AlfalfaGEDB | MsaG026371

M. sativa ssp. caerulea / MsaG026371

KEGG: K09260
GO: GO:0000003 GO:0000900 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0007275 GO:0008150 GO:0009266 GO:0009628 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045892 GO:0045934 GO:0048367 GO:0048438 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090079 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026371	XP_003613054.1	89.912	228	11	2	1	216	1	228	2.45e-140	401

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026371	sp\|Q9FVC1\|SVP_ARATH	64.167	240	62	4	1	216	1	240	1.31e-96	284

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026371	tr\|G7JWF1\|G7JWF1_MEDTR	89.912	228	11	2	1	216	1	228	1.17e-140	401

TFs/TRs:

Gene ID	Type	Classification
MsaG026371	TF	MADS-MIKC

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000461	MsaG026371	0.811878	9.642717e-51	1.724129e-48
MsaG000906	MsaG026371	0.800519	2.320393e-48	3.174310e-46
MsaG003024	MsaG026371	0.806505	1.350088e-49	2.120400e-47
MsaG003706	MsaG026371	0.801487	1.474810e-48	2.062106e-46
MsaG005665	MsaG026371	0.821695	6.192965e-53	1.424606e-50
MsaG009273	MsaG026371	0.822526	3.982668e-53	9.367582e-51
MsaG011499	MsaG026371	0.825412	8.441140e-54	2.147506e-51
MsaG011845	MsaG026371	0.823164	2.832865e-53	6.778982e-51
MsaG016555	MsaG026371	0.807076	1.023994e-49	1.629982e-47
MsaG026371	MsaG028789	0.801367	1.560470e-48	2.175975e-46
MsaG026371	MsaG035450	0.822833	3.381453e-53	8.019752e-51
MsaG026371	MsaG037664	0.805110	2.642232e-49	4.016056e-47
MsaG026371	MsaG037666	0.813346	4.619193e-51	8.565863e-49
MsaG026371	MsaG038048	0.820565	1.124651e-52	2.510741e-50
MsaG026371	MsaG011923	0.801440	1.507773e-48	2.106019e-46
MsaG026371	MsaG044450	0.803479	5.756965e-49	8.425364e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026371	MtrunA17_Chr5g0412271	89.912	228	11	2	1	216	1	228	2.26e-144	401
MsaG026371	MtrunA17_Chr5g0412461	83.700	227	26	2	1	216	1	227	8.78e-134	375
MsaG026371	MtrunA17_Chr5g0427401	51.327	226	95	6	1	214	1	223	3.03e-62	193
MsaG026371	MtrunA17_Chr4g0049901	45.575	226	96	5	1	214	27	237	2.76e-48	158
MsaG026371	MtrunA17_Chr4g0049541	36.771	223	127	4	1	213	1	219	1.80e-35	125
MsaG026371	MtrunA17_Chr2g0279821	41.718	163	86	1	1	154	1	163	9.58e-35	123
MsaG026371	MtrunA17_Chr3g0097101	41.860	172	90	2	1	162	16	187	3.99e-34	122
MsaG026371	MtrunA17_Chr5g0411691	43.275	171	85	5	1	161	1	169	4.76e-34	121
MsaG026371	MtrunA17_Chr8g0351031	38.053	226	118	8	1	215	1	215	1.55e-33	120
MsaG026371	MtrunA17_Chr3g0077501	41.860	172	74	3	1	154	1	164	1.79e-32	117
MsaG026371	MtrunA17_Chr7g0246431	43.114	167	85	4	1	157	1	167	1.99e-32	116
MsaG026371	MtrunA17_Chr4g0061691	43.787	169	82	4	1	157	1	168	7.06e-32	115
MsaG026371	MtrunA17_Chr4g0057151	42.373	177	92	3	1	167	1	177	2.13e-31	114
MsaG026371	MtrunA17_Chr7g0220121	41.667	168	85	3	1	157	1	166	2.61e-31	115
MsaG026371	MtrunA17_Chr2g0284911	38.265	196	101	3	1	176	16	211	4.85e-31	114
MsaG026371	MtrunA17_Chr4g0061671	37.714	175	90	3	1	161	1	170	6.69e-31	112
MsaG026371	MtrunA17_Chr5g0420081	41.279	172	90	3	1	161	1	172	5.16e-30	111
MsaG026371	MtrunA17_Chr1g0164791	36.638	232	106	8	1	201	1	222	6.27e-30	110
MsaG026371	MtrunA17_Chr8g0380021	37.572	173	96	2	1	162	17	188	1.04e-29	110
MsaG026371	MtrunA17_Chr5g0420091	39.766	171	88	4	1	158	1	169	2.75e-29	108
MsaG026371	MtrunA17_Chr8g0351041	41.615	161	83	4	1	150	1	161	3.38e-29	107
MsaG026371	MtrunA17_Chr7g0220111	40.828	169	86	3	1	157	1	167	3.83e-29	109
MsaG026371	MtrunA17_Chr6g0455511	36.318	201	113	4	1	190	1	197	7.48e-29	108
MsaG026371	MtrunA17_Chr8g0351051	37.017	181	88	2	1	163	1	173	1.41e-28	107
MsaG026371	MtrunA17_Chr4g0020221	36.481	233	128	4	1	213	1	233	1.68e-28	107
MsaG026371	MtrunA17_Chr8g0366231	41.420	169	86	4	1	157	1	168	2.07e-28	107
MsaG026371	MtrunA17_Chr3g0122251	38.983	177	94	3	1	163	1	177	7.81e-28	105
MsaG026371	MtrunA17_Chr1g0204111	32.579	221	127	4	1	210	17	226	7.80e-27	103
MsaG026371	MtrunA17_Chr3g0142191	38.660	194	100	5	1	179	1	190	3.99e-26	100
MsaG026371	MtrunA17_Chr6g0474371	39.306	173	85	4	1	157	1	169	1.16e-25	98.6
MsaG026371	MtrunA17_Chr3g0125241	41.954	174	84	7	1	162	26	194	1.28e-25	99.0
MsaG026371	MtrunA17_Chr1g0173161	72.881	59	16	0	1	59	1	59	1.36e-23	90.1
MsaG026371	MtrunA17_Chr2g0308251	69.492	59	18	0	1	59	1	59	3.96e-23	89.0
MsaG026371	MtrunA17_Chr3g0134451	68.571	70	21	1	1	69	1	70	1.75e-22	93.2
MsaG026371	MtrunA17_Chr4g0018421	37.278	169	94	2	1	157	1	169	5.14e-22	89.4
MsaG026371	MtrunA17_Chr7g0246381	66.102	59	20	0	1	59	1	59	5.71e-21	82.8
MsaG026371	MtrunA17_Chr1g0159661	38.037	163	89	5	1	156	1	158	5.83e-21	85.9
MsaG026371	MtrunA17_Chr8g0377561	65.517	58	20	0	1	58	1	58	1.10e-20	83.2
MsaG026371	MtrunA17_Chr5g0427921	62.712	59	22	0	1	59	1	59	1.60e-20	81.6
MsaG026371	MtrunA17_Chr5g0404951	34.524	168	99	3	1	157	1	168	5.93e-20	84.7
MsaG026371	MtrunA17_Chr5g0425191	65.517	58	20	0	1	58	1	58	1.96e-19	80.1
MsaG026371	MtrunA17_Chr4g0044071	62.069	58	22	0	1	58	1	58	7.76e-19	78.6
MsaG026371	MtrunA17_Chr2g0292791	30.952	210	118	8	3	201	10	203	1.68e-18	80.9
MsaG026371	MtrunA17_Chr2g0325971	48.529	68	35	0	2	69	9	76	4.27e-18	79.7
MsaG026371	MtrunA17_Chr1g0208561	48.529	68	35	0	2	69	9	76	5.03e-18	79.3
MsaG026371	MtrunA17_Chr3g0089141	48.529	68	35	0	2	69	9	76	6.00e-18	79.3
MsaG026371	MtrunA17_Chr3g0099421	53.731	67	31	0	3	69	35	101	2.33e-17	78.2
MsaG026371	MtrunA17_Chr3g0099411	50.000	68	34	0	2	69	9	76	3.30e-17	77.0
MsaG026371	MtrunA17_Chr1g0206721	50.000	68	34	0	2	69	9	76	4.76e-17	77.0
MsaG026371	MtrunA17_Chr1g0208581	49.254	67	34	0	2	68	9	75	5.16e-17	76.6
MsaG026371	MtrunA17_Chr1g0206701	50.000	68	34	0	2	69	9	76	5.49e-17	76.6
MsaG026371	MtrunA17_Chr1g0166611	58.065	62	24	1	13	74	17	76	7.34e-17	73.9
MsaG026371	MtrunA17_Chr1g0206991	50.000	68	34	0	2	69	9	76	7.34e-17	75.5
MsaG026371	MtrunA17_Chr8g0355091	48.529	68	35	0	2	69	9	76	9.95e-17	76.3
MsaG026371	MtrunA17_Chr1g0187361	48.529	68	35	0	2	69	9	76	1.82e-16	75.5
MsaG026371	MtrunA17_Chr1g0149391	52.857	70	32	1	2	71	9	77	2.23e-16	75.1
MsaG026371	MtrunA17_Chr5g0419601	50.725	69	34	0	1	69	8	76	2.28e-16	75.1
MsaG026371	MtrunA17_Chr1g0188671	50.000	68	34	0	2	69	47	114	2.78e-16	75.5
MsaG026371	MtrunA17_Chr5g0422421	51.429	70	33	1	2	71	9	77	3.32e-16	74.7
MsaG026371	MtrunA17_Chr2g0317451	50.000	68	34	0	2	69	9	76	3.76e-16	74.3
MsaG026371	MtrunA17_Chr2g0317481	50.000	68	34	0	2	69	9	76	3.87e-16	74.3
MsaG026371	MtrunA17_Chr8g0379021	50.000	68	34	0	2	69	12	79	5.64e-16	72.8
MsaG026371	MtrunA17_Chr4g0052081	33.803	142	70	5	1	122	1	138	9.67e-16	72.0
MsaG026371	MtrunA17_Chr5g0422941	50.746	67	33	0	2	68	9	75	1.78e-15	72.8
MsaG026371	MtrunA17_Chr3g0119901	37.333	150	69	6	1	150	8	132	2.18e-15	72.0
MsaG026371	MtrunA17_Chr8g0357771	46.154	65	35	0	1	65	1	65	2.66e-15	71.2
MsaG026371	MtrunA17_Chr8g0376821	43.478	69	39	0	1	69	1	69	3.20e-15	70.9
MsaG026371	MtrunA17_Chr2g0300441	46.970	66	35	0	4	69	11	76	4.57e-15	71.6
MsaG026371	MtrunA17_Chr4g0060841	56.604	53	23	0	1	53	1	53	5.90e-15	72.4
MsaG026371	MtrunA17_Chr4g0052061	45.833	72	38	1	1	72	1	71	5.96e-15	69.7
MsaG026371	MtrunA17_Chr2g0333981	34.483	174	91	8	1	161	11	174	7.21e-15	69.7
MsaG026371	MtrunA17_Chr4g0018951	55.357	56	25	0	14	69	24	79	8.47e-15	69.3
MsaG026371	MtrunA17_Chr5g0417661	52.830	53	25	0	1	53	56	108	1.00e-14	68.2
MsaG026371	MtrunA17_Chr3g0089151	45.588	68	37	0	2	69	9	76	1.04e-14	68.2
MsaG026371	MtrunA17_Chr3g0085241	44.928	69	38	0	1	69	40	108	1.46e-14	70.5
MsaG026371	MtrunA17_Chr1g0175611	42.029	69	40	0	1	69	1	69	1.56e-14	68.9
MsaG026371	MtrunA17_Chr1g0169761	48.387	62	32	0	1	62	1	62	1.82e-14	68.9
MsaG026371	MtrunA17_Chr2g0300421	46.154	65	35	0	2	66	9	73	3.16e-14	68.2
MsaG026371	MtrunA17_Chr1g0180591	40.580	69	41	0	1	69	1	69	5.64e-14	67.4
MsaG026371	MtrunA17_Chr8g0356071	41.667	84	48	1	1	83	1	84	6.00e-14	67.0
MsaG026371	MtrunA17_Chr4g0074101	36.634	101	55	2	1	92	1	101	8.60e-14	67.4
MsaG026371	MtrunA17_Chr1g0175601	46.774	62	33	0	1	62	1	62	8.66e-14	67.0
MsaG026371	MtrunA17_Chr3g0111841	44.444	72	38	1	8	77	2	73	3.88e-13	62.4
MsaG026371	MtrunA17_Chr1g0206691	47.458	59	31	0	11	69	1	59	2.12e-12	63.9
MsaG026371	MtrunA17_Chr1g0187351	44.068	59	33	0	11	69	1	59	1.70e-11	58.2
MsaG026371	MtrunA17_Chr4g0071601	49.275	69	35	0	1	69	11	79	5.45e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026371	AT2G22540.3	64.167	240	62	4	1	216	1	240	1.33e-97	284
MsaG026371	AT2G22540.1	64.167	240	62	4	1	216	1	240	1.33e-97	284
MsaG026371	AT2G22540.2	63.333	240	59	5	1	216	1	235	8.81e-94	274
MsaG026371	AT4G24540.1	54.185	227	80	7	1	213	1	217	9.73e-67	205
MsaG026371	AT3G61120.1	43.976	166	85	2	1	158	1	166	1.62e-35	125
MsaG026371	AT2G42830.2	39.512	205	111	4	1	194	16	218	3.64e-34	122
MsaG026371	AT5G62165.3	38.222	225	108	6	1	213	1	206	1.70e-33	119
MsaG026371	AT5G62165.1	38.222	225	108	6	1	213	1	206	1.70e-33	119
MsaG026371	AT5G62165.2	38.222	225	108	6	1	213	1	206	1.70e-33	119
MsaG026371	AT4G09960.1	39.691	194	92	4	1	174	1	189	1.82e-33	120
MsaG026371	AT4G09960.6	39.691	194	92	4	1	174	2	190	1.83e-33	120
MsaG026371	AT4G09960.5	39.691	194	92	4	1	174	11	199	1.84e-33	120
MsaG026371	AT3G58780.5	42.442	172	89	2	1	162	22	193	5.49e-33	119
MsaG026371	AT2G42830.1	40.000	205	108	5	1	194	16	216	5.56e-33	119
MsaG026371	AT4G09960.3	39.691	194	92	4	1	174	27	215	5.87e-33	119
MsaG026371	AT3G58780.1	42.442	172	89	2	1	162	16	187	7.22e-33	119
MsaG026371	AT4G22950.3	39.091	220	109	7	1	203	1	212	1.08e-32	118
MsaG026371	AT4G22950.1	39.091	220	109	7	1	203	1	212	1.08e-32	118
MsaG026371	AT2G14210.1	37.712	236	118	6	1	212	1	231	1.30e-32	118
MsaG026371	AT2G14210.2	39.171	217	109	5	1	199	1	212	1.67e-32	117
MsaG026371	AT3G57230.1	40.449	178	97	2	1	169	1	178	4.72e-32	117
MsaG026371	AT3G57230.4	40.449	178	97	2	1	169	1	178	4.72e-32	117
MsaG026371	AT5G13790.1	37.555	229	114	6	1	213	1	216	5.57e-32	117
MsaG026371	AT4G22950.2	43.750	176	78	5	1	161	1	170	1.25e-31	114
MsaG026371	AT2G45650.1	43.103	174	76	5	1	158	1	167	2.10e-31	115
MsaG026371	AT1G26310.1	36.574	216	112	6	1	202	1	205	3.20e-31	115
MsaG026371	AT1G69120.2	40.698	172	91	3	1	161	1	172	4.14e-31	114
MsaG026371	AT1G69120.1	39.535	172	93	2	1	161	1	172	7.82e-31	114
MsaG026371	AT2G45660.1	41.317	167	88	3	1	157	1	167	8.67e-31	112
MsaG026371	AT5G60910.1	43.787	169	82	5	1	157	1	168	1.08e-30	113
MsaG026371	AT5G13790.2	36.638	232	115	6	1	213	1	219	1.34e-30	114
MsaG026371	AT4G18960.1	37.438	203	102	5	2	184	18	215	2.27e-30	112
MsaG026371	AT5G62165.10	37.778	225	95	7	1	213	1	192	2.46e-30	111
MsaG026371	AT5G62165.4	37.778	225	95	7	1	213	1	192	2.46e-30	111
MsaG026371	AT4G09960.4	37.438	203	88	5	1	174	96	288	3.17e-30	114
MsaG026371	AT3G57230.2	44.030	134	66	2	1	125	1	134	6.31e-30	108
MsaG026371	AT4G09960.2	39.683	189	85	6	1	174	1	175	7.00e-30	110
MsaG026371	AT4G37940.4	40.244	164	87	2	1	154	1	163	7.91e-30	110
MsaG026371	AT2G22630.1	43.182	176	79	6	1	161	1	170	1.12e-29	110
MsaG026371	AT2G22630.2	43.182	176	79	6	1	161	1	170	1.12e-29	110
MsaG026371	AT5G51870.1	41.279	172	90	2	1	161	1	172	1.12e-29	109
MsaG026371	AT5G51870.4	41.667	168	87	2	1	157	1	168	1.92e-29	109
MsaG026371	AT3G58780.2	40.237	169	90	2	1	162	16	180	2.02e-29	110
MsaG026371	AT5G51870.3	41.667	168	87	2	1	157	11	178	2.17e-29	109
MsaG026371	AT3G57390.1	34.034	238	129	4	1	216	1	232	2.64e-29	110
MsaG026371	AT5G23260.2	42.458	179	86	6	1	164	1	177	3.12e-29	109
MsaG026371	AT5G51870.2	42.593	162	74	4	1	143	1	162	3.95e-29	107
MsaG026371	AT4G37940.1	39.024	164	89	2	1	154	1	163	4.28e-29	108
MsaG026371	AT5G23260.4	42.458	179	86	6	1	164	17	193	5.05e-29	109
MsaG026371	AT1G24260.2	39.773	176	92	2	1	162	1	176	1.25e-28	108
MsaG026371	AT2G45660.2	41.667	156	81	3	1	146	1	156	1.31e-28	105
MsaG026371	AT5G51870.5	42.593	162	74	4	1	143	24	185	1.62e-28	106
MsaG026371	AT5G62165.17	41.667	156	81	3	1	146	1	156	1.78e-28	105
MsaG026371	AT5G62165.12	41.667	156	81	3	1	146	1	156	1.78e-28	105
MsaG026371	AT5G62165.11	41.667	156	81	3	1	146	1	156	1.78e-28	105
MsaG026371	AT3G58780.4	43.333	150	75	2	1	140	16	165	1.93e-28	108
MsaG026371	AT1G24260.1	40.000	175	92	3	1	162	1	175	3.87e-28	107
MsaG026371	AT4G37940.3	42.222	135	67	2	1	125	1	134	4.01e-28	105
MsaG026371	AT5G62165.6	44.366	142	69	3	1	132	1	142	5.20e-28	103
MsaG026371	AT5G62165.9	44.366	142	69	3	1	132	1	142	5.20e-28	103
MsaG026371	AT5G62165.7	44.366	142	69	3	1	132	1	142	5.20e-28	103
MsaG026371	AT5G62165.8	44.366	142	69	3	1	132	1	142	5.20e-28	103
MsaG026371	AT5G62165.13	44.366	142	69	3	1	132	1	142	5.20e-28	103
MsaG026371	AT3G30260.1	41.333	150	76	4	1	139	1	149	6.43e-28	106
MsaG026371	AT5G15800.1	41.436	181	91	5	1	168	1	179	1.10e-27	105
MsaG026371	AT3G57390.3	33.476	233	127	4	1	211	1	227	1.36e-27	105
MsaG026371	AT5G15800.2	41.436	181	91	5	1	168	1	179	1.50e-27	105
MsaG026371	AT3G58780.3	37.056	197	89	3	1	162	16	212	2.10e-27	105
MsaG026371	AT5G23260.1	41.899	179	82	7	1	164	17	188	1.39e-26	103
MsaG026371	AT2G03710.3	36.517	178	92	4	1	162	1	173	1.59e-26	101
MsaG026371	AT3G02310.1	34.615	234	122	7	1	214	1	223	1.65e-26	102
MsaG026371	AT1G24260.3	40.000	160	82	2	1	146	1	160	6.21e-26	100
MsaG026371	AT5G62165.14	60.000	75	30	0	1	75	1	75	1.68e-25	96.3
MsaG026371	AT2G03710.2	34.857	175	93	3	1	159	1	170	1.73e-25	100
MsaG026371	AT2G03710.1	34.857	175	93	3	1	159	1	170	1.82e-25	100
MsaG026371	AT4G11880.2	41.139	158	79	4	1	146	1	156	3.47e-25	97.4
MsaG026371	AT4G11880.3	41.139	158	79	4	1	146	1	156	3.47e-25	97.4
MsaG026371	AT4G11880.4	42.775	173	77	6	1	157	1	167	3.86e-25	98.6
MsaG026371	AT4G11880.1	42.775	173	77	6	1	157	1	167	3.86e-25	98.6
MsaG026371	AT3G02310.2	41.176	170	85	5	1	157	1	168	5.08e-25	97.4
MsaG026371	AT5G51860.2	35.979	189	110	2	1	178	1	189	7.63e-25	97.1
MsaG026371	AT5G51860.1	37.500	168	94	2	1	157	1	168	1.12e-24	97.1
MsaG026371	AT5G10140.4	36.517	178	100	5	1	169	1	174	2.09e-24	95.5
MsaG026371	AT5G23260.3	42.308	156	77	5	1	145	1	154	2.23e-24	97.1
MsaG026371	AT5G65070.1	37.209	172	95	4	1	164	1	167	3.08e-24	95.5
MsaG026371	AT5G20240.1	39.877	163	86	5	1	156	1	158	4.97e-24	95.1
MsaG026371	AT5G10140.2	39.860	143	82	4	1	140	1	142	9.70e-24	93.2
MsaG026371	AT5G10140.3	39.860	143	82	4	1	140	1	142	1.39e-23	93.6
MsaG026371	AT5G10140.1	39.860	143	82	4	1	140	1	142	1.40e-23	93.6
MsaG026371	AT5G20240.2	42.963	135	70	4	1	128	1	135	1.57e-23	92.4
MsaG026371	AT5G65050.2	36.471	170	95	4	1	162	1	165	2.62e-23	92.4
MsaG026371	AT5G65050.3	36.471	170	95	4	1	162	1	165	4.68e-23	92.4
MsaG026371	AT5G65060.1	33.333	165	107	2	1	162	1	165	5.79e-23	92.0
MsaG026371	AT3G54340.1	39.103	156	86	3	1	148	1	155	8.76e-23	92.4
MsaG026371	AT5G65060.3	33.533	167	104	3	1	162	1	165	9.04e-23	91.7
MsaG026371	AT5G65050.5	38.415	164	89	5	1	162	1	154	7.80e-22	89.0
MsaG026371	AT5G65070.4	39.552	134	68	4	1	126	1	129	1.24e-21	87.4
MsaG026371	AT5G65060.2	36.585	164	92	4	1	162	1	154	1.28e-21	88.2
MsaG026371	AT5G65050.1	36.527	167	90	5	1	156	1	162	2.61e-21	87.4
MsaG026371	AT1G71692.1	62.500	64	24	0	1	64	1	64	1.32e-20	86.3
MsaG026371	AT5G65070.5	47.872	94	44	2	1	93	1	90	1.62e-19	83.2
MsaG026371	AT5G65070.2	47.872	94	44	2	1	93	1	90	1.84e-19	83.6
MsaG026371	AT5G65070.3	31.863	204	94	5	1	164	1	199	2.96e-19	83.2
MsaG026371	AT1G22130.1	33.184	223	122	8	1	214	1	205	4.97e-19	84.3
MsaG026371	AT1G77080.11	36.970	165	101	3	1	162	1	165	5.38e-19	81.3
MsaG026371	AT1G77980.1	35.897	195	103	8	1	191	1	177	7.97e-19	83.6
MsaG026371	AT1G77080.4	36.364	165	102	3	1	162	1	165	1.51e-18	80.5
MsaG026371	AT1G77080.5	36.364	165	102	3	1	162	1	165	2.45e-18	79.3
MsaG026371	AT4G36590.1	47.191	89	47	0	2	90	7	95	2.75e-18	80.9
MsaG026371	AT5G65080.3	35.256	156	84	5	1	146	8	156	2.89e-17	77.0
MsaG026371	AT1G69540.1	33.333	189	79	7	1	151	1	180	3.98e-17	79.0
MsaG026371	AT1G69540.2	33.333	189	79	7	1	151	1	180	6.30e-17	78.6
MsaG026371	AT5G65080.2	57.627	59	25	0	1	59	8	66	8.78e-17	75.9
MsaG026371	AT1G77080.2	39.181	171	85	4	1	162	1	161	9.64e-17	75.5
MsaG026371	AT1G77950.3	50.000	70	34	1	1	69	1	70	1.68e-16	76.3
MsaG026371	AT1G77950.2	50.000	70	34	1	1	69	1	70	1.68e-16	76.3
MsaG026371	AT1G77950.1	50.000	70	34	1	1	69	1	70	1.68e-16	76.3
MsaG026371	AT1G77950.4	50.000	70	34	1	1	69	1	70	1.68e-16	76.3
MsaG026371	AT2G24840.1	34.228	149	85	4	1	144	62	202	3.70e-16	75.5
MsaG026371	AT2G34440.1	45.588	68	37	0	1	68	1	68	8.05e-16	72.8
MsaG026371	AT1G01530.1	46.269	67	36	0	1	67	6	72	2.38e-15	72.8
MsaG026371	AT2G03060.3	58.491	53	22	0	1	53	1	53	2.39e-15	74.3
MsaG026371	AT2G03060.7	58.491	53	22	0	1	53	1	53	2.39e-15	74.3
MsaG026371	AT2G03060.1	58.491	53	22	0	1	53	1	53	2.39e-15	74.3
MsaG026371	AT2G03060.2	58.491	53	22	0	1	53	1	53	2.84e-15	73.9
MsaG026371	AT1G72350.1	34.524	168	91	5	2	156	43	204	3.74e-15	72.0
MsaG026371	AT1G77080.12	40.000	155	74	4	1	146	1	145	6.23e-15	69.7
MsaG026371	AT4G37435.1	36.879	141	70	5	1	123	1	140	1.12e-14	69.7
MsaG026371	AT5G60440.1	46.269	67	36	0	2	68	7	73	1.92e-14	70.9
MsaG026371	AT1G18750.4	42.857	70	38	1	1	68	1	70	2.44e-14	71.2
MsaG026371	AT1G65360.1	44.118	68	38	0	1	68	6	73	3.07e-14	69.3
MsaG026371	AT1G18750.1	52.830	53	25	0	1	53	1	53	3.10e-14	70.9
MsaG026371	AT1G18750.3	52.830	53	25	0	1	53	1	53	3.12e-14	71.2
MsaG026371	AT3G66656.1	44.118	68	38	0	1	68	1	68	3.42e-14	68.6
MsaG026371	AT1G77080.8	33.673	196	92	6	1	162	1	192	4.32e-14	68.9
MsaG026371	AT1G31140.2	53.226	62	29	0	1	62	1	62	9.37e-14	67.8
MsaG026371	AT1G31140.1	53.226	62	29	0	1	62	1	62	9.46e-14	67.8
MsaG026371	AT2G26320.1	45.333	75	39	1	1	73	17	91	1.15e-13	65.1
MsaG026371	AT3G04100.1	32.258	124	72	3	2	125	14	125	2.07e-13	67.0
MsaG026371	AT1G47760.1	35.398	113	70	2	1	113	1	110	1.11e-12	64.3
MsaG026371	AT1G28460.1	31.892	185	106	7	2	177	8	181	1.41e-12	64.3
MsaG026371	AT3G05860.2	28.571	203	127	7	1	198	1	190	6.50e-12	62.8
MsaG026371	AT3G05860.1	28.431	204	126	8	1	198	1	190	7.88e-12	63.2
MsaG026371	AT3G05860.3	30.935	139	82	5	1	136	1	128	1.25e-11	62.8
MsaG026371	AT1G29962.1	43.284	67	38	0	2	68	8	74	3.14e-11	60.5

Find 48 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGGAAAGGTCTCTTGAAAT+TGG	0.157483	5:+20830226	MsaT026371.1:CDS
ACATTCCTTCAGCCGGTATA+TGG	0.208025	5:-20831749	None:intergenic
GAATATTTCTAACCTTTCTT+TGG	0.260465	5:-20830395	None:intergenic
AAGAAGAGGTTTAATCAAAA+AGG	0.335755	5:+20828590	MsaT026371.1:CDS
TATCTGAACTCTCATAATCT+TGG	0.352501	5:-20831540	None:intergenic
TGTGGAAGAATTACAACAAT+TGG	0.369939	5:+20830207	MsaT026371.1:CDS
CTCAAAGAACCTCGCAAAGC+TGG	0.379678	5:+20829892	MsaT026371.1:CDS
ATCTGAACTCTCATAATCTT+GGG	0.383551	5:-20831539	None:intergenic
TGGAAAGGTCTCTTGAAATT+GGG	0.386838	5:+20830227	MsaT026371.1:CDS
TCTTTGAATACTCCAACTTA+AGG	0.399297	5:+20828679	MsaT026371.1:CDS
AGAACCGTCTCTTGAGTTGC+AGG	0.416179	5:+20829916	MsaT026371.1:CDS
TCAGATACATCGCTCAAGTT+GGG	0.436087	5:+20831556	MsaT026371.1:CDS
CATTCCTTCAGCCGGTATAT+GGG	0.442303	5:-20831748	None:intergenic
ATGATGGATCATAAGGTTGC+GGG	0.443250	5:+20831412	MsaT026371.1:intron
AGGTCTCTTGAAATTGGGTT+GGG	0.470008	5:+20830232	MsaT026371.1:CDS
GAGAAAGAAAGACCTTAAGT+TGG	0.470112	5:-20828691	None:intergenic
TTCAGATACATCGCTCAAGT+TGG	0.479254	5:+20831555	MsaT026371.1:CDS
GATCAATGATCTCCAAAGAA+AGG	0.499633	5:+20830383	MsaT026371.1:CDS
AGATCTTGAAGGTTTGAATG+TGG	0.507969	5:+20830189	MsaT026371.1:intron
AAGGTCTCTTGAAATTGGGT+TGG	0.514161	5:+20830231	MsaT026371.1:CDS
ATTTGCAGGCTCCCATATAC+CGG	0.525181	5:+20831737	MsaT026371.1:intron
ATCATACATGTTGCTTTAGT+CGG	0.530014	5:-20831225	None:intergenic
ATAATCTTGGGGAGGACCAA+TGG	0.530085	5:-20831527	None:intergenic
ATGAGGGGAGAAGATCTTGA+AGG	0.541103	5:+20830178	MsaT026371.1:intron
TATGAGAATGTGATTAATGA+AGG	0.563013	5:+20831469	MsaT026371.1:CDS
TCAGGGAGAGAAGATCATGA+TGG	0.564270	5:+20830359	MsaT026371.1:intron
CCTTGCTCAATCTAGAACAC+TGG	0.565150	5:-20830123	None:intergenic
ATGATTAACGACAGAATGGT+TGG	0.571480	5:+20831436	MsaT026371.1:CDS
CACACAAACATTCCTTCAGC+CGG	0.574541	5:-20831756	None:intergenic
ACCAACGTTTACAACTCCAT+TGG	0.576740	5:+20831511	MsaT026371.1:CDS
TCTGCAGGGAAGGCAACTGA+TGG	0.577814	5:+20831192	MsaT026371.1:intron
AAGAATTACAACAATTGGAA+AGG	0.580010	5:+20830212	MsaT026371.1:CDS
GGGCATGATTAACGACAGAA+TGG	0.581587	5:+20831432	MsaT026371.1:CDS
AACGTTGGTGACAGATTCTG+AGG	0.592708	5:-20831497	None:intergenic
CAGATACATCGCTCAAGTTG+GGG	0.603531	5:+20831557	MsaT026371.1:CDS
ACGGTTCTTCCAGCTTTGCG+AGG	0.603660	5:-20829901	None:intergenic
GCGTGAGGGAAATACTTGAA+AGG	0.613182	5:+20829858	MsaT026371.1:intron
CCAGTGTTCTAGATTGAGCA+AGG	0.618951	5:+20830123	MsaT026371.1:CDS
TCTGAACTCTCATAATCTTG+GGG	0.621502	5:-20831538	None:intergenic
GGGCCGTGTAATAGAAAACA+AGG	0.627922	5:+20830252	MsaT026371.1:CDS
GGCTCCCATATACCGGCTGA+AGG	0.633026	5:+20831744	MsaT026371.1:intron
ATTAACGACAGAATGGTTGG+AGG	0.640229	5:+20831439	MsaT026371.1:CDS
CCAACCTGCAACTCAAGAGA+CGG	0.649927	5:-20829920	None:intergenic
ACCAATGGAGTTGTAAACGT+TGG	0.652128	5:-20831512	None:intergenic
GAACTCTCATAATCTTGGGG+AGG	0.658116	5:-20831535	None:intergenic
AGATTGAAAACGCAACGGCG+AGG	0.667280	5:+20828547	MsaT026371.1:CDS
AAAGAAGATTGAAAACGCAA+CGG	0.680027	5:+20828542	MsaT026371.1:CDS
TGTGCTATGATGAAGCGTGA+GGG	0.683382	5:+20829844	MsaT026371.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	20828519	20831763	20828519	ID=MsaG026371
Chr5	mRNA	20828519	20831763	20828519	ID=MsaT026371.1;Parent=MsaG026371
Chr5	exon	20828519	20828700	20828519	ID=MsaT026371.1.exon1;Parent=MsaT026371.1
Chr5	CDS	20828519	20828700	20828519	ID=cds.MsaT026371.1;Parent=MsaT026371.1
Chr5	exon	20829859	20829937	20829859	ID=MsaT026371.1.exon2;Parent=MsaT026371.1
Chr5	CDS	20829859	20829937	20829859	ID=cds.MsaT026371.1;Parent=MsaT026371.1
Chr5	exon	20830109	20830160	20830109	ID=MsaT026371.1.exon3;Parent=MsaT026371.1
Chr5	CDS	20830109	20830160	20830109	ID=cds.MsaT026371.1;Parent=MsaT026371.1
Chr5	exon	20830191	20830273	20830191	ID=MsaT026371.1.exon4;Parent=MsaT026371.1
Chr5	CDS	20830191	20830273	20830191	ID=cds.MsaT026371.1;Parent=MsaT026371.1
Chr5	exon	20830363	20830404	20830363	ID=MsaT026371.1.exon5;Parent=MsaT026371.1
Chr5	CDS	20830363	20830404	20830363	ID=cds.MsaT026371.1;Parent=MsaT026371.1
Chr5	exon	20831199	20831240	20831199	ID=MsaT026371.1.exon6;Parent=MsaT026371.1
Chr5	CDS	20831199	20831240	20831199	ID=cds.MsaT026371.1;Parent=MsaT026371.1
Chr5	exon	20831427	20831578	20831427	ID=MsaT026371.1.exon7;Parent=MsaT026371.1
Chr5	CDS	20831427	20831578	20831427	ID=cds.MsaT026371.1;Parent=MsaT026371.1
Chr5	exon	20831745	20831763	20831745	ID=MsaT026371.1.exon8;Parent=MsaT026371.1
Chr5	CDS	20831745	20831763	20831745	ID=cds.MsaT026371.1;Parent=MsaT026371.1

Gene Sequence

>MsaT026371.1

ATGGCTCGTGAGAAGATTCAGATAAAGAAGATTGAAAACGCAACGGCGAGGCAAGTGACTTTTTCAAAGAGAAGAAGAGGTTTAATCAAAAAGGCTGAAGAACTCTCAGTTTTGTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGGAAACTCTTTGAATACTCCAACTTAAGCGTGAGGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTCGCAAAGCTGGAAGAACCGTCTCTTGAGTTGCAGCTAGTTGAAAACAGCCAGTGTTCTAGATTGAGCAAGGAAGTTGCTAAGAAGAATCTTGAAGGTTTGAATGTGGAAGAATTACAACAATTGGAAAGGTCTCTTGAAATTGGGTTGGGCCGTGTAATAGAAAACAAGGGAGAGAAGATCATGATGGAGATCAATGATCTCCAAAGAAAGGGAAGGCAACTGATGGAAGAGAACGACCGACTAAAGCAACATGTTGCGGGCATGATTAACGACAGAATGGTTGGAGGTGATGAATATGAGAATGTGATTAATGAAGGTCAATCCTCAGAATCTGTCACCAACGTTTACAACTCCATTGGTCCTCCCCAAGATTATGAGAGTTCAGATACATCGCTCAAGTTGGGGCTCCCATATACCGGCTGA

Protein sequence

>MsaT026371.1

MAREKIQIKKIENATARQVTFSKRRRGLIKKAEELSVLCDADVALIIFSSTGKLFEYSNLSVREILERHHLHSKNLAKLEEPSLELQLVENSQCSRLSKEVAKKNLEGLNVEELQQLERSLEIGLGRVIENKGEKIMMEINDLQRKGRQLMEENDRLKQHVAGMINDRMVGGDEYENVINEGQSSESVTNVYNSIGPPQDYESSDTSLKLGLPYTG*