AlfalfaGEDB | MsaG026322

M. sativa ssp. caerulea / MsaG026322

KEGG: -
GO: -
PFAM: PF04770.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026322	XP_003613092.2	96.094	256	5	1	1	251	17	272	1.33e-179	504

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026322	sp\|Q6YXH5\|ZHD1_ORYSJ	54.918	244	57	5	47	250	47	277	5.01e-76	234

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026322	tr\|G7JXR5\|G7JXR5_MEDTR	96.094	256	5	1	1	251	17	272	6.34e-180	504

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TFs/TRs:

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Gene ID	Type	Classification
MsaG026322	TF	zf-HD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026322	MtrunA17_Chr5g0412501	96.094	256	5	1	1	251	17	272	0.0	504
MsaG026322	MtrunA17_Chr5g0427051	47.232	271	92	9	5	251	25	268	1.17e-64	202
MsaG026322	MtrunA17_Chr3g0133181	54.854	206	71	6	53	247	76	270	8.20e-64	201
MsaG026322	MtrunA17_Chr2g0315941	44.681	235	117	4	27	250	35	267	1.51e-58	186
MsaG026322	MtrunA17_Chr8g0367691	43.333	240	124	3	18	250	33	267	2.04e-56	181
MsaG026322	MtrunA17_Chr1g0188441	45.685	197	89	5	55	250	7	186	4.17e-55	175
MsaG026322	MtrunA17_Chr7g0217231	46.083	217	72	6	57	250	88	282	2.30e-53	176
MsaG026322	MtrunA17_Chr4g0076821	41.597	238	93	4	56	250	112	346	1.27e-51	172
MsaG026322	MtrunA17_Chr5g0404271	42.254	213	94	4	54	250	96	295	2.54e-51	169
MsaG026322	MtrunA17_Chr6g0453231	48.000	200	92	4	57	250	91	284	5.70e-47	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026322	AT4G24660.1	53.769	199	69	4	53	251	45	220	1.83e-67	208
MsaG026322	AT4G24660.2	52.821	195	69	4	53	247	45	216	1.95e-64	201
MsaG026322	AT5G65410.1	51.456	206	85	4	46	251	64	254	4.01e-60	191
MsaG026322	AT2G02540.2	44.811	212	87	5	56	250	86	284	2.27e-58	188
MsaG026322	AT2G02540.1	44.811	212	87	5	56	250	86	284	2.27e-58	188
MsaG026322	AT1G14440.1	44.118	204	93	4	56	250	89	280	9.16e-53	173
MsaG026322	AT1G14440.2	44.118	204	93	4	56	250	89	280	9.16e-53	173
MsaG026322	AT2G18350.1	42.373	236	97	6	22	250	57	260	2.94e-51	168
MsaG026322	AT1G69600.1	42.291	227	112	6	26	247	3	215	1.29e-47	158
MsaG026322	AT5G15210.1	41.880	234	115	4	17	244	17	235	5.59e-46	155

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Find 76 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCACGCAGGAACAGA+AGG	0.559129	5:+20337978	MsaT026322.1:CDS
AAAGTTCCTTCACTTCCTGC+CGG	0.552211	5:-20337640	None:intergenic
AAGAATCATGCTGTAGGAAT+TGG	0.464505	5:+20337583	MsaT026322.1:CDS
AATCATGCTGTAGGAATTGG+TGG	0.538246	5:+20337586	MsaT026322.1:CDS
AATCCAAGTGGTGGTGGAAG+TGG	0.494106	5:+20337931	MsaT026322.1:CDS
AATGGAAAGAGCAACATGGT+TGG	0.614563	5:+20337520	MsaT026322.1:CDS
ACCACCTCCACCTCAGTTCG+CGG	0.465894	5:+20337777	MsaT026322.1:CDS
ACTGAGGTGGAGGTGGTGGA+TGG	0.582533	5:-20337771	None:intergenic
AGAATTCAGAAACATGACGA+AGG	0.667162	5:+20338036	MsaT026322.1:CDS
AGAGTTGTTAAGATGCCTGG+TGG	0.674556	5:+20337439	MsaT026322.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	20337400	20338155	20337400	ID=MsaG026322
Chr5	mRNA	20337400	20338155	20337400	ID=MsaT026322.1;Parent=MsaG026322
Chr5	exon	20337400	20338155	20337400	ID=MsaT026322.1.exon1;Parent=MsaT026322.1
Chr5	CDS	20337400	20338155	20337400	ID=cds.MsaT026322.1;Parent=MsaT026322.1

Gene Sequence

>MsaT026322.1

ATGGGTGGAGGAAATTACGACTCTTTACCAAACTCATCAAGAGTTGTTAAGATGCCTGGTGGAACTGAACCTATCATGGTGACTCATCCACTCAGAAACATCCTCAACAACAACACCAACAATGGAAAGAGCAACATGGTTGGTGGTGTTGGAAATGGAAAAGCAAGGTATAGAGAGTGTCTGAAGAATCATGCTGTAGGAATTGGTGGTCATGCTCTTGATGGTTGCGGTGAGTTTATGCCGGCAGGAAGTGAAGGAACTTTGGAGTCACTAAAATGTGCTGCTTGTAACTGCCACCGTAACTTCCACCGAAAAGAGTCATCGGCAGATGTTACTGCCGGTGACCCTTTTCTGTTGACACACCATCATCACCATCCACCACCTCCACCTCAGTTCGCGGCATATTATCGAACTCCAGCAGGGTATTTGCATGTTTCTGGACAGCAGAGGACTGGGACACTTGCTTTACCGTCAACTTCTGGTGGCGGTGGAGGGACGCAGAGTACGAGGGAAGAGCTTGAAGATGTTTCGAATCCAAGTGGTGGTGGAAGTGGTTCAAGCAAGAAGAGGCATAGGACAAAATTCACGCAGGAACAGAAGGATAAGATGTTGGAGTTAGCTGAGAAATTGGGTTGGAGAATTCAGAAACATGACGAAGGTTTGGTTCAAGAATTCTGTAATGAAAGCGGTGTTAAGCGTCATGTTCTTAAGGTTTGGATGCATAACAACAAACACACTCTAGGTAAGAAGCCCTAG

Protein sequence

>MsaT026322.1

MGGGNYDSLPNSSRVVKMPGGTEPIMVTHPLRNILNNNTNNGKSNMVGGVGNGKARYRECLKNHAVGIGGHALDGCGEFMPAGSEGTLESLKCAACNCHRNFHRKESSADVTAGDPFLLTHHHHHPPPPPQFAAYYRTPAGYLHVSGQQRTGTLALPSTSGGGGGTQSTREELEDVSNPSGGGSGSSKKRHRTKFTQEQKDKMLELAEKLGWRIQKHDEGLVQEFCNESGVKRHVLKVWMHNNKHTLGKKP*