AlfalfaGEDB | MsaG026425

M. sativa ssp. caerulea / MsaG026425

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026425	AES96431.1	96.226	318	8	2	1	318	1	314	0.0	617

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026425	sp\|Q9LVS0\|KUA1_ARATH	51.872	187	53	3	3	174	1	165	1.16e-54	185

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026425	tr\|G7K6Z9\|G7K6Z9_MEDTR	96.226	318	8	2	1	318	1	314	0.0	617

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TFs/TRs:

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Gene ID	Type	Classification
MsaG026425	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026425	MtrunA17_Chr5g0415191	96.226	318	8	2	1	318	1	314	0.0	617
MsaG026425	MtrunA17_Chr4g0055931	48.309	207	65	5	3	190	1	184	2.10e-55	182
MsaG026425	MtrunA17_Chr2g0331031	48.095	210	60	6	3	185	1	188	1.38e-52	176
MsaG026425	MtrunA17_Chr4g0059701	54.680	203	56	7	24	211	8	189	5.80e-48	162
MsaG026425	MtrunA17_Chr6g0488471	50.000	168	78	3	3	170	1	162	2.99e-45	155
MsaG026425	MtrunA17_Chr8g0389241	40.566	212	81	8	5	190	4	196	6.77e-39	138
MsaG026425	MtrunA17_Chr3g0092621	74.118	85	19	2	105	187	84	167	4.14e-36	128
MsaG026425	MtrunA17_Chr3g0104071	68.966	87	25	1	94	178	134	220	4.44e-34	127
MsaG026425	MtrunA17_Chr4g0062741	72.603	73	20	0	99	171	132	204	2.69e-33	124
MsaG026425	MtrunA17_Chr1g0162081	71.233	73	21	0	99	171	116	188	1.39e-32	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026425	AT1G70000.1	48.632	329	88	12	3	318	1	261	1.13e-73	228
MsaG026425	AT1G70000.2	48.632	329	88	12	3	318	1	261	1.13e-73	228
MsaG026425	AT5G47390.1	51.872	187	53	3	3	174	1	165	1.18e-55	185
MsaG026425	AT5G61620.1	45.652	184	82	5	1	176	6	179	2.83e-46	159
MsaG026425	AT3G16350.1	42.358	229	74	4	3	185	1	217	3.27e-44	155
MsaG026425	AT1G74840.2	52.551	196	55	5	20	199	15	188	7.39e-43	148
MsaG026425	AT1G74840.1	55.000	180	45	4	20	185	15	172	1.28e-42	148
MsaG026425	AT5G56840.1	46.369	179	82	6	3	179	1	167	1.36e-42	147
MsaG026425	AT1G19000.2	51.515	198	52	6	20	195	13	188	3.32e-42	147
MsaG026425	AT1G19000.1	51.515	198	52	6	20	195	13	188	3.32e-42	147

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Find 102 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGTGGCCAAGCCAATT+AGG	0.366908	5:-21712252	MsaT026425.1:CDS
AACAAATATTACCGTATCGG+TGG	0.590836	5:+21713296	None:intergenic
AACACAAGTTGTTCTTGCTG+GGG	0.614508	5:-21713473	MsaT026425.1:CDS
AACAGGTTGGTAAAGGTGAT+TGG	0.456244	5:-21713446	MsaT026425.1:CDS
AACTCAAGAACATGCAACGA+CGG	0.632099	5:-21713839	MsaT026425.1:CDS
AAGAACAAATATTACCGTAT+CGG	0.565553	5:+21713293	None:intergenic
ACTCTTTCAGCACTCATTAC+CGG	0.403021	5:+21712268	None:intergenic
AGAACACAAGTTGTTCTTGC+TGG	0.422978	5:-21713475	MsaT026425.1:CDS
AGAGACTGGATCTCCGGCGG+CGG	0.543258	5:+21713328	None:intergenic
AGAGGCGTGAACGATGTCAT+CGG	0.629917	5:+21713622	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	21712006	21713906	21712006	ID=MsaG026425
Chr5	mRNA	21712006	21713906	21712006	ID=MsaT026425.1;Parent=MsaG026425
Chr5	exon	21712006	21712443	21712006	ID=MsaT026425.1.exon3;Parent=MsaT026425.1
Chr5	CDS	21712006	21712443	21712006	ID=cds.MsaT026425.1;Parent=MsaT026425.1
Chr5	exon	21713308	21713516	21713308	ID=MsaT026425.1.exon2;Parent=MsaT026425.1
Chr5	CDS	21713308	21713516	21713308	ID=cds.MsaT026425.1;Parent=MsaT026425.1
Chr5	exon	21713597	21713906	21713597	ID=MsaT026425.1.exon1;Parent=MsaT026425.1
Chr5	CDS	21713597	21713906	21713597	ID=cds.MsaT026425.1;Parent=MsaT026425.1

Gene Sequence

>MsaT026425.1

ATGTCTTTGTCTCGCACGTGCTCACAGTGCGGCAACAACGGACACAACTCAAGAACATGCAACGACGGTGGAGAAGAAAAAAGCATCATGATTTTTGGTGTTCGACTCACCGGAGGAAACAACCACCCCAACACCTCCACCACCACCACCACCACCACCACCAATAACAATCCTTTCAGAAAAAGTGCTAGCATGACCAACCTCTCTCAATATGAACAACCACCTCCACAAGATTCCAATCCTGCGGATGCCGGTTATGTATCCGATGACATCGTTCACGCCTCTGGTCGATCCAGAGAACGCAAACGAGGTGTTCCTTGGACAGAGGAAGAACACAAGTTGTTCTTGCTGGGGTTGCAACAGGTTGGTAAAGGTGATTGGAGAGGAATTTCTAGAAACTTTGTGAAAACTAGGACACCAACTCAGGTTGCAAGTCATGCTCAGAAGTATTTCCTCCGCCGTCATAACCAGAACCGCCGCCGCCGGAGATCCAGTCTCTTTGATATTACCACCGATACGGTGATGGAACCTTCAACTATAATGGAAGATGATCAATTTCAGCAAGAAACAGTGGCGCCACTGCCACCACCAACCCCCGCCGCATATCCATCTTCACATTATGGCGGCATCCCTGGGACACCTTTTCCGATGGGTCTTGGTCCGGTAACATTGCCGGTAATGAGTGCTGAAAGAGTGGCCAAGCCAATTAGGCCAACACCAATGCTGCCTCCTTCTTCTAAGATGGCTAATCTGAACTTGAAAGACAAAGCTGCTTCTTCTTCTTCCATCGAGCCTTTTCCATTGTCATTGAAGCTGCAACCTTCGGTTCCATCGGAAGATCATTCACCGGAAAGTAGCAGCCATTCGTCGTCATCGGCTTCATCATCGCCTTTTAAAACCATGGCTGCAGGGAAGTATAATGGTGGGGGTGGGGATAGCATTATCAGTGTTGCTTGA

Protein sequence

>MsaT026425.1

MSLSRTCSQCGNNGHNSRTCNDGGEEKSIMIFGVRLTGGNNHPNTSTTTTTTTTNNNPFRKSASMTNLSQYEQPPPQDSNPADAGYVSDDIVHASGRSRERKRGVPWTEEEHKLFLLGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMEPSTIMEDDQFQQETVAPLPPPTPAAYPSSHYGGIPGTPFPMGLGPVTLPVMSAERVAKPIRPTPMLPPSSKMANLNLKDKAASSSSIEPFPLSLKLQPSVPSEDHSPESSSHSSSSASSSPFKTMAAGKYNGGGGDSIISVA*