 7.16e-83 | 259 |
MsaG026163 | MtrunA17_Chr3g0135831 | 57.333 | 225 | 80 | 5 | 15 | 236 | 33 | 244 | 4.89e-82 | 259 |
MsaG026163 | MtrunA17_Chr8g0392001 | 46.125 | 271 | 128 | 6 | 28 | 296 | 22 | 276 | 9.15e-67 | 219 |
MsaG026163 | MtrunA17_Chr1g0185131 | 49.561 | 228 | 95 | 3 | 15 | 240 | 19 | 228 | 3.86e-66 | 217 |
MsaG026163 | MtrunA17_Chr4g0071051 | 50.000 | 218 | 94 | 3 | 2 | 219 | 76 | 278 | 2.21e-65 | 217 |
MsaG026163 | MtrunA17_Chr8g0379701 | 53.763 | 186 | 75 | 2 | 27 | 210 | 11 | 187 | 6.77e-64 | 213 |
MsaG026163 | MtrunA17_Chr6g0467041 | 50.711 | 211 | 90 | 4 | 28 | 238 | 22 | 218 | 9.56e-64 | 210 |
MsaG026163 | MtrunA17_Chr8g0378061 | 50.952 | 210 | 89 | 4 | 29 | 238 | 23 | 218 | 1.28e-62 | 212 |
MsaG026163 | MtrunA17_Chr2g0330821 | 47.887 | 213 | 92 | 2 | 1 | 213 | 60 | 253 | 7.72e-61 | 203 |
MsaG026163 | MtrunA17_Chr6g0485571 | 46.009 | 213 | 101 | 5 | 24 | 236 | 7 | 205 | 6.50e-55 | 187 |
MsaG026163 | MtrunA17_Chr2g0284481 | 44.865 | 185 | 98 | 2 | 27 | 211 | 14 | 194 | 2.75e-51 | 179 |
MsaG026163 | MtrunA17_Chr3g0134031 | 43.147 | 197 | 64 | 2 | 25 | 173 | 21 | 217 | 1.58e-45 | 163 |
MsaG026163 | MtrunA17_Chr5g0397881 | 73.404 | 94 | 25 | 0 | 26 | 119 | 22 | 115 | 5.78e-45 | 161 |
MsaG026163 | MtrunA17_Chr5g0441531 | 46.073 | 191 | 91 | 2 | 25 | 203 | 22 | 212 | 1.02e-43 | 155 |
MsaG026163 | MtrunA17_Chr5g0402291 | 46.369 | 179 | 64 | 3 | 25 | 174 | 6 | 181 | 2.69e-42 | 152 |
MsaG026163 | MtrunA17_Chr7g0257331 | 49.342 | 152 | 75 | 1 | 25 | 174 | 19 | 170 | 3.25e-42 | 150 |
MsaG026163 | MtrunA17_Chr1g0203601 | 68.085 | 94 | 30 | 0 | 26 | 119 | 16 | 109 | 4.14e-42 | 152 |
MsaG026163 | MtrunA17_Chr6g0472421 | 67.021 | 94 | 31 | 0 | 26 | 119 | 31 | 124 | 2.66e-40 | 148 |
MsaG026163 | MtrunA17_Chr8g0375041 | 45.614 | 171 | 78 | 4 | 25 | 184 | 6 | 172 | 1.46e-38 | 141 |
MsaG026163 | MtrunA17_Chr1g0179311 | 43.931 | 173 | 83 | 4 | 88 | 260 | 14 | 172 | 7.90e-36 | 136 |
MsaG026163 | MtrunA17_Chr4g0047421 | 37.017 | 181 | 96 | 3 | 25 | 201 | 30 | 196 | 1.08e-32 | 124 |
MsaG026163 | MtrunA17_Chr1g0179321 | 66.216 | 74 | 25 | 0 | 14 | 87 | 35 | 108 | 5.66e-28 | 107 |
MsaG026163 | MtrunA17_Chr4g0023771 | 69.231 | 65 | 19 | 1 | 24 | 87 | 11 | 75 | 9.10e-26 | 101 |
MsaG026163 | MtrunA17_Chr2g0330841 | 36.364 | 165 | 86 | 3 | 72 | 236 | 31 | 176 | 3.12e-24 | 104 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026163 | AT1G32330.1 | 53.816 | 511 | 169 | 14 | 4 | 492 | 9 | 474 | 8.67e-166 | 478 |
MsaG026163 | AT1G32330.2 | 53.816 | 511 | 169 | 14 | 4 | 492 | 9 | 474 | 1.06e-165 | 478 |
MsaG026163 | AT4G17750.1 | 48.964 | 531 | 186 | 15 | 1 | 497 | 16 | 495 | 1.11e-144 | 424 |
MsaG026163 | AT5G16820.1 | 50.292 | 513 | 190 | 14 | 14 | 497 | 4 | 480 | 4.30e-137 | 404 |
MsaG026163 | AT5G16820.2 | 50.292 | 513 | 190 | 14 | 14 | 497 | 4 | 480 | 4.30e-137 | 404 |
MsaG026163 | AT3G02990.1 | 48.776 | 490 | 188 | 18 | 27 | 497 | 22 | 467 | 8.81e-126 | 375 |
MsaG026163 | AT3G22830.1 | 57.080 | 226 | 96 | 1 | 10 | 235 | 43 | 267 | 1.18e-83 | 265 |
MsaG026163 | AT2G26150.1 | 57.848 | 223 | 86 | 3 | 15 | 236 | 31 | 246 | 1.20e-82 | 260 |
MsaG026163 | AT2G26150.4 | 57.848 | 223 | 86 | 3 | 15 | 236 | 31 | 246 | 1.20e-82 | 260 |
MsaG026163 | AT3G51910.1 | 52.074 | 217 | 80 | 4 | 21 | 235 | 22 | 216 | 1.24e-68 | 221 |
MsaG026163 | AT5G03720.2 | 46.800 | 250 | 122 | 3 | 10 | 259 | 37 | 275 | 8.66e-68 | 223 |
MsaG026163 | AT5G03720.1 | 46.800 | 250 | 122 | 3 | 10 | 259 | 37 | 275 | 8.66e-68 | 223 |
MsaG026163 | AT1G67970.1 | 53.125 | 192 | 82 | 3 | 28 | 218 | 19 | 203 | 9.45e-63 | 209 |
MsaG026163 | AT4G13980.1 | 46.460 | 226 | 96 | 5 | 29 | 251 | 24 | 227 | 2.29e-62 | 211 |
MsaG026163 | AT3G63350.1 | 45.045 | 222 | 111 | 1 | 1 | 222 | 1 | 211 | 7.48e-61 | 201 |
MsaG026163 | AT5G43840.1 | 42.510 | 247 | 111 | 4 | 14 | 260 | 5 | 220 | 1.37e-59 | 198 |
MsaG026163 | AT4G18880.1 | 45.540 | 213 | 107 | 2 | 21 | 230 | 8 | 214 | 4.66e-55 | 189 |
MsaG026163 | AT5G45710.3 | 37.762 | 286 | 148 | 5 | 27 | 307 | 12 | 272 | 2.17e-53 | 184 |
MsaG026163 | AT5G45710.1 | 37.762 | 286 | 148 | 5 | 27 | 307 | 12 | 272 | 2.17e-53 | 184 |
MsaG026163 | AT3G24520.1 | 43.750 | 208 | 87 | 2 | 28 | 235 | 17 | 194 | 1.53e-52 | 181 |
MsaG026163 | AT5G54070.1 | 43.519 | 216 | 101 | 3 | 28 | 239 | 71 | 269 | 4.80e-52 | 179 |
MsaG026163 | AT1G46264.1 | 45.026 | 191 | 61 | 3 | 25 | 173 | 31 | 219 | 6.29e-45 | 161 |
MsaG026163 | AT2G41690.1 | 42.473 | 186 | 83 | 2 | 26 | 191 | 38 | 219 | 2.98e-42 | 151 |
MsaG026163 | AT2G26150.3 | 54.667 | 150 | 60 | 3 | 88 | 236 | 49 | 191 | 3.71e-42 | 152 |
MsaG026163 | AT2G26150.2 | 54.667 | 150 | 60 | 3 | 88 | 236 | 49 | 191 | 3.71e-42 | 152 |
MsaG026163 | AT4G11660.1 | 68.085 | 94 | 30 | 0 | 26 | 119 | 57 | 150 | 4.27e-41 | 152 |
MsaG026163 | AT4G36990.1 | 56.557 | 122 | 40 | 1 | 25 | 146 | 11 | 119 | 1.20e-40 | 148 |
MsaG026163 | AT5G62020.1 | 62.626 | 99 | 37 | 0 | 26 | 124 | 21 | 119 | 2.73e-40 | 147 |
MsaG026163 | AT4G18870.1 | 47.727 | 88 | 46 | 0 | 28 | 115 | 146 | 233 | 2.88e-25 | 105 |
MsaG026163 | AT4G18870.1 | 43.363 | 113 | 47 | 3 | 5 | 115 | 2 | 99 | 8.74e-23 | 99.0 |
MsaG026163 | AT1G77570.1 | 42.222 | 90 | 49 | 2 | 29 | 115 | 27 | 116 | 1.57e-17 | 80.1 |
MsaG026163 | AT4G19630.1 | 37.778 | 90 | 53 | 1 | 29 | 115 | 12 | 101 | 1.89e-13 | 67.8 |
Find 136 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTTGTTAAGCAATTCTATT+TGG | 0.145481 | 5:-17874104 | MsaT026163.1:CDS |
TCGGTGTCGGCGCCGGTATT+TGG | 0.178029 | 5:+17877729 | None:intergenic |
AAAATTTCAAACAGGGTTTC+AGG | 0.206273 | 5:-17875160 | MsaT026163.1:intron |
CCAACAACAGTTTCGTTGTT+TGG | 0.230125 | 5:-17877613 | MsaT026163.1:CDS |
TGTGTAGAAGTCGGCAAATT+TGG | 0.235613 | 5:-17874984 | MsaT026163.1:CDS |
TGAGGTACAGATAGAATTTC+AGG | 0.240310 | 5:+17874372 | None:intergenic |
CGAGACAGATGATGGATTTA+TGG | 0.242553 | 5:-17874193 | MsaT026163.1:CDS |
TCACCAATCAAGTAATTATC+AGG | 0.249130 | 5:+17874546 | None:intergenic |
TAAAAGGTCCCTAGCGAATT+CGG | 0.256098 | 5:+17877583 | None:intergenic |
CATAGATGATTAAATTCTTT+TGG | 0.258523 | 5:+17873924 | None:intergenic |
GCTTGAAGAACTTCGGTAAA+AGG | 0.260614 | 5:+17877567 | None:intergenic |
TGGATCATTACCCATTGATT+TGG | 0.296226 | 5:-17874157 | MsaT026163.1:CDS |
TTTGCTGTTTCATTCATCAT+AGG | 0.311359 | 5:+17874630 | None:intergenic |
CAACAACAGTTTCGTTGTTT+GGG | 0.319788 | 5:-17877612 | MsaT026163.1:CDS |
CGGTGTCGGCGCCGGTATTT+GGG | 0.322223 | 5:+17877730 | None:intergenic |
AACCCTGATAATTACTTGAT+TGG | 0.346275 | 5:-17874549 | MsaT026163.1:CDS |
GTCGTTGCTCCATTCCTTGA+AGG | 0.347154 | 5:+17874844 | None:intergenic |
GCCTCAAAATCCTCTGGAAT+TGG | 0.349084 | 5:+17874063 | None:intergenic |
GTGTAGAAGTCGGCAAATTT+GGG | 0.362865 | 5:-17874983 | MsaT026163.1:CDS |
TATACCTGAAGACAATTATA+TGG | 0.363191 | 5:-17874220 | MsaT026163.1:CDS |
ACCAGGGCTTTGGACGGCTT+TGG | 0.378818 | 5:+17874797 | None:intergenic |
TTTGCAAATTCCCAACGATC+TGG | 0.381736 | 5:+17875128 | None:intergenic |
AAAAGGTCCCTAGCGAATTC+GGG | 0.382966 | 5:+17877584 | None:intergenic |
TCTGGTACTGAAGGTATATC+AGG | 0.389774 | 5:+17874267 | None:intergenic |
TCTGCTCTGTTAGTTGATCC+AGG | 0.390931 | 5:+17873968 | None:intergenic |
CAAATTTGGGCTTGAGGAAG+AGG | 0.394429 | 5:-17874970 | MsaT026163.1:CDS |
ACTCAAATTCCAATGTCAAC+AGG | 0.397967 | 5:-17874426 | MsaT026163.1:CDS |
TTTGTTAAGCAATTCTATTT+GGG | 0.398896 | 5:-17874103 | MsaT026163.1:CDS |
GAGCAAAGAAACCAGGGCTT+TGG | 0.405473 | 5:+17874787 | None:intergenic |
TGCTAAGGAAGATCATGAAA+TGG | 0.411880 | 5:-17874602 | MsaT026163.1:CDS |
GAGGTGCAGCCAACAGAAAA+TGG | 0.412142 | 5:-17874012 | MsaT026163.1:CDS |
TATTTAACAATTTGTCCATC+AGG | 0.412857 | 5:+17874657 | None:intergenic |
GGAGCCATATAATTGTCTTC+AGG | 0.427662 | 5:+17874216 | None:intergenic |
AACAACAAAATGACAGCAAT+AGG | 0.448374 | 5:-17874755 | MsaT026163.1:CDS |
TGCAGCCAACAGAAAATGGC+TGG | 0.460415 | 5:-17874008 | MsaT026163.1:CDS |
TGAAAGACAATCCAAATCAA+TGG | 0.461549 | 5:+17874146 | None:intergenic |
GGCGCGTTCGCGTTTAGCAT+CGG | 0.464774 | 5:+17877710 | None:intergenic |
ACAATGGTTCAGCGCCTTCA+AGG | 0.468085 | 5:-17874858 | MsaT026163.1:CDS |
GAAGGTTGACCCAGATCGTT+GGG | 0.471844 | 5:-17875138 | MsaT026163.1:CDS |
CCATGGTCATACTCAACAAC+AGG | 0.472356 | 5:-17875045 | MsaT026163.1:CDS |
CGTTGGGAATTTGCAAATGA+GGG | 0.474986 | 5:-17875122 | MsaT026163.1:CDS |
ATGTTGGCCTCAAAATCCTC+TGG | 0.479139 | 5:+17874057 | None:intergenic |
GCTAAGGAAGATCATGAAAT+GGG | 0.481953 | 5:-17874601 | MsaT026163.1:CDS |
CAACAGATGCTATAGTTTCG+TGG | 0.484142 | 5:-17877643 | MsaT026163.1:CDS |
GAAAGACAATCCAAATCAAT+GGG | 0.486613 | 5:+17874147 | None:intergenic |
GCCAAAGCCGTCCAAAGCCC+TGG | 0.488993 | 5:-17874798 | MsaT026163.1:CDS |
GAAACTATAGCATCTGTTGA+AGG | 0.491464 | 5:+17877647 | None:intergenic |
ATAACATCTGCTTGAGAAGT+CGG | 0.493923 | 5:+17874294 | None:intergenic |
TGGCTGCACCTCATTCCCTC+TGG | 0.494605 | 5:+17874023 | None:intergenic |
CCAAACAACGAAACTGTTGT+TGG | 0.495551 | 5:+17877613 | None:intergenic |
TTTAGCATCGGTGTCGGCGC+CGG | 0.495901 | 5:+17877722 | None:intergenic |
CGAAATATCCAGAGGGAATG+AGG | 0.497477 | 5:-17874031 | MsaT026163.1:CDS |
TAACATCTGCTTGAGAAGTC+GGG | 0.501630 | 5:+17874295 | None:intergenic |
GGGACCCACCCGAATTCGCT+AGG | 0.503998 | 5:-17877592 | MsaT026163.1:CDS |
AGCTCTACAAGCTGGAACTC+GGG | 0.505067 | 5:-17874489 | MsaT026163.1:CDS |
CATAAATCCATCATCTGTCT+CGG | 0.507108 | 5:+17874194 | None:intergenic |
CAAATCATCAATGTCTGCAC+CGG | 0.507465 | 5:+17874122 | None:intergenic |
TCGTTGGGAATTTGCAAATG+AGG | 0.508434 | 5:-17875123 | MsaT026163.1:CDS |
CTGCTCTGTTAGTTGATCCA+GGG | 0.508669 | 5:+17873969 | None:intergenic |
CCTTGAGTCCCTGTTGACAT+TGG | 0.509700 | 5:+17874417 | None:intergenic |
TGAGTAGACTGCACTGAAGA+TGG | 0.510797 | 5:+17874444 | None:intergenic |
TTCGCGTTTAGCATCGGTGT+CGG | 0.511333 | 5:+17877716 | None:intergenic |
TTTATGGATCCGAGTTCACT+TGG | 0.511418 | 5:-17874177 | MsaT026163.1:CDS |
TCTGGATATTTCGTCAATGT+TGG | 0.511981 | 5:+17874041 | None:intergenic |
TTGCAAATTCCCAACGATCT+GGG | 0.513798 | 5:+17875129 | None:intergenic |
CAAGAATTCTTCGAAATGGA+TGG | 0.514936 | 5:-17877779 | None:intergenic |
GATGGAGCAAGCGGCGGAGA+GGG | 0.517366 | 5:-17877761 | MsaT026163.1:CDS |
GGCTTTGGACGGCTTTGGCA+AGG | 0.521460 | 5:+17874802 | None:intergenic |
GGTTCAGCGCCTTCAAGGAA+TGG | 0.521472 | 5:-17874853 | MsaT026163.1:CDS |
TTGTTATGCTTGAAGAACTT+CGG | 0.524138 | 5:+17877560 | None:intergenic |
GGATCAACTAACAGAGCAGA+TGG | 0.526736 | 5:-17873965 | MsaT026163.1:CDS |
ATGGCTCCCGAGACAGATGA+TGG | 0.528224 | 5:-17874201 | MsaT026163.1:CDS |
GGAAGGTTGACCCAGATCGT+TGG | 0.529784 | 5:-17875139 | MsaT026163.1:CDS |
TAGCTCTACAAGCTGGAACT+CGG | 0.530135 | 5:-17874490 | MsaT026163.1:CDS |
AACAATTTGTCCATCAGGAG+GGG | 0.543951 | 5:+17874662 | None:intergenic |
ATAAATCCATCATCTGTCTC+GGG | 0.544485 | 5:+17874195 | None:intergenic |
GGACAATAATACTCAGCCCC+TGG | 0.544550 | 5:-17873986 | MsaT026163.1:CDS |
TAACAATTTGTCCATCAGGA+GGG | 0.546075 | 5:+17874661 | None:intergenic |
GGGTTCAACCACCCAAATAC+CGG | 0.548137 | 5:-17877741 | MsaT026163.1:CDS |
GAGCAAGCTACCCCTCCTGA+TGG | 0.552465 | 5:-17874672 | MsaT026163.1:CDS |
GCTACTACTGTCCATTGCAC+TGG | 0.552846 | 5:+17874509 | None:intergenic |
GATAATTACTTGATTGGTGA+TGG | 0.554314 | 5:-17874543 | MsaT026163.1:CDS |
TGCTCTGTTAGTTGATCCAG+GGG | 0.555861 | 5:+17873970 | None:intergenic |
CTCAAATTCCAATGTCAACA+GGG | 0.556788 | 5:-17874425 | MsaT026163.1:CDS |
CTACTGTCCATTGCACTGGA+TGG | 0.557158 | 5:+17874513 | None:intergenic |
AGCATCTGCAAATGTTATGA+AGG | 0.557539 | 5:-17874343 | MsaT026163.1:CDS |
ATGGACAGAGTTCATCAGTA+GGG | 0.560915 | 5:-17875010 | MsaT026163.1:CDS |
TTTGCAGATGCTGCAGCTTG+AGG | 0.562895 | 5:+17874354 | None:intergenic |
AAACAGCAAAAGCAATGCTA+AGG | 0.565264 | 5:-17874617 | MsaT026163.1:CDS |
TGTTTGCAGCTGACCGTCAG+TGG | 0.569213 | 5:+17874878 | None:intergenic |
CCAATGTCAACAGGGACTCA+AGG | 0.569636 | 5:-17874417 | MsaT026163.1:CDS |
TTTCAAACAGGGTTTCAGGA+AGG | 0.570624 | 5:-17875156 | MsaT026163.1:intron |
GGTAATGATCCAAGTGAACT+CGG | 0.570835 | 5:+17874168 | None:intergenic |
GATTTGGATTGTCTTTCACC+CGG | 0.577390 | 5:-17874141 | MsaT026163.1:CDS |
GGCTTGAGGAAGAGGTTGAG+AGG | 0.577943 | 5:-17874962 | MsaT026163.1:CDS |
GGCACAATCTCTGGTACTGA+AGG | 0.579818 | 5:+17874258 | None:intergenic |
TTAACAATTTGTCCATCAGG+AGG | 0.580490 | 5:+17874660 | None:intergenic |
CACCAATCAAGTAATTATCA+GGG | 0.580602 | 5:+17874547 | None:intergenic |
TGTCGGCGCCGGTATTTGGG+TGG | 0.587096 | 5:+17877733 | None:intergenic |
AGGTCCCTAGCGAATTCGGG+TGG | 0.590111 | 5:+17877587 | None:intergenic |
TACTTCACCATCCAGTGCAA+TGG | 0.590271 | 5:-17874520 | MsaT026163.1:CDS |
CATGGACAGAGTTCATCAGT+AGG | 0.591063 | 5:-17875011 | MsaT026163.1:CDS |
ACAAACTGAGCAAAGAAACC+AGG | 0.596219 | 5:+17874780 | None:intergenic |
GGACCCACCCGAATTCGCTA+GGG | 0.598350 | 5:-17877591 | MsaT026163.1:CDS |
TGTTGAGTATGACCATGGGC+AGG | 0.599305 | 5:+17875050 | None:intergenic |
CAACAGGCTCAGCAACCGCA+TGG | 0.606577 | 5:-17875029 | MsaT026163.1:CDS |
AAAGAAACCAGGGCTTTGGA+CGG | 0.607667 | 5:+17874791 | None:intergenic |
AGTCGGCAAATTTGGGCTTG+AGG | 0.610170 | 5:-17874976 | MsaT026163.1:CDS |
TTCTCATGCAAGAGCTTGTG+AGG | 0.613430 | 5:-17874920 | MsaT026163.1:CDS |
ACAGTAGTAGCTCTACAAGC+TGG | 0.613534 | 5:-17874497 | MsaT026163.1:CDS |
TCTGCAAATGTTATGAAGGA+CGG | 0.618388 | 5:-17874339 | MsaT026163.1:CDS |
GTAGGGGCATGTGTAGAAGT+CGG | 0.619207 | 5:-17874993 | MsaT026163.1:CDS |
TTCGAAATGGATGGAGCAAG+CGG | 0.623140 | 5:-17877770 | None:intergenic |
AAGCGTCGGCTCAAGCAGGA+TGG | 0.626260 | 5:-17874711 | MsaT026163.1:CDS |
AAATCATCAATGTCTGCACC+GGG | 0.630153 | 5:+17874123 | None:intergenic |
TTTGAGCAAAACTTATGACA+TGG | 0.634177 | 5:-17877678 | MsaT026163.1:CDS |
GCAGCCAACAGAAAATGGCT+GGG | 0.636582 | 5:-17874007 | MsaT026163.1:CDS |
CAGCAGCAACAAACCACTGA+CGG | 0.637755 | 5:-17874891 | MsaT026163.1:CDS |
TCTGCAAACTCCAATTCCAG+AGG | 0.640517 | 5:-17874073 | MsaT026163.1:CDS |
GATCAACTAACAGAGCAGAT+GGG | 0.641177 | 5:-17873964 | MsaT026163.1:CDS |
CTCGGGAGTAACTCTTCAAG+AGG | 0.645660 | 5:-17874472 | MsaT026163.1:CDS |
TGACGGTCAGCTGCAAACAA+TGG | 0.646370 | 5:-17874874 | MsaT026163.1:CDS |
CCTGTTGTTGAGTATGACCA+TGG | 0.647258 | 5:+17875045 | None:intergenic |
GGATGGAGCAAGCGGCGGAG+AGG | 0.650098 | 5:-17877762 | MsaT026163.1:CDS |
ACATTGACGAAATATCCAGA+GGG | 0.654829 | 5:-17874038 | MsaT026163.1:CDS |
TGGACAGAGTTCATCAGTAG+GGG | 0.659673 | 5:-17875009 | MsaT026163.1:CDS |
AGTCGAAGAAAACCTGCCCA+TGG | 0.665848 | 5:-17875062 | MsaT026163.1:CDS |
CAAACTGAGCAAAGAAACCA+GGG | 0.668272 | 5:+17874781 | None:intergenic |
GGTCCCTAGCGAATTCGGGT+GGG | 0.673393 | 5:+17877588 | None:intergenic |
CTGTTGTTGAGTATGACCAT+GGG | 0.673452 | 5:+17875046 | None:intergenic |
AACATTGACGAAATATCCAG+AGG | 0.690077 | 5:-17874039 | MsaT026163.1:CDS |
GAAATGGATGGAGCAAGCGG+CGG | 0.691235 | 5:-17877767 | MsaT026163.1:CDS |
GAGCAAAACTTATGACATGG+TGG | 0.697463 | 5:-17877675 | MsaT026163.1:CDS |
GTAGACTGCACTGAAGATGG+AGG | 0.697646 | 5:+17874447 | None:intergenic |
ACTGATGAACTCTGTCCATG+CGG | 0.724135 | 5:+17875014 | None:intergenic |
TTATTGAAAGATTCTACACG+CGG | 0.735179 | 5:+17874573 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 17873933 | 17877786 | 17873933 | ID=MsaG026163 |
Chr5 | mRNA | 17873933 | 17877786 | 17873933 | ID=MsaT026163.1;Parent=MsaG026163 |
Chr5 | exon | 17873933 | 17875168 | 17873933 | ID=MsaT026163.1.exon2;Parent=MsaT026163.1 |
Chr5 | CDS | 17873933 | 17875168 | 17873933 | ID=cds.MsaT026163.1;Parent=MsaT026163.1 |
Chr5 | exon | 17877526 | 17877786 | 17877526 | ID=MsaT026163.1.exon1;Parent=MsaT026163.1 |
Chr5 | CDS | 17877526 | 17877786 | 17877526 | ID=cds.MsaT026163.1;Parent=MsaT026163.1 |
Gene Sequence |
Protein sequence |