Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026418 | XP_003613488.1 | 85.892 | 241 | 32 | 1 | 1 | 241 | 1 | 239 | 3.14e-151 | 431 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026418 | sp|Q69WS3|BH094_ORYSJ | 66.265 | 166 | 52 | 3 | 77 | 241 | 94 | 256 | 1.61e-68 | 214 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026418 | tr|G7K714|G7K714_MEDTR | 85.892 | 241 | 32 | 1 | 1 | 241 | 1 | 239 | 1.50e-151 | 431 |
Gene ID | Type | Classification |
---|---|---|
MsaG026418 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026418 | MtrunA17_Chr5g0415291 | 85.892 | 241 | 32 | 1 | 1 | 241 | 1 | 239 | 2.89e-155 | 431 |
MsaG026418 | MtrunA17_Chr8g0363921 | 61.278 | 266 | 65 | 8 | 5 | 241 | 22 | 278 | 6.31e-95 | 279 |
MsaG026418 | MtrunA17_Chr8g0339091 | 58.571 | 140 | 40 | 1 | 74 | 195 | 233 | 372 | 6.21e-45 | 157 |
MsaG026418 | MtrunA17_Chr7g0234761 | 66.387 | 119 | 36 | 1 | 77 | 195 | 284 | 398 | 8.81e-45 | 157 |
MsaG026418 | MtrunA17_Chr3g0144641 | 61.654 | 133 | 40 | 3 | 74 | 196 | 148 | 279 | 1.19e-42 | 149 |
MsaG026418 | MtrunA17_Chr4g0035101 | 50.802 | 187 | 70 | 6 | 23 | 202 | 61 | 232 | 5.63e-42 | 145 |
MsaG026418 | MtrunA17_Chr5g0421111 | 58.462 | 130 | 52 | 2 | 93 | 220 | 343 | 472 | 5.69e-40 | 144 |
MsaG026418 | MtrunA17_Chr8g0365941 | 73.404 | 94 | 24 | 1 | 93 | 185 | 283 | 376 | 1.54e-39 | 142 |
MsaG026418 | MtrunA17_Chr3g0131771 | 82.278 | 79 | 14 | 0 | 107 | 185 | 140 | 218 | 3.04e-39 | 138 |
MsaG026418 | MtrunA17_Chr8g0385911 | 85.333 | 75 | 11 | 0 | 111 | 185 | 142 | 216 | 4.40e-39 | 137 |
MsaG026418 | MtrunA17_Chr1g0152131 | 72.043 | 93 | 25 | 1 | 94 | 185 | 239 | 331 | 1.77e-38 | 138 |
MsaG026418 | MtrunA17_Chr1g0174161 | 78.667 | 75 | 16 | 0 | 111 | 185 | 157 | 231 | 4.30e-36 | 130 |
MsaG026418 | MtrunA17_Chr6g0484271 | 52.381 | 126 | 53 | 1 | 75 | 200 | 123 | 241 | 3.39e-35 | 126 |
MsaG026418 | MtrunA17_Chr7g0258161 | 75.000 | 80 | 20 | 0 | 108 | 187 | 167 | 246 | 3.95e-35 | 127 |
MsaG026418 | MtrunA17_Chr4g0074161 | 61.644 | 73 | 27 | 1 | 107 | 179 | 199 | 270 | 1.57e-20 | 89.4 |
MsaG026418 | MtrunA17_Chr1g0190731 | 56.962 | 79 | 33 | 1 | 101 | 179 | 180 | 257 | 2.02e-20 | 88.6 |
MsaG026418 | MtrunA17_Chr1g0184841 | 38.816 | 152 | 85 | 3 | 58 | 207 | 67 | 212 | 3.15e-16 | 75.9 |
MsaG026418 | MtrunA17_Chr1g0182791 | 47.500 | 80 | 40 | 2 | 116 | 195 | 319 | 396 | 3.39e-15 | 74.3 |
MsaG026418 | MtrunA17_Chr4g0032951 | 53.846 | 65 | 30 | 0 | 114 | 178 | 355 | 419 | 2.68e-14 | 71.6 |
MsaG026418 | MtrunA17_Chr1g0193321 | 48.438 | 64 | 32 | 1 | 116 | 179 | 464 | 526 | 2.72e-14 | 72.0 |
MsaG026418 | MtrunA17_Chr4g0014771 | 47.692 | 65 | 34 | 0 | 114 | 178 | 118 | 182 | 3.70e-13 | 66.2 |
MsaG026418 | MtrunA17_Chr2g0329041 | 49.231 | 65 | 33 | 0 | 112 | 176 | 330 | 394 | 4.70e-13 | 67.8 |
MsaG026418 | MtrunA17_Chr1g0174271 | 49.254 | 67 | 34 | 0 | 114 | 180 | 298 | 364 | 1.88e-12 | 65.9 |
MsaG026418 | MtrunA17_Chr5g0393721 | 32.298 | 161 | 94 | 5 | 26 | 178 | 134 | 287 | 3.53e-12 | 65.1 |
MsaG026418 | MtrunA17_Chr1g0153241 | 35.106 | 94 | 55 | 2 | 87 | 180 | 63 | 150 | 4.31e-12 | 64.3 |
MsaG026418 | MtrunA17_Chr3g0134741 | 44.565 | 92 | 42 | 3 | 90 | 178 | 207 | 292 | 5.02e-12 | 64.3 |
MsaG026418 | MtrunA17_Chr7g0258181 | 43.243 | 74 | 42 | 0 | 114 | 187 | 243 | 316 | 6.08e-12 | 64.3 |
MsaG026418 | MtrunA17_Chr8g0351881 | 47.692 | 65 | 34 | 0 | 114 | 178 | 316 | 380 | 1.48e-11 | 63.5 |
MsaG026418 | MtrunA17_Chr1g0152651 | 48.438 | 64 | 32 | 1 | 115 | 178 | 275 | 337 | 1.86e-11 | 63.2 |
MsaG026418 | MtrunA17_Chr7g0262691 | 43.056 | 72 | 40 | 1 | 108 | 179 | 246 | 316 | 3.92e-11 | 62.4 |
MsaG026418 | MtrunA17_Chr7g0270871 | 45.455 | 55 | 29 | 1 | 125 | 179 | 213 | 266 | 6.68e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG026418 | AT1G59640.1 | 53.571 | 280 | 75 | 9 | 1 | 241 | 1 | 264 | 9.05e-82 | 246 |
MsaG026418 | AT1G59640.2 | 48.315 | 267 | 80 | 10 | 1 | 225 | 1 | 251 | 1.16e-57 | 187 |
MsaG026418 | AT5G62610.2 | 44.043 | 277 | 103 | 8 | 4 | 241 | 18 | 281 | 8.40e-57 | 182 |
MsaG026418 | AT5G62610.1 | 44.043 | 277 | 103 | 8 | 4 | 241 | 18 | 281 | 8.40e-57 | 182 |
MsaG026418 | AT3G23690.1 | 58.065 | 155 | 51 | 3 | 47 | 187 | 110 | 264 | 8.57e-46 | 157 |
MsaG026418 | AT1G68920.3 | 57.432 | 148 | 60 | 3 | 75 | 220 | 263 | 409 | 1.57e-44 | 156 |
MsaG026418 | AT1G68920.1 | 57.432 | 148 | 60 | 3 | 75 | 220 | 264 | 410 | 1.75e-44 | 155 |
MsaG026418 | AT1G68920.4 | 57.432 | 148 | 60 | 3 | 75 | 220 | 264 | 410 | 1.75e-44 | 155 |
MsaG026418 | AT1G68920.2 | 57.432 | 148 | 60 | 3 | 75 | 220 | 264 | 410 | 1.75e-44 | 155 |
MsaG026418 | AT3G07340.2 | 54.286 | 175 | 55 | 6 | 13 | 187 | 182 | 331 | 2.86e-44 | 154 |
MsaG026418 | AT3G07340.1 | 52.459 | 183 | 62 | 6 | 13 | 195 | 182 | 339 | 3.50e-44 | 154 |
MsaG026418 | AT5G50915.3 | 51.852 | 162 | 74 | 3 | 27 | 185 | 47 | 207 | 1.26e-43 | 148 |
MsaG026418 | AT5G50915.4 | 51.852 | 162 | 74 | 3 | 27 | 185 | 47 | 207 | 1.26e-43 | 148 |
MsaG026418 | AT5G50915.1 | 52.174 | 161 | 73 | 3 | 27 | 184 | 47 | 206 | 3.87e-43 | 147 |
MsaG026418 | AT5G50915.2 | 52.174 | 161 | 73 | 3 | 27 | 184 | 47 | 206 | 3.87e-43 | 147 |
MsaG026418 | AT5G48560.2 | 63.200 | 125 | 42 | 1 | 61 | 185 | 252 | 372 | 1.68e-42 | 150 |
MsaG026418 | AT5G48560.1 | 63.200 | 125 | 42 | 1 | 61 | 185 | 252 | 372 | 3.15e-42 | 150 |
MsaG026418 | AT4G34530.1 | 46.591 | 176 | 86 | 2 | 13 | 188 | 79 | 246 | 3.84e-40 | 141 |
MsaG026418 | AT2G18300.2 | 46.369 | 179 | 71 | 4 | 37 | 210 | 121 | 279 | 5.22e-40 | 140 |
MsaG026418 | AT2G18300.3 | 46.369 | 179 | 71 | 4 | 37 | 210 | 121 | 279 | 1.26e-39 | 140 |
MsaG026418 | AT4G36540.1 | 61.111 | 126 | 43 | 3 | 82 | 207 | 113 | 232 | 3.03e-39 | 138 |
MsaG026418 | AT1G26260.3 | 69.000 | 100 | 27 | 1 | 90 | 185 | 144 | 243 | 4.34e-39 | 138 |
MsaG026418 | AT1G10120.2 | 66.327 | 98 | 33 | 0 | 88 | 185 | 180 | 277 | 4.36e-39 | 139 |
MsaG026418 | AT1G10120.1 | 66.327 | 98 | 33 | 0 | 88 | 185 | 180 | 277 | 4.36e-39 | 139 |
MsaG026418 | AT1G26260.5 | 69.000 | 100 | 27 | 1 | 90 | 185 | 173 | 272 | 8.38e-39 | 138 |
MsaG026418 | AT1G26260.4 | 69.000 | 100 | 27 | 1 | 90 | 185 | 195 | 294 | 1.01e-38 | 139 |
MsaG026418 | AT1G26260.1 | 69.000 | 100 | 27 | 1 | 90 | 185 | 195 | 294 | 1.01e-38 | 139 |
MsaG026418 | AT1G26260.6 | 69.000 | 100 | 27 | 1 | 90 | 185 | 195 | 294 | 1.01e-38 | 139 |
MsaG026418 | AT1G26260.2 | 69.000 | 100 | 27 | 1 | 90 | 185 | 195 | 294 | 1.01e-38 | 139 |
MsaG026418 | AT2G18300.1 | 45.810 | 179 | 70 | 4 | 37 | 210 | 121 | 277 | 1.01e-38 | 137 |
MsaG026418 | AT4G36540.2 | 68.269 | 104 | 29 | 2 | 82 | 185 | 113 | 212 | 1.74e-38 | 136 |
MsaG026418 | AT2G42300.4 | 73.750 | 80 | 21 | 0 | 108 | 187 | 179 | 258 | 8.85e-36 | 128 |
MsaG026418 | AT3G57800.2 | 73.810 | 84 | 22 | 0 | 104 | 187 | 194 | 277 | 1.37e-35 | 130 |
MsaG026418 | AT2G42300.1 | 73.750 | 80 | 21 | 0 | 108 | 187 | 179 | 258 | 5.37e-35 | 127 |
MsaG026418 | AT1G73830.1 | 54.167 | 120 | 55 | 0 | 67 | 186 | 100 | 219 | 8.01e-35 | 125 |
MsaG026418 | AT1G73830.2 | 54.167 | 120 | 55 | 0 | 67 | 186 | 100 | 219 | 8.17e-35 | 125 |
MsaG026418 | AT1G18400.2 | 73.333 | 75 | 20 | 0 | 112 | 186 | 143 | 217 | 1.37e-33 | 122 |
MsaG026418 | AT1G25330.1 | 69.231 | 78 | 24 | 0 | 109 | 186 | 99 | 176 | 1.69e-33 | 120 |
MsaG026418 | AT1G18400.1 | 73.333 | 75 | 20 | 0 | 112 | 186 | 143 | 217 | 1.92e-33 | 122 |
MsaG026418 | AT3G57800.1 | 47.328 | 131 | 22 | 1 | 104 | 187 | 194 | 324 | 1.03e-26 | 107 |
MsaG026418 | AT2G24260.2 | 60.274 | 73 | 28 | 1 | 107 | 179 | 28 | 99 | 1.80e-21 | 90.1 |
MsaG026418 | AT4G30980.1 | 49.038 | 104 | 44 | 3 | 76 | 179 | 100 | 194 | 6.90e-21 | 89.7 |
MsaG026418 | AT5G58010.1 | 66.667 | 66 | 21 | 1 | 114 | 179 | 99 | 163 | 1.32e-20 | 88.6 |
MsaG026418 | AT2G24260.1 | 60.274 | 73 | 28 | 1 | 107 | 179 | 131 | 202 | 1.73e-20 | 89.0 |
MsaG026418 | AT4G30980.2 | 66.667 | 66 | 21 | 1 | 114 | 179 | 178 | 242 | 2.00e-20 | 89.0 |
MsaG026418 | AT2G42300.5 | 80.435 | 46 | 9 | 0 | 108 | 153 | 179 | 224 | 4.42e-19 | 83.2 |
MsaG026418 | AT2G42300.3 | 80.435 | 46 | 9 | 0 | 108 | 153 | 179 | 224 | 4.42e-19 | 83.2 |
MsaG026418 | AT2G42300.2 | 80.435 | 46 | 9 | 0 | 108 | 153 | 179 | 224 | 5.33e-19 | 83.2 |
MsaG026418 | AT2G20180.7 | 50.794 | 63 | 30 | 1 | 117 | 179 | 210 | 271 | 2.45e-14 | 72.0 |
MsaG026418 | AT2G20180.1 | 50.794 | 63 | 30 | 1 | 117 | 179 | 210 | 271 | 2.45e-14 | 72.0 |
MsaG026418 | AT2G20180.5 | 50.794 | 63 | 30 | 1 | 117 | 179 | 210 | 271 | 2.45e-14 | 72.0 |
MsaG026418 | AT2G20180.4 | 50.794 | 63 | 30 | 1 | 117 | 179 | 281 | 342 | 3.82e-14 | 71.6 |
MsaG026418 | AT2G20180.6 | 50.794 | 63 | 30 | 1 | 117 | 179 | 281 | 342 | 3.82e-14 | 71.6 |
MsaG026418 | AT2G20180.2 | 50.794 | 63 | 30 | 1 | 117 | 179 | 281 | 342 | 3.82e-14 | 71.6 |
MsaG026418 | AT2G20180.3 | 50.794 | 63 | 30 | 1 | 117 | 179 | 281 | 342 | 3.82e-14 | 71.6 |
MsaG026418 | AT1G09530.3 | 48.438 | 64 | 32 | 1 | 116 | 179 | 339 | 401 | 3.82e-14 | 71.6 |
MsaG026418 | AT1G09530.2 | 48.438 | 64 | 32 | 1 | 116 | 179 | 339 | 401 | 3.82e-14 | 71.6 |
MsaG026418 | AT1G09530.5 | 48.438 | 64 | 32 | 1 | 116 | 179 | 339 | 401 | 3.82e-14 | 71.6 |
MsaG026418 | AT1G09530.1 | 48.438 | 64 | 32 | 1 | 116 | 179 | 339 | 401 | 3.82e-14 | 71.6 |
MsaG026418 | AT1G09530.4 | 48.438 | 64 | 32 | 1 | 116 | 179 | 339 | 401 | 3.82e-14 | 71.6 |
MsaG026418 | AT1G09530.6 | 48.438 | 64 | 32 | 1 | 116 | 179 | 339 | 401 | 3.82e-14 | 71.6 |
MsaG026418 | AT4G02590.3 | 42.623 | 122 | 59 | 4 | 58 | 179 | 37 | 147 | 8.82e-14 | 68.9 |
MsaG026418 | AT4G28815.2 | 45.946 | 74 | 38 | 2 | 117 | 189 | 71 | 143 | 1.30e-13 | 68.6 |
MsaG026418 | AT4G02590.2 | 42.623 | 122 | 59 | 4 | 58 | 179 | 100 | 210 | 2.46e-13 | 68.6 |
MsaG026418 | AT4G02590.1 | 42.623 | 122 | 59 | 4 | 58 | 179 | 100 | 210 | 2.46e-13 | 68.6 |
MsaG026418 | AT4G28815.1 | 45.946 | 74 | 38 | 2 | 117 | 189 | 147 | 219 | 3.69e-13 | 68.2 |
MsaG026418 | AT4G28800.1 | 50.000 | 62 | 30 | 1 | 117 | 178 | 252 | 312 | 4.06e-13 | 68.6 |
MsaG026418 | AT1G51140.1 | 51.562 | 64 | 31 | 0 | 114 | 177 | 304 | 367 | 9.69e-13 | 67.4 |
MsaG026418 | AT4G36930.1 | 34.821 | 112 | 69 | 3 | 120 | 229 | 197 | 306 | 1.10e-12 | 67.0 |
MsaG026418 | AT4G28800.2 | 36.220 | 127 | 58 | 5 | 117 | 222 | 264 | 388 | 1.15e-12 | 67.4 |
MsaG026418 | AT2G20180.8 | 50.000 | 60 | 29 | 1 | 117 | 176 | 281 | 339 | 1.47e-12 | 66.6 |
MsaG026418 | AT4G28790.1 | 30.189 | 159 | 99 | 4 | 31 | 179 | 179 | 335 | 1.59e-12 | 66.6 |
MsaG026418 | AT1G03040.2 | 59.091 | 66 | 26 | 1 | 114 | 179 | 139 | 203 | 1.70e-12 | 66.2 |
MsaG026418 | AT1G03040.1 | 59.091 | 66 | 26 | 1 | 114 | 179 | 144 | 208 | 1.90e-12 | 65.9 |
MsaG026418 | AT1G03040.3 | 48.837 | 86 | 43 | 1 | 114 | 199 | 144 | 228 | 2.52e-12 | 65.9 |
MsaG026418 | AT1G35460.1 | 40.000 | 75 | 45 | 0 | 114 | 188 | 181 | 255 | 4.87e-12 | 64.3 |
MsaG026418 | AT2G42280.1 | 46.154 | 65 | 35 | 0 | 114 | 178 | 279 | 343 | 9.44e-12 | 64.3 |
MsaG026418 | AT2G46970.3 | 37.895 | 95 | 53 | 2 | 90 | 179 | 172 | 265 | 1.08e-11 | 64.3 |
MsaG026418 | AT2G46970.1 | 42.105 | 76 | 38 | 2 | 109 | 179 | 213 | 287 | 1.10e-11 | 64.3 |
MsaG026418 | AT4G09180.1 | 43.284 | 67 | 38 | 0 | 112 | 178 | 182 | 248 | 1.13e-11 | 63.5 |
MsaG026418 | AT2G46970.2 | 37.895 | 95 | 53 | 2 | 90 | 179 | 163 | 256 | 1.16e-11 | 64.3 |
MsaG026418 | AT1G27740.1 | 31.293 | 147 | 69 | 2 | 32 | 178 | 116 | 230 | 1.47e-11 | 63.2 |
MsaG026418 | AT2G42280.3 | 48.485 | 66 | 32 | 1 | 114 | 177 | 279 | 344 | 1.62e-11 | 63.5 |
MsaG026418 | AT4G00050.2 | 47.692 | 65 | 33 | 1 | 114 | 178 | 105 | 168 | 2.45e-11 | 62.8 |
MsaG026418 | AT2G43140.2 | 46.377 | 69 | 37 | 0 | 114 | 182 | 231 | 299 | 2.81e-11 | 62.8 |
MsaG026418 | AT2G43140.1 | 46.377 | 69 | 37 | 0 | 114 | 182 | 134 | 202 | 3.89e-11 | 61.2 |
MsaG026418 | AT4G00050.1 | 47.692 | 65 | 33 | 1 | 114 | 178 | 207 | 270 | 4.08e-11 | 62.4 |
MsaG026418 | AT4G00050.3 | 47.692 | 65 | 33 | 1 | 114 | 178 | 207 | 270 | 5.29e-11 | 62.0 |
MsaG026418 | AT4G28790.2 | 29.677 | 155 | 97 | 4 | 31 | 175 | 179 | 331 | 8.96e-11 | 61.2 |
Find 67 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCAGTAGCTTGACCCCTTC+TGG | 0.262138 | 5:-21607258 | None:intergenic |
GGGGCTAAACTGCGGTCTTC+TGG | 0.273092 | 5:-21605984 | None:intergenic |
ACATGGATGTAGTCTTTCTT+AGG | 0.315186 | 5:-21607230 | None:intergenic |
GCCACGGCCACCACCATTGC+CGG | 0.331116 | 5:-21606116 | None:intergenic |
TGAAAGGATGAAAACTCTTC+AGG | 0.347449 | 5:+21608109 | MsaT026418.1:CDS |
GTGGTAGTGGTGACGGAAAA+AGG | 0.360840 | 5:+21607129 | MsaT026418.1:CDS |
ATACTCTTTCTGCAAGACTA+TGG | 0.386857 | 5:-21607283 | None:intergenic |
CGTATCATCTCCCGGAGATC+TGG | 0.389824 | 5:+21605957 | MsaT026418.1:CDS |
AAAGGAGAAGAAAACAGTTC+AGG | 0.396640 | 5:+21607173 | MsaT026418.1:CDS |
CATTGGAAAATCTCCGAAGC+TGG | 0.412609 | 5:-21606005 | None:intergenic |
CTTCTGGACTGCCAGATCTC+CGG | 0.419175 | 5:-21605968 | None:intergenic |
ACACTGATGGACAGGCTAGA+AGG | 0.420115 | 5:+21608075 | MsaT026418.1:intron |
TCAGTTAAATGCGTTTCAAC+CGG | 0.427861 | 5:+21606097 | MsaT026418.1:CDS |
ACCGGCAATGGTGGTGGCCG+TGG | 0.442087 | 5:+21606115 | MsaT026418.1:CDS |
TTCTGGACTGCCAGATCTCC+GGG | 0.448211 | 5:-21605967 | None:intergenic |
ACTCTTCAGGATTTAGTCCC+TGG | 0.449489 | 5:+21608122 | MsaT026418.1:CDS |
CTACTTGGTGGTGAAGTGAT+TGG | 0.461423 | 5:-21608423 | None:intergenic |
GTGGGTAATTACCACGTTGT+TGG | 0.463305 | 5:-21606143 | None:intergenic |
ATGTAGTCTTTCTTAGGATG+TGG | 0.471510 | 5:-21607224 | None:intergenic |
CACTGATGGACAGGCTAGAA+GGG | 0.476293 | 5:+21608076 | MsaT026418.1:intron |
CCGCAGTTTAGCCCCAGCTT+CGG | 0.487641 | 5:+21605992 | MsaT026418.1:CDS |
AACCATACCTTGTTGCAACC+AGG | 0.489186 | 5:-21608140 | None:intergenic |
TTACATATGCAGCTGGGAGG+TGG | 0.500933 | 5:+21609074 | MsaT026418.1:CDS |
GTTTCAACCGGCAATGGTGG+TGG | 0.501162 | 5:+21606109 | MsaT026418.1:CDS |
AGATAATTCACACCTCTACT+TGG | 0.503743 | 5:-21608438 | None:intergenic |
AGAGTGGTTACATATGCAGC+TGG | 0.504135 | 5:+21609067 | MsaT026418.1:CDS |
ATTGGAAAATCTCCGAAGCT+GGG | 0.505786 | 5:-21606004 | None:intergenic |
GACCCCTTCTGGCTCGAACA+TGG | 0.511902 | 5:-21607247 | None:intergenic |
GGGTTTGTGCAGAATGATGA+TGG | 0.512242 | 5:+21607107 | MsaT026418.1:intron |
TCAGGTTATTGGAAAAGCAT+TGG | 0.514448 | 5:+21608375 | MsaT026418.1:intron |
AAGACATCAGGGAACAGTAA+AGG | 0.528363 | 5:+21607155 | MsaT026418.1:CDS |
CAGAATGATGATGGTGGTAG+TGG | 0.528680 | 5:+21607116 | MsaT026418.1:intron |
CTTGTAGCTTGTGAAGTGAA+TGG | 0.532061 | 5:-21609020 | None:intergenic |
CATCCATGTTCGAGCCAGAA+GGG | 0.533625 | 5:+21607244 | MsaT026418.1:CDS |
AAGACCAACTCCTGGTATTG+AGG | 0.535318 | 5:+21608573 | MsaT026418.1:CDS |
AGAGGAAACGCCTCAATACC+AGG | 0.549144 | 5:-21608583 | None:intergenic |
TGCGTTTCAACCGGCAATGG+TGG | 0.550896 | 5:+21606106 | MsaT026418.1:CDS |
AAATGCGTTTCAACCGGCAA+TGG | 0.555059 | 5:+21606103 | MsaT026418.1:CDS |
TATAATTGATTATCTCATCA+AGG | 0.561459 | 5:-21608399 | None:intergenic |
GGATCCAGCGTATCATCTCC+CGG | 0.570528 | 5:+21605949 | MsaT026418.1:CDS |
ACCATACCTTGTTGCAACCA+GGG | 0.571972 | 5:-21608139 | None:intergenic |
GATGATGGTGGTAGTGGTGA+CGG | 0.576355 | 5:+21607122 | MsaT026418.1:CDS |
GAAGGGAAAAGATTAGTGAA+AGG | 0.577890 | 5:+21608093 | MsaT026418.1:CDS |
TCAGTACTGAGATCTTCCAT+TGG | 0.581952 | 5:-21606022 | None:intergenic |
TAATTCACACCTCTACTTGG+TGG | 0.582744 | 5:-21608435 | None:intergenic |
AACGCCTCAATACCAGGAGT+TGG | 0.584696 | 5:-21608577 | None:intergenic |
ACATCCATGTTCGAGCCAGA+AGG | 0.584719 | 5:+21607243 | MsaT026418.1:CDS |
CCACGTTGTTGGAATTGCCA+CGG | 0.590128 | 5:-21606132 | None:intergenic |
GTAAATTCAAGACCAACTCC+TGG | 0.595020 | 5:+21608565 | MsaT026418.1:CDS |
ATCCATGTTCGAGCCAGAAG+GGG | 0.611344 | 5:+21607245 | MsaT026418.1:CDS |
AGCTGCATATGTAACCACTC+TGG | 0.617342 | 5:-21609065 | None:intergenic |
TTGGAAAATCTCCGAAGCTG+GGG | 0.627605 | 5:-21606003 | None:intergenic |
TTTAGTCCCTGGTTGCAACA+AGG | 0.628236 | 5:+21608133 | MsaT026418.1:CDS |
ATCTCCGGGAGATGATACGC+TGG | 0.632287 | 5:-21605953 | None:intergenic |
ATCACTTCACCACCAAGTAG+AGG | 0.638957 | 5:+21608426 | MsaT026418.1:CDS |
TTGTGAAGTGAATGGTATGG+TGG | 0.648457 | 5:-21609012 | None:intergenic |
GAAAAGTAGAATAGAGACGA+AGG | 0.649676 | 5:+21606069 | MsaT026418.1:CDS |
GAGTGGTTACATATGCAGCT+GGG | 0.656275 | 5:+21609068 | MsaT026418.1:CDS |
ACCACTCTGGTGATGCACCT+CGG | 0.668855 | 5:-21609052 | None:intergenic |
GCTACAAGAGAGTACAGCCG+AGG | 0.682744 | 5:+21609035 | MsaT026418.1:CDS |
AGCTTGTGAAGTGAATGGTA+TGG | 0.687656 | 5:-21609015 | None:intergenic |
AAACAGTTCAGGAAAGCATG+CGG | 0.691753 | 5:+21607184 | MsaT026418.1:CDS |
CCGAAGCTGGGGCTAAACTG+CGG | 0.692738 | 5:-21605992 | None:intergenic |
GCCGAGGTGCATCACCAGAG+TGG | 0.699435 | 5:+21609051 | MsaT026418.1:CDS |
TGGTTACATATGCAGCTGGG+AGG | 0.711832 | 5:+21609071 | MsaT026418.1:CDS |
CCGTGGCAATTCCAACAACG+TGG | 0.733634 | 5:+21606132 | MsaT026418.1:CDS |
TTTGTGCAGAATGATGATGG+TGG | 0.743796 | 5:+21607110 | MsaT026418.1:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 21605947 | 21609115 | 21605947 | ID=MsaG026418 |
Chr5 | mRNA | 21605947 | 21609115 | 21605947 | ID=MsaT026418.1;Parent=MsaG026418 |
Chr5 | exon | 21605947 | 21606153 | 21605947 | ID=MsaT026418.1.exon1;Parent=MsaT026418.1 |
Chr5 | CDS | 21605947 | 21606153 | 21605947 | ID=cds.MsaT026418.1;Parent=MsaT026418.1 |
Chr5 | exon | 21607119 | 21607301 | 21607119 | ID=MsaT026418.1.exon2;Parent=MsaT026418.1 |
Chr5 | CDS | 21607119 | 21607301 | 21607119 | ID=cds.MsaT026418.1;Parent=MsaT026418.1 |
Chr5 | exon | 21608089 | 21608154 | 21608089 | ID=MsaT026418.1.exon3;Parent=MsaT026418.1 |
Chr5 | CDS | 21608089 | 21608154 | 21608089 | ID=cds.MsaT026418.1;Parent=MsaT026418.1 |
Chr5 | exon | 21608379 | 21608447 | 21608379 | ID=MsaT026418.1.exon4;Parent=MsaT026418.1 |
Chr5 | CDS | 21608379 | 21608447 | 21608379 | ID=cds.MsaT026418.1;Parent=MsaT026418.1 |
Chr5 | exon | 21608541 | 21608612 | 21608541 | ID=MsaT026418.1.exon5;Parent=MsaT026418.1 |
Chr5 | CDS | 21608541 | 21608612 | 21608541 | ID=cds.MsaT026418.1;Parent=MsaT026418.1 |
Chr5 | exon | 21608987 | 21609115 | 21608987 | ID=MsaT026418.1.exon6;Parent=MsaT026418.1 |
Chr5 | CDS | 21608987 | 21609115 | 21608987 | ID=cds.MsaT026418.1;Parent=MsaT026418.1 |
Gene Sequence |
Protein sequence |