AlfalfaGEDB | MsaG026285

M. sativa ssp. caerulea / MsaG026285

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026285	XP_003613165.2	98.074	571	11	0	1	571	43	613	0.0	1169

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026285	sp\|F4IB81\|LYK3_ARATH	51.360	331	155	1	247	571	321	651	3.29e-117	364

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026285	tr\|G7JZ13\|G7JZ13_MEDTR	98.074	571	11	0	1	571	43	613	0.0	1169

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000157	MsaG026285	0.808682	4.679931e-50	7.742415e-48
MsaG000180	MsaG026285	0.804829	3.023674e-49	4.565941e-47
MsaG000346	MsaG026285	0.802151	1.079233e-48	1.531967e-46
MsaG000405	MsaG026285	0.854979	1.657760e-61	1.070122e-58
MsaG000622	MsaG026285	0.805412	2.285815e-49	3.498710e-47
MsaG000640	MsaG026285	0.814479	2.606095e-51	4.972143e-49
MsaG000683	MsaG026285	0.840534	1.518429e-57	6.027743e-55
MsaG001009	MsaG026285	0.808620	4.824294e-50	7.968896e-48
MsaG001279	MsaG026285	0.852268	9.886045e-61	5.797195e-58
MsaG002013	MsaG026285	0.801260	1.640432e-48	2.281925e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026285	MtrunA17_Chr5g0413071	98.074	571	11	0	1	571	43	613	0.0	1169
MsaG026285	MtrunA17_Chr8g0340721	36.063	635	333	16	2	571	41	667	8.12e-121	371
MsaG026285	MtrunA17_Chr2g0289131	33.990	609	350	18	1	571	22	616	2.91e-92	295
MsaG026285	MtrunA17_Chr5g0439631	34.981	526	297	14	44	543	86	592	1.72e-89	288
MsaG026285	MtrunA17_Chr5g0439561	32.500	600	334	22	2	554	46	621	1.04e-86	281
MsaG026285	MtrunA17_Chr5g0439701	33.457	538	318	16	44	562	87	603	6.73e-86	278
MsaG026285	MtrunA17_Chr3g0119241	42.857	322	179	3	250	571	305	621	7.19e-86	279
MsaG026285	MtrunA17_Chr5g0439801	32.582	577	299	20	2	543	26	547	1.72e-80	263
MsaG026285	MtrunA17_Chr5g0439571	33.611	601	331	21	4	571	63	628	2.73e-78	259
MsaG026285	MtrunA17_Chr5g0439601	32.801	564	309	23	24	546	67	601	1.08e-76	254

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026285	AT1G51940.1	51.360	331	155	1	247	571	321	651	3.34e-118	364
MsaG026285	AT3G21630.1	36.038	530	307	15	43	554	86	601	7.76e-95	302
MsaG026285	AT5G02800.1	39.597	298	168	6	255	547	61	351	1.67e-65	218
MsaG026285	AT2G28590.1	39.667	300	169	6	255	549	86	378	1.04e-64	218
MsaG026285	AT5G18610.1	38.801	317	182	6	255	566	71	380	3.12e-64	219
MsaG026285	AT5G18610.2	38.801	317	182	6	255	566	71	380	3.12e-64	219
MsaG026285	AT5G18610.3	38.801	317	182	6	255	566	71	380	3.12e-64	219
MsaG026285	AT3G20530.1	38.487	304	176	5	254	552	69	366	3.38e-64	215
MsaG026285	AT4G02010.1	36.041	394	213	14	173	554	299	665	4.87e-64	223
MsaG026285	AT1G61860.1	40.339	295	164	6	254	543	72	359	6.81e-64	214

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Find 97 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATGTATTTGCATT+TGG	0.318707	5:-19592079	MsaT026285.1:CDS
AAAATATCCACTAAGATCTT+TGG	0.337782	5:+19594595	None:intergenic
AAAGGGTCACCACTTTATCA+TGG	0.456016	5:-19594257	MsaT026285.1:CDS
AAATGCTACTATTGATGGCA+TGG	0.576629	5:-19594357	MsaT026285.1:CDS
AACATTCATAGATATTGGTT+GGG	0.476299	5:-19594303	MsaT026285.1:CDS
AACCAATATCTATGAATGTT+GGG	0.434477	5:+19594306	None:intergenic
AACCCAACATTCATAGATAT+TGG	0.283001	5:-19594308	MsaT026285.1:CDS
AATATGATGGATCTTGCATA+AGG	0.435332	5:+19593085	None:intergenic
AATATTTCAAGATGAGGACC+CGG	0.648714	5:-19591831	MsaT026285.1:CDS
AATGAAGTCTAACAAATCCA+AGG	0.592022	5:-19593129	MsaT026285.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	19590870	19594774	19590870	ID=MsaG026285
Chr5	mRNA	19590870	19594774	19590870	ID=MsaT026285.1;Parent=MsaG026285
Chr5	exon	19590870	19591034	19590870	ID=MsaT026285.1.exon10;Parent=MsaT026285.1
Chr5	CDS	19590870	19591034	19590870	ID=cds.MsaT026285.1;Parent=MsaT026285.1
Chr5	exon	19591763	19591861	19591763	ID=MsaT026285.1.exon9;Parent=MsaT026285.1
Chr5	CDS	19591763	19591861	19591763	ID=cds.MsaT026285.1;Parent=MsaT026285.1
Chr5	exon	19591991	19592129	19591991	ID=MsaT026285.1.exon8;Parent=MsaT026285.1
Chr5	CDS	19591991	19592129	19591991	ID=cds.MsaT026285.1;Parent=MsaT026285.1
Chr5	exon	19592210	19592307	19592210	ID=MsaT026285.1.exon7;Parent=MsaT026285.1
Chr5	CDS	19592210	19592307	19592210	ID=cds.MsaT026285.1;Parent=MsaT026285.1
Chr5	exon	19592393	19592544	19592393	ID=MsaT026285.1.exon6;Parent=MsaT026285.1
Chr5	CDS	19592393	19592544	19592393	ID=cds.MsaT026285.1;Parent=MsaT026285.1
Chr5	exon	19592679	19592784	19592679	ID=MsaT026285.1.exon5;Parent=MsaT026285.1
Chr5	CDS	19592679	19592784	19592679	ID=cds.MsaT026285.1;Parent=MsaT026285.1
Chr5	exon	19593079	19593168	19593079	ID=MsaT026285.1.exon4;Parent=MsaT026285.1
Chr5	CDS	19593079	19593168	19593079	ID=cds.MsaT026285.1;Parent=MsaT026285.1
Chr5	exon	19593276	19593415	19593276	ID=MsaT026285.1.exon3;Parent=MsaT026285.1
Chr5	CDS	19593276	19593415	19593276	ID=cds.MsaT026285.1;Parent=MsaT026285.1
Chr5	exon	19593683	19593886	19593683	ID=MsaT026285.1.exon2;Parent=MsaT026285.1
Chr5	CDS	19593683	19593886	19593683	ID=cds.MsaT026285.1;Parent=MsaT026285.1
Chr5	exon	19594252	19594774	19594252	ID=MsaT026285.1.exon1;Parent=MsaT026285.1
Chr5	CDS	19594252	19594774	19594252	ID=cds.MsaT026285.1;Parent=MsaT026285.1

Gene Sequence

>MsaT026285.1

ATGAGAACATGCAATGCATCACTCTACCATATAAACTACAATCACAACATAGAACAAATAGCTAATTTTTATTCTACAGATCCTTCACAAATCAAACCAATAATTCGTAGCACAAAACAAGATTACCTAGTAAAAGTGCCTTGTTCTTGCAAAAACACCAAAGATCTTAGTGGATATTTTTATGAAACAACCTACAAAGTTAGTCCTAATGAAACTTCTGTGGATGTTATGAATCTTATTTATAGTGGTCAAGCTTGGCAAGTTAATGAAGATTTGGTTGCAAATGAGAATGTAACAATACATATTCCTTGTGGATGTTCAGAATTTGAGTCACAAATTGTTGTTACATATTCTGTTCAGCAGGGTGATACACCAACATCAATTTCTCTTTTGCTAAATGCTACTATTGATGGCATGGTGAGAATGAACCAAATTTTGGGTCCTAACCCAACATTCATAGATATTGGTTGGGTGTTATATGTTCCTAAGGAATTAAAAGGGTCACCACTTTATCATGGAAAAGAAAAGAAACACAAGTGGGTGATAATTATTGGTATCTTAGTGAGTGTGACATTACTTTCAGTAATTACCTTGATCATTTTCATTCTCAGGAGAAATAAAGCACATGAAACCAGCAAATATGATCCAAAAACTGTCTCTAAAAGATCATTTGGCAATAGAACTATTTCCTTAAGGAATCATGAGTTTCATAAAGAATATATGGAAGATGCAACACAATTTGATTCAGAAAGACCAGTAATTTATGATTTTGAGGAGATTGAACATGCTACAAATAACTTTGACGAAACTAGAAGGATTGGAGTTGGTGGATATGGTACTGTCTATTTTGGAATGCTAGAGGAGAAAGAGGTTGCTGTGAAGAAAATGAAGTCTAACAAATCCAAGGAGTTCTATGCAGAACTCAAAGCCTTATGCAAGATCCATCATATTAACATTGTGGAGTTGTTAGGATATGCTAGTGGAGATGATCACCTTTATTTGGTGTATGAGTATGTTCCTAATGGATCTCTAAGTGAACACCTTCATGATCCTCTATTGAAAGGTCACCAACCTCTTTCTTGGTGTGCAAGAACTCAAATTGCACTTGATTCAGCAAAGGGTATTGAATACATACATGATTACACGAAAGCGCGATATGTGCACCGTGATATAAAGACTAGTAATATTCTTCTTGATGAGAAGCTGCGAGCCAAGGTAGCCGATTTCGGACTTGCAAAGCTAGTAGAAAGAACCAATGATGAAGAATTTCTAGCAACAAGACTTGTTGGAACACCAGGCTACCTTCCACCAGAATCTGTGAAGGAGCTGCAAGTGACTATAAAAACTGATGTATTTGCATTTGGAGTGGTTATGTCTGAATTGATAACAGGGAAACGTGCATTATTTCGTGACAACAAAGAAACTAACAGTATGAAATCACTTATTGCAGTTGTTAACAAAATATTTCAAGATGAGGACCCGGTAGCTGCTTTAGAAGCTGTTGTAGATGGAAATCTTCTACGTAATTATCCTATAGAAGGTGTCTACAAGATGGCAGAATTATCACGTTGGTGTTTGAGTGAAGAACCAGTGGACAGACCTGAAATGAAAGAGATCGTTGTGGCAGTGTCAAAGATAGTTATGTCTTCAATAGAATGGGAAGCATCACTAGGTGGGGACAGTCAGGTTTTCAGCGGTGTATTTGATGGAAGATAA

Protein sequence

>MsaT026285.1

MRTCNASLYHINYNHNIEQIANFYSTDPSQIKPIIRSTKQDYLVKVPCSCKNTKDLSGYFYETTYKVSPNETSVDVMNLIYSGQAWQVNEDLVANENVTIHIPCGCSEFESQIVVTYSVQQGDTPTSISLLLNATIDGMVRMNQILGPNPTFIDIGWVLYVPKELKGSPLYHGKEKKHKWVIIIGILVSVTLLSVITLIIFILRRNKAHETSKYDPKTVSKRSFGNRTISLRNHEFHKEYMEDATQFDSERPVIYDFEEIEHATNNFDETRRIGVGGYGTVYFGMLEEKEVAVKKMKSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARTQIALDSAKGIEYIHDYTKARYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFLATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVMSELITGKRALFRDNKETNSMKSLIAVVNKIFQDEDPVAALEAVVDGNLLRNYPIEGVYKMAELSRWCLSEEPVDRPEMKEIVVAVSKIVMSSIEWEASLGGDSQVFSGVFDGR*