AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG026232

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG026232 MtrunA17_Chr5g0411691 91.213 239 7 1 1 225 1 239 2.82e-159 440
MsaG026232 MtrunA17_Chr2g0279821 60.435 230 79 3 1 219 1 229 3.06e-91 268
MsaG026232 MtrunA17_Chr4g0049541 55.357 224 83 3 1 211 1 220 5.55e-75 226
MsaG026232 MtrunA17_Chr5g0427961 57.317 164 63 4 60 221 4 162 1.30e-55 175
MsaG026232 MtrunA17_Chr2g0284911 44.103 195 106 2 1 193 16 209 3.03e-49 161
MsaG026232 MtrunA17_Chr8g0380021 40.359 223 120 3 1 215 17 234 4.35e-48 158
MsaG026232 MtrunA17_Chr3g0077501 45.614 171 91 1 1 169 1 171 3.42e-45 150
MsaG026232 MtrunA17_Chr3g0097101 45.087 173 89 2 1 169 16 186 5.99e-43 145
MsaG026232 MtrunA17_Chr4g0061691 43.636 165 90 2 1 162 1 165 4.83e-42 142
MsaG026232 MtrunA17_Chr8g0351051 43.353 173 96 1 1 171 1 173 2.46e-41 141
MsaG026232 MtrunA17_Chr5g0412271 44.693 179 93 5 1 175 1 177 5.56e-40 137
MsaG026232 MtrunA17_Chr5g0412461 46.067 178 90 5 1 174 1 176 7.01e-40 136
MsaG026232 MtrunA17_Chr1g0204111 41.361 191 104 3 1 186 17 204 1.58e-39 136
MsaG026232 MtrunA17_Chr8g0366231 42.424 165 92 2 1 162 1 165 5.47e-39 134
MsaG026232 MtrunA17_Chr6g0455511 37.273 220 121 5 1 210 1 213 1.82e-38 134
MsaG026232 MtrunA17_Chr5g0420081 41.040 173 97 3 1 169 1 172 3.11e-38 132
MsaG026232 MtrunA17_Chr7g0220111 38.208 212 129 2 1 210 1 212 3.30e-38 133
MsaG026232 MtrunA17_Chr3g0122251 37.615 218 126 4 1 210 1 216 3.95e-38 132
MsaG026232 MtrunA17_Chr7g0220121 41.420 169 96 3 1 167 1 168 7.90e-38 132
MsaG026232 MtrunA17_Chr8g0351041 43.827 162 88 2 1 159 1 162 9.00e-38 129
MsaG026232 MtrunA17_Chr8g0351031 40.000 190 111 2 1 187 1 190 9.91e-38 131
MsaG026232 MtrunA17_Chr4g0020221 46.104 154 79 1 1 150 1 154 1.05e-37 132
MsaG026232 MtrunA17_Chr5g0420091 41.279 172 98 2 1 169 1 172 1.60e-37 130
MsaG026232 MtrunA17_Chr5g0427401 43.787 169 95 0 1 169 1 169 2.76e-37 130
MsaG026232 MtrunA17_Chr7g0246431 42.442 172 91 2 1 167 1 169 2.34e-36 127
MsaG026232 MtrunA17_Chr4g0057151 41.899 179 101 3 1 177 1 178 1.06e-35 125
MsaG026232 MtrunA17_Chr6g0474371 42.529 174 96 3 1 170 1 174 1.47e-35 124
MsaG026232 MtrunA17_Chr1g0164791 37.755 196 111 4 1 187 1 194 1.49e-35 125
MsaG026232 MtrunA17_Chr4g0061671 38.012 171 103 3 1 169 1 170 2.39e-35 124
MsaG026232 MtrunA17_Chr4g0049901 44.379 169 90 1 1 165 27 195 1.21e-34 123
MsaG026232 MtrunA17_Chr4g0018421 41.146 192 102 4 1 188 1 185 1.58e-33 119
MsaG026232 MtrunA17_Chr3g0142191 32.231 242 124 7 1 224 1 220 6.21e-32 116
MsaG026232 MtrunA17_Chr3g0125241 39.181 171 87 4 1 165 26 185 8.43e-31 112
MsaG026232 MtrunA17_Chr1g0159661 38.690 168 80 4 1 152 1 161 2.66e-27 102
MsaG026232 MtrunA17_Chr5g0427921 81.667 60 11 0 1 60 1 60 4.20e-27 98.6
MsaG026232 MtrunA17_Chr1g0173161 64.516 62 22 0 1 62 1 62 4.02e-24 91.7
MsaG026232 MtrunA17_Chr5g0404951 37.179 156 77 5 1 144 1 147 2.20e-23 94.0
MsaG026232 MtrunA17_Chr2g0308251 53.623 69 32 0 1 69 1 69 7.36e-22 85.9
MsaG026232 MtrunA17_Chr7g0246381 60.656 61 24 0 1 61 1 61 1.21e-21 85.1
MsaG026232 MtrunA17_Chr8g0377561 62.069 58 22 0 1 58 1 58 1.52e-20 82.8
MsaG026232 MtrunA17_Chr3g0134451 50.633 79 38 1 1 78 1 79 6.88e-20 86.3
MsaG026232 MtrunA17_Chr1g0166611 45.055 91 43 1 13 103 17 100 3.37e-18 77.8
MsaG026232 MtrunA17_Chr8g0357771 50.725 69 34 0 1 69 1 69 1.87e-17 77.0
MsaG026232 MtrunA17_Chr1g0208561 48.529 68 35 0 2 69 9 76 2.27e-17 77.8
MsaG026232 MtrunA17_Chr3g0089141 48.529 68 35 0 2 69 9 76 2.54e-17 77.8
MsaG026232 MtrunA17_Chr2g0325971 48.529 68 35 0 2 69 9 76 2.68e-17 77.8
MsaG026232 MtrunA17_Chr1g0169761 40.496 121 62 4 1 112 1 120 8.53e-17 75.1
MsaG026232 MtrunA17_Chr5g0425191 58.621 58 24 0 1 58 1 58 9.22e-17 73.2
MsaG026232 MtrunA17_Chr4g0052061 49.275 69 35 0 1 69 1 69 9.92e-17 74.7
MsaG026232 MtrunA17_Chr3g0099421 50.000 68 34 0 2 69 34 101 1.86e-16 75.9
MsaG026232 MtrunA17_Chr4g0044071 55.172 58 26 0 1 58 1 58 2.03e-16 72.4
MsaG026232 MtrunA17_Chr1g0208581 47.059 68 36 0 2 69 9 76 3.09e-16 74.7
MsaG026232 MtrunA17_Chr2g0292791 50.000 68 34 0 2 69 9 76 3.48e-16 74.7
MsaG026232 MtrunA17_Chr1g0175601 36.937 111 68 1 1 109 1 111 3.75e-16 73.6
MsaG026232 MtrunA17_Chr1g0206721 28.511 235 118 7 2 211 9 218 5.23e-16 74.3
MsaG026232 MtrunA17_Chr5g0419601 47.826 69 36 0 1 69 8 76 7.03e-16 73.9
MsaG026232 MtrunA17_Chr3g0099411 48.529 68 35 0 2 69 9 76 7.23e-16 73.6
MsaG026232 MtrunA17_Chr8g0376821 47.826 69 36 0 1 69 1 69 9.31e-16 72.4
MsaG026232 MtrunA17_Chr1g0175611 47.826 69 36 0 1 69 1 69 1.32e-15 72.0
MsaG026232 MtrunA17_Chr1g0206701 48.529 68 35 0 2 69 9 76 1.39e-15 73.2
MsaG026232 MtrunA17_Chr5g0422421 48.529 68 35 0 2 69 9 76 1.43e-15 73.2
MsaG026232 MtrunA17_Chr8g0355091 48.529 68 35 0 2 69 9 76 1.58e-15 73.2
MsaG026232 MtrunA17_Chr1g0187361 45.588 68 37 0 2 69 9 76 2.47e-15 72.4
MsaG026232 MtrunA17_Chr1g0206991 48.529 68 35 0 2 69 9 76 2.66e-15 71.2
MsaG026232 MtrunA17_Chr2g0317451 47.059 68 36 0 2 69 9 76 2.68e-15 72.4
MsaG026232 MtrunA17_Chr4g0052081 35.000 120 60 3 1 118 1 104 2.76e-15 71.2
MsaG026232 MtrunA17_Chr2g0317481 47.059 68 36 0 2 69 9 76 2.91e-15 72.4
MsaG026232 MtrunA17_Chr1g0188671 44.118 68 38 0 2 69 47 114 3.31e-15 72.8
MsaG026232 MtrunA17_Chr1g0180591 46.377 69 37 0 1 69 1 69 4.04e-15 70.9
MsaG026232 MtrunA17_Chr3g0119901 44.928 69 38 0 1 69 8 76 5.75e-15 70.9
MsaG026232 MtrunA17_Chr8g0356071 46.377 69 37 0 1 69 1 69 6.21e-15 69.7
MsaG026232 MtrunA17_Chr1g0149391 47.059 68 36 0 2 69 9 76 1.12e-14 70.9
MsaG026232 MtrunA17_Chr3g0085241 43.478 69 39 0 1 69 40 108 1.54e-14 70.5
MsaG026232 MtrunA17_Chr5g0422941 45.588 68 37 0 2 69 9 76 1.92e-14 70.1
MsaG026232 MtrunA17_Chr8g0379021 42.647 68 39 0 2 69 12 79 2.12e-14 68.9
MsaG026232 MtrunA17_Chr4g0074101 44.928 69 38 0 1 69 1 69 2.23e-14 68.9
MsaG026232 MtrunA17_Chr4g0060841 43.662 71 38 1 1 69 1 71 3.76e-14 70.5
MsaG026232 MtrunA17_Chr4g0018951 49.091 55 28 0 15 69 25 79 5.02e-14 67.4
MsaG026232 MtrunA17_Chr2g0333981 42.029 69 40 0 1 69 11 79 7.65e-14 67.4
MsaG026232 MtrunA17_Chr2g0300441 44.286 70 37 1 2 69 7 76 1.73e-13 67.4
MsaG026232 MtrunA17_Chr2g0308271 33.898 118 75 2 54 169 27 143 6.58e-13 65.5
MsaG026232 MtrunA17_Chr3g0089151 41.176 68 40 0 2 69 9 76 1.16e-12 63.2
MsaG026232 MtrunA17_Chr2g0300421 44.118 68 38 0 2 69 9 76 1.34e-12 63.9
MsaG026232 MtrunA17_Chr5g0417661 50.943 53 26 0 1 53 56 108 3.88e-12 61.6
MsaG026232 MtrunA17_Chr3g0111841 45.000 60 33 0 7 66 1 60 8.13e-12 58.9
MsaG026232 MtrunA17_Chr1g0206691 45.763 59 32 0 11 69 1 59 8.39e-12 62.4
MsaG026232 MtrunA17_Chr4g0071601 43.478 69 39 0 1 69 11 79 5.09e-11 59.7
MsaG026232 MtrunA17_Chr1g0187351 42.373 59 34 0 11 69 1 59 5.72e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG026232 AT4G37940.1 59.825 229 83 3 1 222 1 227 7.95e-90 264
MsaG026232 AT2G22630.1 58.051 236 75 4 1 221 1 227 2.93e-88 260
MsaG026232 AT2G22630.2 58.051 236 75 4 1 221 1 227 2.93e-88 260
MsaG026232 AT4G37940.4 60.090 223 78 3 1 222 1 213 1.97e-87 258
MsaG026232 AT3G57230.1 67.647 170 54 1 1 169 1 170 5.67e-83 247
MsaG026232 AT3G57230.4 67.647 170 54 1 1 169 1 170 5.67e-83 247
MsaG026232 AT4G37940.3 75.177 141 34 1 1 140 1 141 5.79e-73 219
MsaG026232 AT2G14210.1 56.637 226 76 6 1 210 1 220 1.63e-69 213
MsaG026232 AT2G14210.2 56.637 226 76 6 1 210 1 220 2.97e-69 212
MsaG026232 AT3G57230.2 68.276 145 45 1 1 144 1 145 1.20e-68 207
MsaG026232 AT4G18960.1 39.149 235 116 4 2 219 18 242 2.08e-48 159
MsaG026232 AT4G09960.1 46.199 171 90 1 1 169 1 171 7.39e-48 157
MsaG026232 AT4G09960.6 46.199 171 90 1 1 169 2 172 8.66e-48 157
MsaG026232 AT4G09960.5 46.199 171 90 1 1 169 11 181 9.61e-48 157
MsaG026232 AT4G09960.3 46.199 171 90 1 1 169 27 197 2.26e-47 157
MsaG026232 AT4G37940.2 50.595 168 74 3 62 222 1 166 3.39e-47 154
MsaG026232 AT2G42830.1 39.640 222 120 5 1 212 16 233 2.60e-46 154
MsaG026232 AT2G42830.2 40.090 222 121 4 1 212 16 235 7.67e-46 153
MsaG026232 AT4G09960.2 49.664 149 73 1 1 147 1 149 8.60e-46 152
MsaG026232 AT3G57230.5 59.091 132 47 3 43 169 7 136 3.64e-45 150
MsaG026232 AT3G57230.3 59.091 132 47 3 43 169 7 136 3.64e-45 150
MsaG026232 AT3G58780.1 45.087 173 89 2 1 169 16 186 5.89e-45 150
MsaG026232 AT3G58780.5 45.087 173 89 2 1 169 22 192 6.43e-45 150
MsaG026232 AT4G09960.4 47.904 167 82 3 1 165 96 259 1.61e-44 152
MsaG026232 AT2G45650.1 45.806 155 83 1 1 154 1 155 1.97e-42 144
MsaG026232 AT3G61120.1 46.104 154 83 0 1 154 1 154 2.35e-42 144
MsaG026232 AT5G13790.1 46.154 169 86 1 1 169 1 164 4.70e-42 144
MsaG026232 AT5G13790.2 45.614 171 87 2 1 169 1 167 7.55e-42 143
MsaG026232 AT3G58780.4 50.000 146 67 2 1 142 16 159 1.71e-41 142
MsaG026232 AT1G69120.2 42.442 172 96 3 1 169 1 172 3.11e-41 140
MsaG026232 AT1G26310.1 41.954 174 96 3 1 169 1 174 3.61e-41 141
MsaG026232 AT1G69120.1 42.442 172 96 3 1 169 1 172 7.52e-41 140
MsaG026232 AT2G45660.1 42.135 178 100 2 1 176 1 177 9.24e-41 139
MsaG026232 AT5G62165.3 41.765 170 97 1 1 168 1 170 3.25e-40 137
MsaG026232 AT5G62165.1 41.765 170 97 1 1 168 1 170 3.25e-40 137
MsaG026232 AT5G62165.2 41.765 170 97 1 1 168 1 170 3.25e-40 137
MsaG026232 AT3G58780.2 42.775 173 86 3 1 169 16 179 3.47e-40 138
MsaG026232 AT2G45660.2 44.872 156 84 1 1 154 1 156 9.94e-40 134
MsaG026232 AT5G60910.1 40.698 172 99 2 1 169 1 172 1.73e-39 136
MsaG026232 AT2G22540.3 47.929 169 82 5 1 165 1 167 3.20e-39 135
MsaG026232 AT2G22540.1 47.929 169 82 5 1 165 1 167 3.20e-39 135
MsaG026232 AT3G58780.3 39.394 198 89 3 1 169 16 211 4.41e-39 136
MsaG026232 AT5G51860.2 43.023 172 95 2 1 169 1 172 5.32e-39 134
MsaG026232 AT5G62165.10 44.720 161 86 2 1 159 1 160 1.69e-38 132
MsaG026232 AT5G62165.4 44.720 161 86 2 1 159 1 160 1.69e-38 132
MsaG026232 AT5G51860.1 42.857 168 93 2 1 165 1 168 1.72e-38 133
MsaG026232 AT5G62165.17 42.308 156 88 1 1 154 1 156 3.46e-38 130
MsaG026232 AT5G62165.12 42.308 156 88 1 1 154 1 156 3.46e-38 130
MsaG026232 AT5G62165.11 42.308 156 88 1 1 154 1 156 3.46e-38 130
MsaG026232 AT5G62165.6 45.205 146 78 1 1 144 1 146 3.22e-37 127
MsaG026232 AT5G62165.9 45.205 146 78 1 1 144 1 146 3.22e-37 127
MsaG026232 AT5G62165.7 45.205 146 78 1 1 144 1 146 3.22e-37 127
MsaG026232 AT5G62165.8 45.205 146 78 1 1 144 1 146 3.22e-37 127
MsaG026232 AT5G62165.13 45.205 146 78 1 1 144 1 146 3.22e-37 127
MsaG026232 AT4G22950.2 44.444 171 92 2 1 169 1 170 1.27e-36 127
MsaG026232 AT4G22950.3 43.931 173 94 2 1 171 1 172 3.84e-36 127
MsaG026232 AT4G22950.1 43.931 173 94 2 1 171 1 172 3.84e-36 127
MsaG026232 AT5G51870.1 42.038 157 88 2 1 154 1 157 1.61e-35 125
MsaG026232 AT5G51870.4 42.038 157 88 2 1 154 1 157 3.22e-35 124
MsaG026232 AT5G51870.3 42.038 157 88 2 1 154 11 167 5.05e-35 124
MsaG026232 AT2G22540.2 46.746 169 79 6 1 165 1 162 5.28e-35 124
MsaG026232 AT3G02310.1 42.442 172 96 2 1 169 1 172 6.66e-35 124
MsaG026232 AT3G02310.2 42.690 171 95 2 1 168 1 171 7.04e-35 123
MsaG026232 AT1G24260.1 40.230 174 91 3 1 165 1 170 7.34e-35 124
MsaG026232 AT3G30260.1 43.421 152 81 3 1 148 1 151 1.33e-34 124
MsaG026232 AT5G23260.2 36.321 212 124 4 1 210 1 203 1.87e-34 124
MsaG026232 AT1G24260.2 40.351 171 96 2 1 165 1 171 1.94e-34 123
MsaG026232 AT4G11880.2 45.860 157 81 3 1 154 1 156 2.24e-34 121
MsaG026232 AT4G11880.3 45.860 157 81 3 1 154 1 156 2.24e-34 121
MsaG026232 AT5G23260.4 36.321 212 124 4 1 210 17 219 2.56e-34 124
MsaG026232 AT5G15800.1 41.279 172 98 2 1 169 1 172 4.06e-34 122
MsaG026232 AT5G15800.2 41.279 172 98 2 1 169 1 172 4.94e-34 122
MsaG026232 AT1G24260.3 41.875 160 87 2 1 154 1 160 6.29e-34 122
MsaG026232 AT5G51870.2 43.537 147 80 2 1 144 1 147 8.49e-34 119
MsaG026232 AT2G03710.3 37.356 174 102 3 1 169 1 172 9.92e-34 120
MsaG026232 AT2G03710.2 36.757 185 107 4 1 180 1 180 9.97e-34 122
MsaG026232 AT4G24540.1 39.181 171 102 1 1 169 1 171 1.06e-33 120
MsaG026232 AT2G03710.1 36.757 185 107 4 1 180 1 180 1.08e-33 122
MsaG026232 AT3G57390.3 42.771 166 70 2 1 149 1 158 1.31e-33 120
MsaG026232 AT3G57390.1 42.771 166 70 2 1 149 1 158 2.43e-33 120
MsaG026232 AT5G51870.5 43.537 147 80 2 1 144 24 170 2.70e-33 119
MsaG026232 AT4G11880.4 46.939 147 74 3 1 144 1 146 1.72e-32 117
MsaG026232 AT4G11880.1 46.939 147 74 3 1 144 1 146 1.72e-32 117
MsaG026232 AT5G23260.1 36.321 212 119 5 1 210 17 214 6.04e-32 117
MsaG026232 AT3G54340.1 38.021 192 92 4 1 175 1 182 8.84e-32 116
MsaG026232 AT5G23260.3 41.290 155 88 2 1 153 1 154 5.45e-30 111
MsaG026232 AT5G62165.14 54.118 85 39 0 1 85 1 85 2.32e-28 103
MsaG026232 AT5G65060.1 31.604 212 123 5 1 206 1 196 2.73e-28 106
MsaG026232 AT5G20240.2 41.096 146 67 3 1 137 1 136 1.99e-27 102
MsaG026232 AT5G65060.3 35.057 174 104 3 1 172 1 167 6.60e-27 102
MsaG026232 AT5G65050.2 35.057 174 104 3 1 172 1 167 6.69e-27 102
MsaG026232 AT5G20240.1 40.523 153 72 3 1 144 1 143 1.04e-26 102
MsaG026232 AT5G65060.2 33.649 211 109 7 1 206 1 185 1.09e-26 101
MsaG026232 AT5G65050.3 34.066 182 107 4 1 176 1 175 4.36e-26 100
MsaG026232 AT1G71692.1 36.264 182 100 3 1 169 1 179 1.91e-25 99.4
MsaG026232 AT5G65050.5 33.862 189 103 4 1 184 1 172 4.64e-25 97.4
MsaG026232 AT5G65080.3 33.971 209 110 7 1 206 8 191 5.15e-25 97.4
MsaG026232 AT5G10140.4 35.669 157 90 3 1 154 1 149 1.46e-24 96.3
MsaG026232 AT5G65070.1 30.288 208 135 4 1 206 1 200 5.12e-24 95.1
MsaG026232 AT5G10140.1 36.735 147 82 3 1 144 1 139 9.08e-24 94.4
MsaG026232 AT5G10140.2 36.735 147 82 3 1 144 1 139 9.16e-24 93.6
MsaG026232 AT5G10140.3 36.735 147 82 3 1 144 1 139 1.98e-23 93.2
MsaG026232 AT5G65050.1 35.484 155 91 3 1 153 1 148 3.82e-23 92.4
MsaG026232 AT1G77080.4 33.649 211 112 6 1 202 1 192 7.74e-23 92.0
MsaG026232 AT1G77080.11 35.754 179 106 3 1 177 1 172 4.46e-22 89.4
MsaG026232 AT5G65070.2 29.237 236 132 7 1 206 1 231 1.47e-21 89.4
MsaG026232 AT1G77080.5 36.585 164 95 3 1 162 1 157 1.78e-21 87.8
MsaG026232 AT1G31140.2 38.411 151 84 3 1 144 1 149 3.30e-21 88.2
MsaG026232 AT1G31140.1 38.255 149 85 3 1 144 1 147 4.86e-21 87.8
MsaG026232 AT5G65070.4 37.324 142 80 3 1 140 1 135 5.85e-21 85.9
MsaG026232 AT1G77080.8 31.466 232 116 7 1 202 1 219 2.64e-20 85.9
MsaG026232 AT5G65070.5 48.750 80 40 1 1 79 1 80 9.15e-20 84.3
MsaG026232 AT2G34440.1 52.174 69 33 0 1 69 1 69 9.08e-19 80.9
MsaG026232 AT1G77980.1 51.852 81 37 2 1 80 1 80 3.73e-18 82.0
MsaG026232 AT1G77080.2 33.663 202 120 5 1 202 1 188 4.05e-18 79.3
MsaG026232 AT5G65070.3 25.833 240 136 4 1 206 1 232 4.12e-18 80.5
MsaG026232 AT1G22130.1 48.148 81 40 2 1 79 1 81 5.70e-18 81.6
MsaG026232 AT5G65080.2 29.204 226 111 6 1 206 8 204 4.20e-17 77.0
MsaG026232 AT3G66656.1 47.826 69 36 0 1 69 1 69 2.56e-16 74.3
MsaG026232 AT2G24840.1 47.826 69 36 0 1 69 62 130 4.49e-16 75.5
MsaG026232 AT1G77950.3 46.914 81 41 2 1 80 1 80 7.16e-16 74.7
MsaG026232 AT1G77950.2 46.914 81 41 2 1 80 1 80 7.16e-16 74.7
MsaG026232 AT1G77950.1 46.914 81 41 2 1 80 1 80 7.16e-16 74.7
MsaG026232 AT1G77950.4 46.914 81 41 2 1 80 1 80 7.16e-16 74.7
MsaG026232 AT1G77080.12 35.714 154 90 2 1 154 1 145 2.65e-15 70.9
MsaG026232 AT1G72350.1 51.471 68 31 1 2 69 43 108 4.39e-15 72.0
MsaG026232 AT3G04100.1 30.714 140 77 4 2 141 14 133 4.57e-15 71.6
MsaG026232 AT4G18960.3 28.415 183 104 4 54 219 56 228 1.56e-14 70.9
MsaG026232 AT4G18960.2 28.415 183 104 4 54 219 56 228 1.56e-14 70.9
MsaG026232 AT5G60440.1 47.059 68 36 0 2 69 7 74 3.07e-14 70.9
MsaG026232 AT4G18960.4 34.746 118 75 1 54 169 56 173 5.71e-14 68.2
MsaG026232 AT1G01530.1 41.791 67 39 0 1 67 6 72 7.31e-14 68.9
MsaG026232 AT1G18750.4 42.254 71 39 1 1 69 1 71 8.87e-14 70.1
MsaG026232 AT1G65360.1 35.000 80 52 0 1 80 6 85 9.73e-14 68.2
MsaG026232 AT1G18750.1 42.254 71 39 1 1 69 1 71 1.01e-13 69.7
MsaG026232 AT1G18750.3 42.254 71 39 1 1 69 1 71 1.31e-13 69.7
MsaG026232 AT2G03060.3 46.479 71 36 1 1 69 1 71 1.56e-13 69.3
MsaG026232 AT2G03060.7 46.479 71 36 1 1 69 1 71 1.56e-13 69.3
MsaG026232 AT2G03060.1 46.479 71 36 1 1 69 1 71 1.56e-13 69.3
MsaG026232 AT4G36590.1 44.118 68 38 0 2 69 7 74 1.65e-13 68.2
MsaG026232 AT2G03060.2 46.479 71 36 1 1 69 1 71 2.02e-13 68.9
MsaG026232 AT4G37435.1 44.286 70 38 1 1 69 1 70 5.79e-13 65.5
MsaG026232 AT1G47760.1 34.259 108 60 2 1 108 1 97 7.14e-13 65.1
MsaG026232 AT2G26320.1 40.845 71 40 1 1 69 17 87 1.73e-12 62.4
MsaG026232 AT1G69540.1 54.717 53 24 0 1 53 1 53 1.80e-12 65.9
MsaG026232 AT1G69540.2 54.717 53 24 0 1 53 1 53 2.67e-12 65.5
MsaG026232 AT1G69120.3 32.727 110 72 2 62 169 1 110 3.38e-11 60.8
MsaG026232 AT1G29962.1 41.176 68 40 0 2 69 8 75 5.38e-11 60.1
MsaG026232 AT1G28460.1 41.176 68 40 0 2 69 8 75 8.56e-11 59.3
MsaG026232 AT1G46408.1 29.851 134 76 4 1 128 1 122 8.64e-11 60.5

Find 45 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGGGAGAACAGCTTTA+TGG 0.252080 5:-18878354 MsaT026232.1:CDS
GTTGACTCTCTAGGTCTTGT+AGG 0.264680 5:+18878316 None:intergenic
CATACCTTGACTTCAGATTC+TGG 0.269362 5:+18879231 None:intergenic
TTACCTTTCGGTTCAGCTCT+TGG 0.342679 5:+18878150 None:intergenic
ATTCTGGATTTGTCCCTTGT+TGG 0.350055 5:+18879247 None:intergenic
CCAAGGAGTTCGCATGAAAA+AGG 0.352891 5:-18878280 MsaT026232.1:intron
TTCATAAAGCTTTCCAGTGC+TGG 0.356821 5:+18883901 None:intergenic
CAATTTCCATACGGTGTTCA+TGG 0.363241 5:-18877654 MsaT026232.1:CDS
TTGAGTTCATAGGCAATTGA+TGG 0.413482 5:-18878370 MsaT026232.1:intron
CACAATATTCTTGCTCAGGC+TGG 0.421967 5:+18877589 None:intergenic
TGAAGTTGAAATAATGTTTG+TGG 0.440444 5:+18877618 None:intergenic
GTCTCACAATATTCTTGCTC+AGG 0.460316 5:+18877585 None:intergenic
TGAAAATTAAGAATGGGAAG+AGG 0.475171 5:-18884058 None:intergenic
ATTGAAATGTCGTAGGTGTA+TGG 0.485215 5:-18877723 MsaT026232.1:intron
CTTGTTATATTCTCCAGCAC+TGG 0.491988 5:-18883914 MsaT026232.1:CDS
ACTTTCTCAAAGAGGAGAAA+GGG 0.497305 5:-18883989 MsaT026232.1:CDS
GAAAATTAAGAATGGGAAGA+GGG 0.497354 5:-18884057 None:intergenic
CACTTTCTCAAAGAGGAGAA+AGG 0.498818 5:-18883990 MsaT026232.1:CDS
ACAGGGAAACATAATCCATC+AGG 0.520605 5:-18878043 MsaT026232.1:intron
CATAATCCATCAGGAAAATG+TGG 0.527713 5:-18878034 MsaT026232.1:CDS
ACAAGACCTAGAGAGTCAAC+TGG 0.528351 5:-18878313 MsaT026232.1:CDS
CCATACGGTGTTCATGGAGG+AGG 0.529836 5:-18877648 MsaT026232.1:CDS
ATCCTATGTGATGCACAAGT+TGG 0.534377 5:-18883938 MsaT026232.1:CDS
CCTCCTCCATGAACACCGTA+TGG 0.536688 5:+18877648 None:intergenic
TAAGTTCCAGTTGACTCTCT+AGG 0.537150 5:+18878307 None:intergenic
TGAGTTCATAGGCAATTGAT+GGG 0.544313 5:-18878369 MsaT026232.1:intron
CAAGAATATTGTGAGACCTC+AGG 0.548980 5:-18877579 MsaT026232.1:CDS
AAATGTGGAGCTCTATAAGA+AGG 0.555562 5:-18878019 MsaT026232.1:intron
GCATTTGTTCAATTTCCATA+CGG 0.559750 5:-18877663 MsaT026232.1:CDS
TTTATGAATATGCAAATACC+AGG 0.561818 5:-18883886 MsaT026232.1:intron
TGTTGCACTTGCACTGCCTG+AGG 0.561931 5:+18877563 None:intergenic
GAGGGAAGATTGTGATTCGA+AGG 0.568621 5:-18884039 MsaT026232.1:CDS
AAATCCAGAATCTGAAGTCA+AGG 0.573093 5:-18879235 MsaT026232.1:intron
AAAGTCTACAAGAAAACCAT+AGG 0.574987 5:-18878472 MsaT026232.1:intron
CAACTGGAACTTAGCCTCCA+AGG 0.576707 5:-18878297 MsaT026232.1:CDS
GGCAAGTCACTTTCTCAAAG+AGG 0.589125 5:-18883997 MsaT026232.1:CDS
TGAGAGATATAACATTTGCA+AGG 0.603510 5:-18879274 MsaT026232.1:CDS
GGATCGACAACTGTACAAGC+AGG 0.608335 5:-18884018 MsaT026232.1:CDS
ATTTGCAAGGAGGACCAACA+AGG 0.639607 5:-18879261 MsaT026232.1:CDS
AATCCAAGAGCTGAACCGAA+AGG 0.649030 5:-18878153 MsaT026232.1:intron
GTCCAACTTGTGCATCACAT+AGG 0.662724 5:+18883936 None:intergenic
GAGATATAACATTTGCAAGG+AGG 0.666849 5:-18879271 MsaT026232.1:CDS
TTTCCATACGGTGTTCATGG+AGG 0.673202 5:-18877651 MsaT026232.1:CDS
TTTGCAAGGAGGACCAACAA+GGG 0.676614 5:-18879260 MsaT026232.1:CDS
AATGTCGTAGGTGTATGGCA+CGG 0.795308 5:-18877718 MsaT026232.1:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 18877557 18884068 18877557 ID=MsaG026232
Chr5 mRNA 18877557 18884068 18877557 ID=MsaT026232.1;Parent=MsaG026232
Chr5 exon 18877557 18877730 18877557 ID=MsaT026232.1.exon7;Parent=MsaT026232.1
Chr5 CDS 18877557 18877730 18877557 ID=cds.MsaT026232.1;Parent=MsaT026232.1
Chr5 exon 18878020 18878061 18878020 ID=MsaT026232.1.exon6;Parent=MsaT026232.1
Chr5 CDS 18878020 18878061 18878020 ID=cds.MsaT026232.1;Parent=MsaT026232.1
Chr5 exon 18878154 18878195 18878154 ID=MsaT026232.1.exon5;Parent=MsaT026232.1
Chr5 CDS 18878154 18878195 18878154 ID=cds.MsaT026232.1;Parent=MsaT026232.1
Chr5 exon 18878281 18878380 18878281 ID=MsaT026232.1.exon4;Parent=MsaT026232.1
Chr5 CDS 18878281 18878380 18878281 ID=cds.MsaT026232.1;Parent=MsaT026232.1
Chr5 exon 18878473 18878534 18878473 ID=MsaT026232.1.exon3;Parent=MsaT026232.1
Chr5 CDS 18878473 18878534 18878473 ID=cds.MsaT026232.1;Parent=MsaT026232.1
Chr5 exon 18879236 18879311 18879236 ID=MsaT026232.1.exon2;Parent=MsaT026232.1
Chr5 CDS 18879236 18879311 18879236 ID=cds.MsaT026232.1;Parent=MsaT026232.1
Chr5 exon 18883887 18884068 18883887 ID=MsaT026232.1.exon1;Parent=MsaT026232.1
Chr5 CDS 18883887 18884068 18883887 ID=cds.MsaT026232.1;Parent=MsaT026232.1
Gene Sequence

>MsaT026232.1

ATGGGAAGAGGGAAGATTGTGATTCGAAGGATCGACAACTGTACAAGCAGGCAAGTCACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCAAAAGAGTTAGCAATCCTATGTGATGCACAAGTTGGACTTGTTATATTCTCCAGCACTGGAAAGCTTTATGAATATGCAAATACCAGCATGAAATCAGTGATTGAGAGATATAACATTTGCAAGGAGGACCAACAAGGGACAAATCCAGAATCTGAAGTCAAGTTTTGGCAAAGGGAGGCAGAAATTTTAAGGCAGCAACTACAAAGTCTACAAGAAAACCATAGGCAATTGATGGGAGAACAGCTTTATGGTTTGAGTATCAGAAACCTACAAGACCTAGAGAGTCAACTGGAACTTAGCCTCCAAGGAGTTCGCATGAAAAAGGAGAAAATTCTGACAGATGAAATCCAAGAGCTGAACCGAAAGGGAAACATAATCCATCAGGAAAATGTGGAGCTCTATAAGAAGGTGTATGGCACGGTTGATAATGACGCAACTGCAACAAGCAAAAACGCATTTGTTCAATTTCCATACGGTGTTCATGGAGGAGGAGAATATCCACAAACATTATTTCAACTTCAGTTATGCCAGCCTGAGCAAGAATATTGTGAGACCTCAGGCAGTGCAAGTGCAACAAAATGA
Protein sequence

>MsaT026232.1

MGRGKIVIRRIDNCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYANTSMKSVIERYNICKEDQQGTNPESEVKFWQREAEILRQQLQSLQENHRQLMGEQLYGLSIRNLQDLESQLELSLQGVRMKKEKILTDEIQELNRKGNIIHQENVELYKKVYGTVDNDATATSKNAFVQFPYGVHGGGEYPQTLFQLQLCQPEQEYCETSGSASATK*