AlfalfaGEDB | MsaG026328

M. sativa ssp. caerulea / MsaG026328

KEGG: K09260
GO: GO:0000003 GO:0000900 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0007275 GO:0008150 GO:0009266 GO:0009628 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090079 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026328	XP_003613086.1	89.583	192	9	1	1	181	1	192	1.47e-113	333

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026328	sp\|Q9FVC1\|SVP_ARATH	63.902	205	51	2	1	182	1	205	4.51e-80	241

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026328	tr\|G7JXQ9\|G7JXQ9_MEDTR	89.583	192	9	1	1	181	1	192	7.01e-114	333

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TFs/TRs:

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Gene ID	Type	Classification
MsaG026328	TF	MADS-MIKC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026328	MtrunA17_Chr5g0412461	89.583	192	9	1	1	181	1	192	1.35e-117	333
MsaG026328	MtrunA17_Chr5g0412271	80.311	193	25	2	1	180	1	193	1.67e-102	295
MsaG026328	MtrunA17_Chr5g0427401	54.190	179	69	3	1	168	1	177	1.62e-53	170
MsaG026328	MtrunA17_Chr4g0049901	47.753	178	80	2	1	165	27	204	8.62e-46	150
MsaG026328	MtrunA17_Chr2g0279821	43.558	163	82	2	1	153	1	163	6.97e-35	123
MsaG026328	MtrunA17_Chr5g0411691	43.275	171	84	5	1	160	1	169	3.64e-34	121
MsaG026328	MtrunA17_Chr5g0420081	45.665	173	80	5	1	160	1	172	3.71e-34	120
MsaG026328	MtrunA17_Chr3g0077501	38.191	199	90	4	1	173	1	192	2.11e-33	119
MsaG026328	MtrunA17_Chr3g0097101	41.040	173	91	2	1	162	16	188	2.91e-33	119
MsaG026328	MtrunA17_Chr4g0049541	42.690	171	86	2	1	160	1	170	1.10e-32	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026328	AT2G22540.3	63.902	205	51	2	1	182	1	205	4.59e-81	241
MsaG026328	AT2G22540.1	63.902	205	51	2	1	182	1	205	4.59e-81	241
MsaG026328	AT2G22540.2	62.927	205	48	3	1	182	1	200	1.31e-77	232
MsaG026328	AT4G24540.1	61.538	169	52	3	1	157	1	168	4.06e-61	189
MsaG026328	AT5G62165.3	41.304	184	88	4	1	168	1	180	1.47e-33	119
MsaG026328	AT5G62165.1	41.304	184	88	4	1	168	1	180	1.47e-33	119
MsaG026328	AT5G62165.2	41.304	184	88	4	1	168	1	180	1.47e-33	119
MsaG026328	AT4G09960.1	37.879	198	94	4	1	173	1	194	4.39e-33	118
MsaG026328	AT4G09960.6	37.879	198	94	4	1	173	2	195	4.55e-33	118
MsaG026328	AT4G09960.5	37.879	198	94	4	1	173	11	204	6.17e-33	118

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Find 28 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGATTGAAAACGCAA+CGG	0.680027	5:-20454542	MsaT026328.1:CDS
AAGAAGAGGATTAATCAAAA+AGG	0.392982	5:-20454494	MsaT026328.1:CDS
AAGTCTCTTGAAACTGGGTT+GGG	0.490075	5:-20451888	MsaT026328.1:CDS
AGAACCGTCGCTAGAGTTGC+AGG	0.391211	5:-20452850	MsaT026328.1:intron
AGACCTTGGTTTCAATTACA+CGG	0.567331	5:+20451865	None:intergenic
AGAGTATTCAAAGAGCTTGC+CGG	0.489914	5:+20454414	None:intergenic
AGATTGAAAACGCAACGGCG+AGG	0.667280	5:-20454537	MsaT026328.1:CDS
AGGAGTTGAATATGAGAACG+TGG	0.723449	5:-20447080	MsaT026328.1:CDS
ATGTTTAACGGTAAAAGTCT+TGG	0.522824	5:-20447103	MsaT026328.1:CDS
CAACTGTTCTAGATTGAGCA+AGG	0.640451	5:-20451997	MsaT026328.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	20441180	20454587	20441180	ID=MsaG026328
Chr5	mRNA	20441180	20454587	20441180	ID=MsaT026328.1;Parent=MsaG026328
Chr5	exon	20441180	20441191	20441180	ID=MsaT026328.1.exon9;Parent=MsaT026328.1
Chr5	CDS	20441180	20441191	20441180	ID=cds.MsaT026328.1;Parent=MsaT026328.1
Chr5	exon	20441837	20441859	20441837	ID=MsaT026328.1.exon8;Parent=MsaT026328.1
Chr5	CDS	20441837	20441859	20441837	ID=cds.MsaT026328.1;Parent=MsaT026328.1
Chr5	exon	20447068	20447134	20447068	ID=MsaT026328.1.exon7;Parent=MsaT026328.1
Chr5	CDS	20447068	20447134	20447068	ID=cds.MsaT026328.1;Parent=MsaT026328.1
Chr5	exon	20447364	20447405	20447364	ID=MsaT026328.1.exon6;Parent=MsaT026328.1
Chr5	CDS	20447364	20447405	20447364	ID=cds.MsaT026328.1;Parent=MsaT026328.1
Chr5	exon	20451747	20451788	20451747	ID=MsaT026328.1.exon5;Parent=MsaT026328.1
Chr5	CDS	20451747	20451788	20451747	ID=cds.MsaT026328.1;Parent=MsaT026328.1
Chr5	exon	20451869	20451935	20451869	ID=MsaT026328.1.exon4;Parent=MsaT026328.1
Chr5	CDS	20451869	20451935	20451869	ID=cds.MsaT026328.1;Parent=MsaT026328.1
Chr5	exon	20451969	20452033	20451969	ID=MsaT026328.1.exon3;Parent=MsaT026328.1
Chr5	CDS	20451969	20452033	20451969	ID=cds.MsaT026328.1;Parent=MsaT026328.1
Chr5	exon	20452851	20452929	20452851	ID=MsaT026328.1.exon2;Parent=MsaT026328.1
Chr5	CDS	20452851	20452929	20452851	ID=cds.MsaT026328.1;Parent=MsaT026328.1
Chr5	exon	20454406	20454587	20454406	ID=MsaT026328.1.exon1;Parent=MsaT026328.1
Chr5	CDS	20454406	20454587	20454406	ID=cds.MsaT026328.1;Parent=MsaT026328.1

Gene Sequence

>MsaT026328.1

ATGGCTCGTGAGAAGATTCAGATAAAGAAGATTGAAAACGCAACGGCGAGGCAAGTGACTTTTTCAAAGAGAAGAAGAGGATTAATCAAAAAGGCTGAAGAACTCTCAGTTTTGTGTGATGCTGATGTTGCTCTCATTATTTTCTCTTCTACCGGCAAGCTCTTTGAATACTCTAACTTAAGCATGAGGGAAATACTTGAAAGACATCATTTGCACTCAAATAATCTTGCAAAGCTCGAAGAACCGTCGCTAGAGTTGCAGCTAGTTGAAAACAGCAACTGTTCTAGATTGAGCAAGGAAGTTGCTCAGAAAAGCCATCAATTAAGTCTGGAAGAATTACAACAATTGGAGAAGTCTCTTGAAACTGGGTTGGGCCGTGTAATTGAAACCAAGGGAGAGAAGATTATGATGGAGATCAATGAGCTACAAACAAAGGGAAGGCAACTGATGGAAGAGAACAACCGACTAAAACGACATGTGACGGACATGTTTAACGGTAAAAGTCTTGGAGGAGTTGAATATGAGAACGTGGTCACTGAAGAAGAGTTAACGACTCCTGGAGGAGAGGCGTTGGTCTAG

Protein sequence

>MsaT026328.1

MAREKIQIKKIENATARQVTFSKRRRGLIKKAEELSVLCDADVALIIFSSTGKLFEYSNLSMREILERHHLHSNNLAKLEEPSLELQLVENSNCSRLSKEVAQKSHQLSLEELQQLEKSLETGLGRVIETKGEKIMMEINELQTKGRQLMEENNRLKRHVTDMFNGKSLGGVEYENVVTEEELTTPGGEALV*