AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG026494

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG026494 MtrunA17_Chr5g0414561 91.176 68 6 0 8 75 495 562 1.97e-38 134
MsaG026494 MtrunA17_Chr7g0239381 88.235 68 8 0 8 75 492 559 2.56e-37 131
MsaG026494 MtrunA17_Chr7g0239371 85.294 68 10 0 8 75 488 555 5.39e-36 127
MsaG026494 MtrunA17_Chr3g0112111 79.412 68 14 0 8 75 498 565 6.44e-33 119
MsaG026494 MtrunA17_Chr7g0239331 66.176 68 23 0 8 75 490 557 4.19e-26 100
MsaG026494 MtrunA17_Chr7g0239361 62.857 70 24 1 8 75 507 576 7.47e-26 99.4
MsaG026494 MtrunA17_Chr7g0239181 64.706 68 24 0 8 75 500 567 1.46e-25 98.6
MsaG026494 MtrunA17_Chr1g0172951 63.235 68 25 0 8 75 492 559 2.22e-25 97.8
MsaG026494 MtrunA17_Chr7g0239171 64.706 68 24 0 8 75 483 550 6.43e-25 96.7
MsaG026494 MtrunA17_Chr7g0239211 61.765 68 26 0 8 75 492 559 1.71e-24 95.5
MsaG026494 MtrunA17_Chr7g0239191 60.294 68 27 0 8 75 523 590 7.60e-24 93.6
MsaG026494 MtrunA17_Chr7g0239261 60.294 68 27 0 8 75 488 555 2.98e-23 91.7
MsaG026494 MtrunA17_Chr7g0239321 60.294 68 27 0 8 75 489 556 6.69e-23 90.9
MsaG026494 MtrunA17_Chr7g0239221 60.294 68 27 0 8 75 494 561 1.49e-22 89.7
MsaG026494 MtrunA17_Chr4g0058561 53.086 81 31 1 8 88 504 577 1.02e-21 87.4
MsaG026494 MtrunA17_Chr2g0324171 70.588 51 15 0 11 61 498 548 1.54e-19 81.3
MsaG026494 MtrunA17_Chr2g0324471 70.588 51 15 0 11 61 522 572 3.73e-19 80.1
MsaG026494 MtrunA17_Chr3g0102451 51.471 68 32 1 8 75 476 542 9.35e-19 79.0
MsaG026494 MtrunA17_Chr2g0282271 59.259 54 22 0 8 61 503 556 1.12e-18 79.0
MsaG026494 MtrunA17_Chr7g0239281 53.030 66 31 0 10 75 375 440 4.25e-17 74.3
MsaG026494 MtrunA17_Chr3g0078761 47.059 68 35 1 8 75 496 562 1.31e-16 72.8
MsaG026494 MtrunA17_Chr5g0446651 47.059 68 35 1 8 75 509 575 1.31e-16 72.8
MsaG026494 MtrunA17_Chr1g0191091 46.774 62 33 0 4 65 10 71 8.37e-16 65.5
MsaG026494 MtrunA17_Chr2g0324481 65.909 44 15 0 17 60 506 549 1.71e-15 69.7
MsaG026494 MtrunA17_Chr4g0049581 46.269 67 35 1 10 75 501 567 2.00e-15 69.7
MsaG026494 MtrunA17_Chr8g0367071 45.588 68 37 0 8 75 504 571 2.48e-15 69.3
MsaG026494 MtrunA17_Chr5g0433941 56.364 55 24 0 10 64 519 573 2.84e-15 69.3
MsaG026494 MtrunA17_Chr4g0049611 45.588 68 37 0 8 75 491 558 3.04e-15 68.9
MsaG026494 MtrunA17_Chr7g0274661 38.806 67 41 0 9 75 524 590 1.50e-14 67.0
MsaG026494 MtrunA17_Chr4g0049601 52.941 51 24 0 10 60 509 559 1.83e-14 67.0
MsaG026494 MtrunA17_Chr4g0049561 44.118 68 38 0 8 75 496 563 1.99e-14 66.6
MsaG026494 MtrunA17_Chr8g0366981 53.704 54 25 0 8 61 450 503 7.60e-14 65.1
MsaG026494 MtrunA17_Chr2g0333181 50.000 64 30 1 8 69 190 253 1.36e-13 64.3
MsaG026494 MtrunA17_Chr4g0060011 42.466 73 41 1 3 75 460 531 1.64e-13 63.9
MsaG026494 MtrunA17_Chr8g0366971 51.852 54 26 0 8 61 224 277 2.14e-13 63.5
MsaG026494 MtrunA17_Chr3g0140861 50.000 62 30 1 3 63 806 867 2.46e-13 63.5
MsaG026494 MtrunA17_Chr3g0096351 38.462 78 48 0 8 85 331 408 2.94e-13 63.5
MsaG026494 MtrunA17_Chr2g0313911 39.744 78 47 0 8 85 222 299 3.36e-13 63.2
MsaG026494 MtrunA17_Chr1g0170201 50.000 62 28 1 14 75 509 567 3.71e-13 63.2
MsaG026494 MtrunA17_Chr4g0072901 55.556 54 24 0 8 61 192 245 4.02e-13 62.8
MsaG026494 MtrunA17_Chr5g0409041 42.647 68 39 0 8 75 453 520 4.39e-13 62.8
MsaG026494 MtrunA17_Chr7g0274651 43.333 60 34 0 16 75 527 586 5.59e-13 62.8
MsaG026494 MtrunA17_Chr5g0443121 38.462 78 48 0 8 85 333 410 5.81e-13 62.4
MsaG026494 MtrunA17_Chr1g0175411 56.818 44 19 0 16 59 496 539 9.54e-13 62.0
MsaG026494 MtrunA17_Chr7g0271451 41.892 74 43 0 12 85 349 422 1.06e-12 61.6
MsaG026494 MtrunA17_Chr5g0402071 47.458 59 31 0 17 75 326 384 1.12e-12 61.6
MsaG026494 MtrunA17_Chr8g0366931 43.478 69 38 1 8 75 174 242 1.21e-12 61.6
MsaG026494 MtrunA17_Chr2g0302631 40.541 74 44 0 12 85 338 411 1.27e-12 61.6
MsaG026494 MtrunA17_Chr4g0072891 46.667 60 32 0 3 62 412 471 1.44e-12 61.6
MsaG026494 MtrunA17_Chr4g0049551 38.158 76 43 1 8 79 509 584 1.80e-12 61.2
MsaG026494 MtrunA17_Chr1g0175421 54.545 44 20 0 16 59 294 337 1.85e-12 61.2
MsaG026494 MtrunA17_Chr2g0328201 47.458 59 31 0 16 74 38 96 2.36e-12 59.3
MsaG026494 MtrunA17_Chr8g0373501 49.091 55 27 1 17 70 494 548 2.48e-12 60.8
MsaG026494 MtrunA17_Chr5g0403891 49.091 55 27 1 17 70 413 467 2.54e-12 60.8
MsaG026494 MtrunA17_Chr4g0069251 40.541 74 44 0 12 85 333 406 2.63e-12 60.8
MsaG026494 MtrunA17_Chr1g0191631 48.276 58 30 0 17 74 311 368 2.65e-12 60.5
MsaG026494 MtrunA17_Chr5g0434141 40.299 67 40 0 8 74 745 811 3.10e-12 60.5
MsaG026494 MtrunA17_Chr7g0248491 40.580 69 41 0 17 85 320 388 3.26e-12 60.5
MsaG026494 MtrunA17_Chr8g0348451 40.580 69 41 0 17 85 303 371 3.41e-12 60.5
MsaG026494 MtrunA17_Chr8g0358121 44.643 56 31 0 3 58 608 663 3.42e-12 60.5
MsaG026494 MtrunA17_Chr1g0189791 49.180 61 31 0 14 74 229 289 3.44e-12 60.5
MsaG026494 MtrunA17_Chr1g0175451 56.818 44 19 0 16 59 493 536 3.53e-12 60.5
MsaG026494 MtrunA17_Chr4g0048681 45.763 59 32 0 17 75 440 498 3.68e-12 60.5
MsaG026494 MtrunA17_Chr8g0358141 44.643 56 31 0 3 58 224 279 3.70e-12 60.1
MsaG026494 MtrunA17_Chr5g0398441 41.935 62 36 0 14 75 768 829 3.80e-12 60.1
MsaG026494 MtrunA17_Chr8g0357991 44.643 56 31 0 3 58 631 686 4.05e-12 60.1
MsaG026494 MtrunA17_Chr3g0081001 64.286 42 15 0 17 58 503 544 4.59e-12 60.1
MsaG026494 MtrunA17_Chr8g0357881 46.429 56 30 0 3 58 622 677 4.91e-12 60.1
MsaG026494 MtrunA17_Chr3g0144551 44.444 63 35 0 12 74 288 350 5.06e-12 59.7
MsaG026494 MtrunA17_Chr7g0236651 43.939 66 35 1 10 75 640 703 5.58e-12 59.7
MsaG026494 MtrunA17_Chr8g0366991 38.961 77 42 2 8 79 619 695 6.58e-12 59.7
MsaG026494 MtrunA17_Chr8g0392271 38.806 67 41 0 8 74 730 796 6.63e-12 59.7
MsaG026494 MtrunA17_Chr4g0048661 39.726 73 44 0 3 75 183 255 6.64e-12 59.3
MsaG026494 MtrunA17_Chr1g0161711 41.791 67 39 0 8 74 726 792 6.89e-12 59.7
MsaG026494 MtrunA17_Chr7g0270121 45.763 59 32 0 3 61 528 586 6.95e-12 59.7
MsaG026494 MtrunA17_Chr4g0048791 39.726 73 44 0 3 75 678 750 7.35e-12 59.3
MsaG026494 MtrunA17_Chr3g0098391 50.000 56 28 0 17 72 60 115 7.61e-12 58.9
MsaG026494 MtrunA17_Chr5g0413511 51.111 45 22 0 17 61 216 260 7.93e-12 59.3
MsaG026494 MtrunA17_Chr8g0357981 44.643 56 31 0 3 58 451 506 8.79e-12 59.3
MsaG026494 MtrunA17_Chr8g0358101 44.643 56 31 0 3 58 610 665 8.90e-12 59.3
MsaG026494 MtrunA17_Chr8g0358071 44.643 56 31 0 3 58 622 677 8.91e-12 59.3
MsaG026494 MtrunA17_Chr4g0042381 48.276 58 30 0 17 74 613 670 9.90e-12 58.9
MsaG026494 MtrunA17_Chr4g0042391 48.276 58 30 0 17 74 613 670 9.90e-12 58.9
MsaG026494 MtrunA17_Chr2g0326901 49.123 57 28 1 16 71 389 445 1.03e-11 58.9
MsaG026494 MtrunA17_Chr3g0111431 49.275 69 31 2 20 84 349 417 1.05e-11 58.9
MsaG026494 MtrunA17_Chr6g0456231 43.478 69 38 1 8 75 451 519 1.11e-11 58.9
MsaG026494 MtrunA17_Chr3g0121971 44.444 63 35 0 12 74 742 804 1.18e-11 58.9
MsaG026494 MtrunA17_Chr8g0367241 41.176 68 40 0 3 70 310 377 1.26e-11 58.9
MsaG026494 MtrunA17_Chr4g0034931 46.552 58 31 0 17 74 299 356 1.28e-11 58.5
MsaG026494 MtrunA17_Chr6g0485761 53.333 45 21 0 17 61 452 496 1.33e-11 58.5
MsaG026494 MtrunA17_Chr1g0206391 55.556 45 20 0 17 61 200 244 1.35e-11 58.5
MsaG026494 MtrunA17_Chr4g0048741 38.356 73 45 0 3 75 678 750 1.35e-11 58.5
MsaG026494 MtrunA17_Chr8g0358161 44.643 56 31 0 3 58 192 247 1.37e-11 58.5
MsaG026494 MtrunA17_Chr1g0196381 43.478 69 37 1 3 71 261 327 1.46e-11 58.5
MsaG026494 MtrunA17_Chr4g0048731 48.214 56 29 0 3 58 192 247 1.55e-11 58.5
MsaG026494 MtrunA17_Chr4g0048711 48.214 56 29 0 3 58 75 130 1.58e-11 58.5
MsaG026494 MtrunA17_Chr8g0357961 44.643 56 31 0 3 58 630 685 1.73e-11 58.5
MsaG026494 MtrunA17_Chr3g0144481 45.763 59 31 1 17 74 246 304 1.75e-11 58.2
MsaG026494 MtrunA17_Chr8g0358781 40.299 67 40 0 8 74 492 558 1.75e-11 58.5
MsaG026494 MtrunA17_Chr7g0220741 42.029 69 39 1 8 75 453 521 1.76e-11 58.5
MsaG026494 MtrunA17_Chr4g0042341 52.459 61 23 2 17 74 683 740 1.78e-11 58.5
MsaG026494 MtrunA17_Chr4g0035464 39.655 58 35 0 3 60 830 887 1.80e-11 58.5
MsaG026494 MtrunA17_Chr8g0358081 42.857 56 32 0 3 58 607 662 1.92e-11 58.2
MsaG026494 MtrunA17_Chr0c03g0490031 42.029 69 39 1 8 75 448 516 1.95e-11 58.2
MsaG026494 MtrunA17_Chr8g0361441 59.524 42 17 0 17 58 666 707 2.13e-11 58.2
MsaG026494 MtrunA17_Chr7g0275131 45.161 62 34 0 13 74 230 291 2.22e-11 58.2
MsaG026494 MtrunA17_Chr5g0412141 41.176 68 40 0 3 70 282 349 2.43e-11 57.8
MsaG026494 MtrunA17_Chr2g0277731 41.538 65 36 1 12 74 470 534 2.63e-11 57.8
MsaG026494 MtrunA17_Chr4g0028841 51.852 54 25 1 19 71 396 449 3.12e-11 57.8
MsaG026494 MtrunA17_Chr4g0069241 53.333 45 21 0 17 61 232 276 3.22e-11 57.4
MsaG026494 MtrunA17_Chr7g0236471 45.763 59 32 0 17 75 500 558 3.39e-11 57.4
MsaG026494 MtrunA17_Chr8g0354651 46.296 54 29 0 17 70 264 317 3.70e-11 57.4
MsaG026494 MtrunA17_Chr4g0048781 38.356 73 45 0 3 75 134 206 3.77e-11 57.4
MsaG026494 MtrunA17_Chr4g0042361 51.724 58 28 0 17 74 699 756 3.79e-11 57.4
MsaG026494 MtrunA17_Chr7g0262521 48.000 50 26 0 12 61 501 550 3.91e-11 57.4
MsaG026494 MtrunA17_Chr8g0344141 46.552 58 31 0 17 74 243 300 4.26e-11 57.4
MsaG026494 MtrunA17_Chr8g0382101 42.623 61 33 1 17 75 443 503 4.34e-11 57.4
MsaG026494 MtrunA17_Chr8g0377951 41.270 63 37 0 12 74 726 788 4.75e-11 57.0
MsaG026494 MtrunA17_Chr1g0183041 45.161 62 33 1 12 72 506 567 4.85e-11 57.0
MsaG026494 MtrunA17_Chr1g0206401 54.762 42 19 0 17 58 510 551 5.32e-11 57.0
MsaG026494 MtrunA17_Chr4g0064511 46.552 58 31 0 17 74 376 433 5.80e-11 57.0
MsaG026494 MtrunA17_Chr2g0312561 49.020 51 26 0 13 63 198 248 5.88e-11 56.6
MsaG026494 MtrunA17_Chr0c01g0489481 47.273 55 28 1 17 70 488 542 6.14e-11 57.0
MsaG026494 MtrunA17_Chr6g0452761 55.319 47 21 0 17 63 300 346 6.19e-11 56.6
MsaG026494 MtrunA17_Chr2g0283111 45.763 59 32 0 3 61 755 813 6.19e-11 57.0
MsaG026494 MtrunA17_Chr4g0042351 48.276 58 30 0 17 74 613 670 6.26e-11 56.6
MsaG026494 MtrunA17_Chr7g0221191 47.826 46 24 0 17 62 552 597 6.31e-11 56.6
MsaG026494 MtrunA17_Chr8g0380681 33.784 74 48 1 3 75 1135 1208 6.45e-11 56.6
MsaG026494 MtrunA17_Chr8g0358061 42.857 56 32 0 3 58 202 257 6.61e-11 56.6
MsaG026494 MtrunA17_Chr2g0288121 43.860 57 32 0 18 74 204 260 6.69e-11 56.6
MsaG026494 MtrunA17_Chr8g0342071 41.429 70 39 1 3 70 596 665 6.79e-11 56.6
MsaG026494 MtrunA17_Chr7g0236691 57.143 49 19 1 10 58 655 701 6.99e-11 56.6
MsaG026494 MtrunA17_Chr7g0259211 49.020 51 26 0 12 62 442 492 7.47e-11 56.6
MsaG026494 MtrunA17_Chr4g0042401 57.143 42 18 0 17 58 663 704 7.63e-11 56.6
MsaG026494 MtrunA17_Chr8g0348631 48.148 54 28 0 10 63 290 343 8.06e-11 56.6
MsaG026494 MtrunA17_Chr7g0237401 50.000 46 23 0 17 62 254 299 8.28e-11 56.2
MsaG026494 MtrunA17_Chr6g0453001 44.068 59 33 0 17 75 222 280 8.76e-11 56.2
MsaG026494 MtrunA17_Chr8g0385051 42.623 61 33 1 17 75 433 493 9.75e-11 56.2
MsaG026494 MtrunA17_Chr7g0236641 47.458 59 31 0 17 75 685 743 9.94e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG026494 AT3G55550.1 67.647 68 22 0 8 75 496 563 3.86e-29 108
MsaG026494 AT2G37710.1 66.667 69 22 1 8 75 496 564 8.22e-26 99.4
MsaG026494 AT4G02420.1 66.667 69 22 1 8 75 499 567 1.17e-24 96.3
MsaG026494 AT1G70110.1 58.824 68 28 0 8 75 493 560 2.45e-24 95.5
MsaG026494 AT3G59740.1 61.765 68 26 0 8 75 486 553 4.06e-24 94.7
MsaG026494 AT4G02410.1 65.217 69 23 1 8 75 504 572 8.86e-24 93.6
MsaG026494 AT3G53810.1 62.319 69 25 1 8 75 496 564 1.25e-23 93.2
MsaG026494 AT3G59750.1 60.294 68 27 0 8 75 453 520 1.56e-23 93.2
MsaG026494 AT4G29050.1 56.522 69 29 1 8 75 493 561 5.32e-22 88.6
MsaG026494 AT4G29050.2 56.522 69 29 1 8 75 507 575 5.33e-22 88.6
MsaG026494 AT3G59700.1 55.882 68 30 0 8 75 488 555 7.70e-22 88.2
MsaG026494 AT1G15530.1 60.294 68 26 1 8 75 509 575 8.51e-21 85.1
MsaG026494 AT1G70130.1 51.471 68 33 0 8 75 483 550 9.66e-21 85.1
MsaG026494 AT5G59260.1 50.685 73 35 1 8 79 504 576 3.85e-20 83.6
MsaG026494 AT2G43700.3 52.239 67 32 0 8 74 460 526 4.76e-20 83.2
MsaG026494 AT2G43700.5 52.239 67 32 0 8 74 460 526 4.76e-20 83.2
MsaG026494 AT2G43700.2 52.239 67 32 0 8 74 460 526 4.76e-20 83.2
MsaG026494 AT2G43700.4 52.239 67 32 0 8 74 460 526 4.76e-20 83.2
MsaG026494 AT2G43700.1 52.239 67 32 0 8 74 484 550 4.77e-20 83.2
MsaG026494 AT5G60280.1 55.882 68 29 1 8 75 486 552 5.57e-20 82.8
MsaG026494 AT3G08870.1 54.412 68 27 1 8 75 519 582 4.36e-19 80.5
MsaG026494 AT3G08870.2 54.412 68 27 1 8 75 540 603 4.36e-19 80.5
MsaG026494 AT5G59270.1 47.945 73 37 1 8 79 498 570 7.43e-19 79.7
MsaG026494 AT5G59270.3 47.945 73 37 1 8 79 501 573 7.43e-19 79.7
MsaG026494 AT5G59270.2 47.945 73 37 1 8 79 517 589 7.44e-19 79.7
MsaG026494 AT4G04960.2 77.778 45 10 0 17 61 508 552 1.26e-18 79.0
MsaG026494 AT4G04960.1 77.778 45 10 0 17 61 508 552 1.27e-18 79.0
MsaG026494 AT5G01550.1 63.636 55 20 0 8 62 532 586 1.36e-18 79.0
MsaG026494 AT5G60270.1 52.055 73 33 2 3 75 488 558 2.44e-18 78.2
MsaG026494 AT5G01540.1 54.412 68 27 1 8 75 518 581 2.56e-18 78.2
MsaG026494 AT2G43690.2 46.479 71 37 1 8 77 449 519 4.52e-18 77.4
MsaG026494 AT2G43690.1 46.479 71 37 1 8 77 485 555 4.54e-18 77.4
MsaG026494 AT2G43690.3 46.479 71 37 1 8 77 485 555 4.54e-18 77.4
MsaG026494 AT5G60300.3 51.471 68 32 1 8 75 492 558 4.62e-18 77.4
MsaG026494 AT5G01560.1 61.818 55 21 0 8 62 515 569 5.16e-18 77.4
MsaG026494 AT5G60300.1 51.471 68 32 1 8 75 492 558 5.49e-18 77.4
MsaG026494 AT5G60300.2 51.471 68 32 1 8 75 492 558 5.49e-18 77.4
MsaG026494 AT3G45440.2 51.471 68 32 1 8 75 543 609 8.50e-18 76.6
MsaG026494 AT3G45440.3 51.471 68 32 1 8 75 490 556 1.03e-17 76.6
MsaG026494 AT3G45440.4 51.471 68 32 1 8 75 490 556 1.03e-17 76.6
MsaG026494 AT3G45440.1 51.471 68 32 1 8 75 490 556 1.03e-17 76.6
MsaG026494 AT3G45430.2 52.941 68 31 1 8 75 492 558 1.74e-17 75.9
MsaG026494 AT3G45430.3 52.941 68 31 1 8 75 492 558 1.74e-17 75.9
MsaG026494 AT3G45430.1 52.941 68 31 1 8 75 492 558 1.74e-17 75.9
MsaG026494 AT4G28350.1 67.391 46 15 0 16 61 508 553 1.08e-16 73.6
MsaG026494 AT5G55830.1 46.377 69 36 1 8 75 517 585 4.55e-16 71.6
MsaG026494 AT3G53380.1 59.615 52 21 0 10 61 526 577 1.72e-15 70.1
MsaG026494 AT3G45390.1 48.000 75 38 1 1 75 476 549 2.12e-15 69.7
MsaG026494 AT5G60310.1 44.118 68 37 1 8 75 491 557 2.54e-15 69.7
MsaG026494 AT3G45330.1 50.000 66 32 1 10 75 498 562 1.20e-14 67.8
MsaG026494 AT5G60320.1 46.970 66 34 1 10 75 498 562 2.54e-14 67.0
MsaG026494 AT3G45420.1 47.945 73 36 2 3 75 494 564 5.94e-14 65.9
MsaG026494 AT3G45410.1 54.237 59 25 2 3 61 486 542 6.11e-14 65.9
MsaG026494 AT3G59110.1 39.744 78 47 0 8 85 340 417 1.84e-13 64.3
MsaG026494 AT5G03140.1 56.863 51 22 0 10 60 523 573 2.78e-13 63.9
MsaG026494 AT1G31420.1 42.647 68 39 0 8 75 454 521 3.09e-13 63.5
MsaG026494 AT1G31420.3 42.647 68 39 0 8 75 454 521 3.09e-13 63.5
MsaG026494 AT1G31420.2 42.647 68 39 0 8 75 453 520 3.21e-13 63.5
MsaG026494 AT2G42960.3 39.744 78 47 0 8 85 333 410 4.59e-13 63.2
MsaG026494 AT2G42960.5 39.744 78 47 0 8 85 333 410 4.59e-13 63.2
MsaG026494 AT2G42960.4 39.744 78 47 0 8 85 333 410 4.59e-13 63.2
MsaG026494 AT2G42960.1 39.744 78 47 0 8 85 333 410 4.59e-13 63.2
MsaG026494 AT1G54820.2 48.276 58 30 0 17 74 315 372 6.13e-13 62.8
MsaG026494 AT1G54820.1 48.276 58 30 0 17 74 315 372 6.28e-13 62.8
MsaG026494 AT1G56720.3 40.541 74 44 0 12 85 333 406 6.65e-13 62.8
MsaG026494 AT1G56720.1 40.541 74 44 0 12 85 333 406 6.65e-13 62.8
MsaG026494 AT1G56720.2 40.541 74 44 0 12 85 333 406 6.65e-13 62.8
MsaG026494 AT1G56720.4 40.541 74 44 0 12 85 333 406 6.65e-13 62.8
MsaG026494 AT3G24550.1 48.276 58 30 0 17 74 437 494 7.55e-13 62.8
MsaG026494 AT5G62710.2 42.466 73 41 1 3 75 424 495 8.50e-13 62.4
MsaG026494 AT5G62710.1 42.466 73 41 1 3 75 458 529 8.53e-13 62.4
MsaG026494 AT5G10530.1 46.429 56 30 0 8 63 483 538 1.28e-12 62.0
MsaG026494 AT1G01540.2 40.000 70 42 0 16 85 312 381 1.30e-12 62.0
MsaG026494 AT1G52290.2 44.262 61 33 1 17 76 300 360 1.32e-12 62.0
MsaG026494 AT3G24540.1 46.552 58 31 0 17 74 340 397 1.47e-12 61.6
MsaG026494 AT1G09440.1 40.541 74 44 0 12 85 311 384 2.03e-12 61.2
MsaG026494 AT1G09440.2 40.541 74 44 0 12 85 311 384 2.03e-12 61.2
MsaG026494 AT4G01330.3 34.940 83 53 1 3 85 308 389 2.06e-12 61.2
MsaG026494 AT1G66150.1 40.299 67 40 0 8 74 741 807 2.34e-12 61.2
MsaG026494 AT3G18810.1 47.273 55 28 1 17 70 494 548 2.37e-12 61.2
MsaG026494 AT4G01330.1 38.571 70 43 0 16 85 320 389 3.16e-12 60.8
MsaG026494 AT4G01330.2 38.571 70 43 0 16 85 320 389 3.19e-12 60.8
MsaG026494 AT1G68690.1 52.174 46 22 0 17 62 533 578 3.47e-12 60.8
MsaG026494 AT1G68690.3 52.174 46 22 0 17 62 533 578 3.47e-12 60.8
MsaG026494 AT1G68690.2 52.174 46 22 0 17 62 533 578 3.47e-12 60.8
MsaG026494 AT1G10620.1 51.786 56 25 2 17 70 527 582 3.79e-12 60.5
MsaG026494 AT1G68690.4 52.174 46 22 0 17 62 533 578 3.93e-12 60.5
MsaG026494 AT1G78530.2 41.176 68 40 0 8 75 221 288 4.01e-12 60.1
MsaG026494 AT1G78530.1 38.462 78 45 1 8 85 221 295 4.26e-12 60.5
MsaG026494 AT2G29220.1 40.299 67 34 1 9 75 496 556 5.35e-12 60.1
MsaG026494 AT2G18470.4 44.068 59 32 1 17 75 441 498 6.37e-12 60.1
MsaG026494 AT5G16000.1 43.478 69 38 1 8 75 459 527 7.03e-12 59.7
MsaG026494 AT1G70450.1 53.333 45 21 0 17 61 207 251 7.75e-12 59.7
MsaG026494 AT5G65530.1 41.176 68 40 0 3 70 289 356 7.86e-12 59.7
MsaG026494 AT2G29250.1 41.791 67 33 1 9 75 495 555 1.05e-11 59.3
MsaG026494 AT1G26150.1 52.174 46 22 0 17 62 587 632 1.19e-11 59.3
MsaG026494 AT1G70460.1 53.333 45 21 0 17 61 510 554 1.35e-11 58.9
MsaG026494 AT1G23540.1 53.333 45 21 0 17 61 528 572 1.36e-11 58.9
MsaG026494 AT1G49270.1 49.091 55 27 1 17 70 494 548 1.50e-11 58.9
MsaG026494 AT2G35620.3 39.706 68 41 0 8 75 451 518 1.56e-11 58.9
MsaG026494 AT2G35620.1 39.706 68 41 0 8 75 451 518 1.56e-11 58.9
MsaG026494 AT2G35620.2 39.706 68 41 0 8 75 451 518 1.56e-11 58.9
MsaG026494 AT2G35620.4 39.706 68 41 0 8 75 451 518 1.56e-11 58.9
MsaG026494 AT1G26150.2 44.068 59 33 0 17 75 587 645 1.60e-11 58.9
MsaG026494 AT1G61370.2 46.154 65 33 1 10 74 504 566 1.78e-11 58.9
MsaG026494 AT1G61370.1 46.154 65 33 1 10 74 655 717 1.80e-11 58.9
MsaG026494 AT1G61860.1 42.857 63 36 0 12 74 241 303 2.38e-11 58.2
MsaG026494 AT5G42120.1 45.070 71 32 2 8 75 524 590 2.49e-11 58.2
MsaG026494 AT2G18470.1 44.828 58 31 1 17 74 441 497 2.65e-11 58.2
MsaG026494 AT2G18470.3 44.828 58 31 1 17 74 441 497 2.65e-11 58.2
MsaG026494 AT2G18470.2 44.828 58 31 1 17 74 441 497 2.65e-11 58.2
MsaG026494 AT1G52290.1 44.068 59 32 1 17 74 300 358 2.88e-11 58.2
MsaG026494 AT4G34440.2 49.091 55 27 1 17 70 469 523 2.93e-11 58.2
MsaG026494 AT4G34440.1 49.091 55 27 1 17 70 469 523 2.93e-11 58.2
MsaG026494 AT3G17410.2 55.556 45 20 0 17 61 233 277 3.07e-11 58.2
MsaG026494 AT3G17410.1 55.556 45 20 0 17 61 233 277 3.07e-11 58.2
MsaG026494 AT3G07070.1 46.552 58 31 0 17 74 240 297 3.26e-11 57.8
MsaG026494 AT2G47060.5 42.373 59 34 0 17 75 237 295 3.28e-11 57.8
MsaG026494 AT2G11520.1 45.614 57 31 0 18 74 386 442 3.43e-11 57.8
MsaG026494 AT3G62220.2 53.333 45 21 0 17 61 140 184 3.48e-11 57.4
MsaG026494 AT4G02630.1 42.373 59 34 0 17 75 322 380 3.55e-11 57.8
MsaG026494 AT1G21590.2 39.437 71 41 1 3 71 514 584 3.75e-11 57.8
MsaG026494 AT1G21590.1 39.437 71 41 1 3 71 554 624 3.76e-11 57.8
MsaG026494 AT4G11460.2 44.643 56 31 0 3 58 416 471 4.23e-11 57.8
MsaG026494 AT4G11460.3 44.643 56 31 0 3 58 491 546 4.26e-11 57.8
MsaG026494 AT4G11460.1 44.643 56 31 0 3 58 494 549 4.26e-11 57.8
MsaG026494 AT3G46760.1 48.214 56 29 0 20 75 201 256 4.49e-11 57.4
MsaG026494 AT2G01820.1 38.028 71 44 0 18 88 748 818 4.49e-11 57.8
MsaG026494 AT3G25560.3 40.506 79 46 1 8 85 459 537 4.81e-11 57.4
MsaG026494 AT3G23750.1 42.857 63 36 0 12 74 735 797 4.85e-11 57.4
MsaG026494 AT3G55450.2 44.828 58 32 0 17 74 268 325 5.08e-11 57.4
MsaG026494 AT3G25560.1 40.506 79 46 1 8 85 459 537 5.30e-11 57.4
MsaG026494 AT3G25560.2 40.506 79 46 1 8 85 460 538 5.30e-11 57.4
MsaG026494 AT5G65240.1 42.623 61 33 1 17 75 444 504 5.71e-11 57.4
MsaG026494 AT5G65240.2 42.623 61 33 1 17 75 444 504 5.73e-11 57.4
MsaG026494 AT3G20530.2 42.188 64 37 0 12 75 239 302 5.97e-11 57.0
MsaG026494 AT5G10290.1 42.623 61 33 1 17 75 450 510 6.00e-11 57.4
MsaG026494 AT5G10290.2 42.623 61 33 1 17 75 450 510 6.00e-11 57.4
MsaG026494 AT1G62950.1 39.655 58 35 0 18 75 771 828 6.00e-11 57.4
MsaG026494 AT3G55450.1 44.828 58 32 0 17 74 231 288 6.14e-11 57.0
MsaG026494 AT1G48210.5 53.333 45 21 0 17 61 232 276 6.75e-11 57.0
MsaG026494 AT1G48210.4 53.333 45 21 0 17 61 232 276 6.75e-11 57.0
MsaG026494 AT1G48210.6 53.333 45 21 0 17 61 232 276 6.75e-11 57.0
MsaG026494 AT3G62220.1 53.333 45 21 0 17 61 233 277 6.91e-11 57.0
MsaG026494 AT3G62220.3 53.333 45 21 0 17 61 233 277 6.91e-11 57.0
MsaG026494 AT2G47060.6 48.936 47 24 0 17 63 119 165 7.02e-11 56.6
MsaG026494 AT2G47060.4 48.936 47 24 0 17 63 237 283 7.07e-11 57.0
MsaG026494 AT2G47060.2 48.936 47 24 0 17 63 237 283 7.28e-11 57.0
MsaG026494 AT2G47060.1 48.936 47 24 0 17 63 237 283 7.28e-11 57.0
MsaG026494 AT2G20300.1 48.000 50 26 0 12 61 498 547 7.59e-11 57.0
MsaG026494 AT2G47060.3 48.936 47 24 0 17 63 138 184 8.27e-11 56.6
MsaG026494 AT4G34500.1 44.828 58 32 0 17 74 306 363 8.37e-11 56.6
MsaG026494 AT5G57670.2 44.828 58 32 0 3 60 412 469 9.92e-11 56.6

Find 30 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGATGCTCTTCCTGTTCT+AGG 0.221215 5:+23242654 None:intergenic
GGTGGGAACCTTAGGCTATT+TGG 0.246912 5:-23242688 MsaT026494.1:CDS
TGGTGTTGGTGGATTATATT+GGG 0.360565 5:-23242542 MsaT026494.1:CDS
TTCTGCTTGAGGTTGCTTGT+GGG 0.368531 5:-23242602 MsaT026494.1:CDS
TTGGTGTTGGTGGATTATAT+TGG 0.385876 5:-23242543 MsaT026494.1:CDS
CCCACCACTCTTGTGGTCGC+TGG 0.402585 5:+23242705 None:intergenic
GCACCGGAGTTGCCTAGAAC+AGG 0.425900 5:-23242666 MsaT026494.1:CDS
TTGGTGGATTATATTGGGTG+TGG 0.443610 5:-23242537 MsaT026494.1:CDS
GAGAAGGCCTATCGAGTCTA+AGG 0.448240 5:-23242580 MsaT026494.1:CDS
CTTCTGCTTGAGGTTGCTTG+TGG 0.454996 5:-23242603 MsaT026494.1:CDS
ACAAGAGTGGTGGGAACCTT+AGG 0.456410 5:-23242696 MsaT026494.1:CDS
GATTATATTGGGTGTGGGAA+AGG 0.469457 5:-23242531 MsaT026494.1:CDS
TTGAGGTTGCTTGTGGGAGA+AGG 0.474358 5:-23242596 MsaT026494.1:CDS
ACAAGAAGCGTTGGTGTTGG+TGG 0.493755 5:-23242553 MsaT026494.1:CDS
ATTTGGTGCACTTCTGCTTG+AGG 0.507190 5:-23242613 MsaT026494.1:CDS
TGGTGGATTATATTGGGTGT+GGG 0.516832 5:-23242536 MsaT026494.1:CDS
AACCTTAGGCTATTTGGCAC+CGG 0.530140 5:-23242682 MsaT026494.1:CDS
AGGAAGAATACGCGAAGTAG+TGG 0.551536 5:-23242500 None:intergenic
CTCCGGTGCCAAATAGCCTA+AGG 0.558046 5:+23242680 None:intergenic
ATTACAAGAAGCGTTGGTGT+TGG 0.567677 5:-23242556 MsaT026494.1:CDS
TAAGGTTCCCACCACTCTTG+TGG 0.579434 5:+23242698 None:intergenic
TCCAGCGACCACAAGAGTGG+TGG 0.580553 5:-23242706 MsaT026494.1:CDS
TAAGGCATTACAAGAAGCGT+TGG 0.584842 5:-23242562 MsaT026494.1:CDS
CTTCCTGTTCTAGGCAACTC+CGG 0.587316 5:+23242663 None:intergenic
TGTAATGCCTTAGACTCGAT+AGG 0.605917 5:+23242573 None:intergenic
CTAGCAAGGTTATATGAACA+TGG 0.612331 5:-23242735 MsaT026494.1:intron
GTGTGGGAAAGGTACAAAGA+AGG 0.619164 5:-23242520 MsaT026494.1:CDS
ACATGAAGGCTATGAGCAAG+TGG 0.620992 5:-23242827 MsaT026494.1:intron
CCAGCGACCACAAGAGTGGT+GGG 0.624826 5:-23242705 MsaT026494.1:CDS
TAATCCAGCGACCACAAGAG+TGG 0.644463 5:-23242709 MsaT026494.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 23242503 23242847 23242503 ID=MsaG026494
Chr5 mRNA 23242503 23242847 23242503 ID=MsaT026494.1;Parent=MsaG026494
Chr5 exon 23242503 23242749 23242503 ID=MsaT026494.1.exon2;Parent=MsaT026494.1
Chr5 CDS 23242503 23242749 23242503 ID=cds.MsaT026494.1;Parent=MsaT026494.1
Chr5 exon 23242828 23242847 23242828 ID=MsaT026494.1.exon1;Parent=MsaT026494.1
Chr5 CDS 23242828 23242847 23242828 ID=cds.MsaT026494.1;Parent=MsaT026494.1
Gene Sequence

>MsaT026494.1

ATGAAGGCTATGAGCAAGTGGTTATATGAACATGGTGCTAATCCAGCGACCACAAGAGTGGTGGGAACCTTAGGCTATTTGGCACCGGAGTTGCCTAGAACAGGAAGAGCATCTACGAATTCAGACGTTTTTGCATTTGGTGCACTTCTGCTTGAGGTTGCTTGTGGGAGAAGGCCTATCGAGTCTAAGGCATTACAAGAAGCGTTGGTGTTGGTGGATTATATTGGGTGTGGGAAAGGTACAAAGAAGGAAGAATACGCGAAGTAG
Protein sequence

>MsaT026494.1

MKAMSKWLYEHGANPATTRVVGTLGYLAPELPRTGRASTNSDVFAFGALLLEVACGRRPIESKALQEALVLVDYIGCGKGTKKEEYAK*