AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG026655

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG026655 MtrunA17_Chr5g0419601 90.295 237 23 0 1 237 1 237 2.12e-150 418
MsaG026655 MtrunA17_Chr5g0422941 75.949 237 57 0 1 237 1 237 6.30e-133 374
MsaG026655 MtrunA17_Chr2g0317451 75.847 236 57 0 1 236 1 236 7.92e-132 371
MsaG026655 MtrunA17_Chr2g0317481 75.847 236 57 0 1 236 1 236 2.82e-131 370
MsaG026655 MtrunA17_Chr5g0422421 75.109 229 57 0 1 229 1 229 1.01e-120 343
MsaG026655 MtrunA17_Chr8g0355091 66.667 237 79 0 1 237 1 237 1.36e-113 325
MsaG026655 MtrunA17_Chr1g0187361 69.778 225 68 0 1 225 1 225 3.25e-110 316
MsaG026655 MtrunA17_Chr1g0188671 67.111 225 74 0 1 225 39 263 2.31e-106 308
MsaG026655 MtrunA17_Chr1g0206721 67.568 222 72 0 1 222 1 222 1.94e-104 301
MsaG026655 MtrunA17_Chr2g0292791 67.089 237 78 0 1 237 1 237 2.45e-103 299
MsaG026655 MtrunA17_Chr1g0206701 64.000 225 81 0 1 225 1 225 1.16e-102 297
MsaG026655 MtrunA17_Chr1g0149391 66.667 237 79 0 1 237 1 237 2.38e-100 291
MsaG026655 MtrunA17_Chr3g0099421 64.414 222 79 0 1 222 26 247 2.07e-97 285
MsaG026655 MtrunA17_Chr1g0206691 61.364 220 85 0 18 237 1 220 1.21e-94 276
MsaG026655 MtrunA17_Chr3g0089141 61.277 235 73 3 1 225 1 227 2.71e-94 276
MsaG026655 MtrunA17_Chr1g0208561 61.277 235 73 3 1 225 1 227 8.82e-94 274
MsaG026655 MtrunA17_Chr2g0300441 58.650 237 97 1 1 237 1 236 1.83e-92 271
MsaG026655 MtrunA17_Chr2g0325971 60.426 235 75 3 1 225 1 227 9.09e-92 269
MsaG026655 MtrunA17_Chr1g0208581 56.904 239 86 3 1 237 1 224 1.74e-85 253
MsaG026655 MtrunA17_Chr3g0099411 58.904 219 71 1 1 219 1 200 4.59e-85 252
MsaG026655 MtrunA17_Chr1g0206991 66.298 181 61 0 1 181 1 181 8.35e-82 242
MsaG026655 MtrunA17_Chr7g0238991 51.695 236 112 2 3 237 14 248 6.01e-76 230
MsaG026655 MtrunA17_Chr3g0085241 43.915 189 96 1 3 191 35 213 4.39e-54 174
MsaG026655 MtrunA17_Chr3g0119901 46.067 178 96 0 1 178 1 178 5.98e-54 172
MsaG026655 MtrunA17_Chr2g0300421 62.143 140 53 0 1 140 1 140 3.84e-52 167
MsaG026655 MtrunA17_Chr3g0089151 63.710 124 45 0 1 124 1 124 6.58e-51 162
MsaG026655 MtrunA17_Chr3g0111931 69.444 108 33 0 21 128 2 109 5.36e-47 151
MsaG026655 MtrunA17_Chr1g0187351 81.818 66 12 0 18 83 1 66 3.44e-33 115
MsaG026655 MtrunA17_Chr3g0111841 89.831 59 6 0 15 73 2 60 1.44e-30 108
MsaG026655 MtrunA17_Chr8g0379021 34.969 163 102 1 5 167 8 166 1.37e-27 103
MsaG026655 MtrunA17_Chr4g0018951 38.710 155 83 2 5 159 8 150 4.08e-27 102
MsaG026655 MtrunA17_Chr2g0333981 33.333 165 106 1 5 169 8 168 3.08e-26 100
MsaG026655 MtrunA17_Chr3g0111831 72.131 61 17 0 16 76 11 71 2.77e-23 89.7
MsaG026655 MtrunA17_Chr4g0074101 31.461 178 97 3 9 171 2 169 3.17e-22 90.5
MsaG026655 MtrunA17_Chr1g0180591 33.333 165 94 3 9 171 2 152 6.05e-21 86.7
MsaG026655 MtrunA17_Chr1g0169761 50.649 77 38 0 9 85 2 78 1.05e-20 85.9
MsaG026655 MtrunA17_Chr8g0376821 53.521 71 33 0 9 79 2 72 1.96e-20 85.1
MsaG026655 MtrunA17_Chr8g0357771 39.062 128 69 3 9 131 2 125 6.82e-20 84.0
MsaG026655 MtrunA17_Chr1g0175601 30.675 163 101 2 9 171 2 152 2.51e-19 82.4
MsaG026655 MtrunA17_Chr4g0071601 31.492 181 110 3 5 175 8 184 5.88e-19 81.6
MsaG026655 MtrunA17_Chr1g0175611 46.835 79 42 0 9 87 2 80 1.25e-18 80.1
MsaG026655 MtrunA17_Chr8g0356071 33.566 143 85 3 9 147 2 138 4.88e-18 78.6
MsaG026655 MtrunA17_Chr4g0052061 38.596 114 67 2 9 121 2 113 1.49e-17 77.0
MsaG026655 MtrunA17_Chr8g0345001 33.750 160 85 5 10 159 19 167 1.10e-16 75.5
MsaG026655 MtrunA17_Chr3g0077501 51.471 68 33 0 9 76 2 69 1.36e-16 75.9
MsaG026655 MtrunA17_Chr4g0052081 52.174 69 33 0 9 77 2 70 4.94e-16 73.6
MsaG026655 MtrunA17_Chr3g0097101 47.297 74 39 0 3 76 11 84 6.45e-16 74.3
MsaG026655 MtrunA17_Chr4g0049901 53.030 66 31 0 10 75 29 94 9.94e-16 73.9
MsaG026655 MtrunA17_Chr8g0351051 49.367 79 38 1 9 85 2 80 2.01e-15 73.2
MsaG026655 MtrunA17_Chr4g0057151 47.945 73 38 0 10 82 3 75 2.03e-15 72.4
MsaG026655 MtrunA17_Chr5g0427401 50.000 68 34 0 9 76 2 69 2.42e-15 72.4
MsaG026655 MtrunA17_Chr4g0061691 50.725 69 33 1 9 76 2 70 5.75e-15 71.6
MsaG026655 MtrunA17_Chr8g0380021 50.000 68 34 0 9 76 18 85 7.23e-15 71.6
MsaG026655 MtrunA17_Chr6g0474371 50.725 69 33 1 9 76 2 70 8.82e-15 70.5
MsaG026655 MtrunA17_Chr2g0279821 45.333 75 41 0 9 83 2 76 1.52e-14 70.5
MsaG026655 MtrunA17_Chr2g0284911 50.000 68 34 0 9 76 17 84 1.70e-14 70.9
MsaG026655 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 2.91e-14 69.7
MsaG026655 MtrunA17_Chr4g0020221 51.471 68 33 0 9 76 2 69 3.38e-14 70.1
MsaG026655 MtrunA17_Chr8g0351041 44.304 79 44 0 10 88 3 81 3.53e-14 68.2
MsaG026655 MtrunA17_Chr7g0246431 50.746 67 33 0 10 76 3 69 3.79e-14 68.9
MsaG026655 MtrunA17_Chr1g0204111 51.471 68 33 0 9 76 18 85 5.60e-14 69.3
MsaG026655 MtrunA17_Chr1g0173161 61.111 54 21 0 9 62 2 55 5.70e-14 65.5
MsaG026655 MtrunA17_Chr1g0159661 37.398 123 52 3 9 131 2 99 5.91e-14 67.8
MsaG026655 MtrunA17_Chr5g0411691 47.059 68 36 0 9 76 2 69 6.71e-14 68.9
MsaG026655 MtrunA17_Chr5g0412271 48.529 68 35 0 9 76 2 69 7.42e-14 68.6
MsaG026655 MtrunA17_Chr5g0412461 48.529 68 35 0 9 76 2 69 7.62e-14 68.6
MsaG026655 MtrunA17_Chr3g0134451 50.704 71 32 2 9 77 2 71 8.64e-14 69.3
MsaG026655 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 1.22e-13 68.2
MsaG026655 MtrunA17_Chr1g0164791 33.333 156 70 5 9 130 2 157 1.33e-13 67.8
MsaG026655 MtrunA17_Chr8g0351031 47.826 69 36 0 10 78 3 71 1.64e-13 67.4
MsaG026655 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 1.92e-13 67.8
MsaG026655 MtrunA17_Chr4g0025531 34.868 152 78 5 1 147 1 136 2.12e-13 67.4
MsaG026655 MtrunA17_Chr3g0093131 30.986 142 83 4 26 159 36 170 2.24e-13 66.6
MsaG026655 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 2.75e-13 67.0
MsaG026655 MtrunA17_Chr8g0366231 46.377 69 36 1 9 76 2 70 3.38e-13 67.0
MsaG026655 MtrunA17_Chr5g0425191 55.556 54 24 0 8 61 1 54 3.60e-13 63.9
MsaG026655 MtrunA17_Chr7g0220121 44.444 72 39 1 9 79 2 73 4.32e-13 67.0
MsaG026655 MtrunA17_Chr5g0420081 46.377 69 36 1 9 76 2 70 9.76e-13 65.5
MsaG026655 MtrunA17_Chr3g0125241 45.714 70 36 1 9 76 27 96 9.97e-13 65.1
MsaG026655 MtrunA17_Chr2g0308251 55.556 54 24 0 9 62 2 55 1.01e-12 62.0
MsaG026655 MtrunA17_Chr7g0246381 56.604 53 23 0 9 61 2 54 1.48e-12 61.2
MsaG026655 MtrunA17_Chr8g0377561 55.556 54 24 0 9 62 2 55 1.69e-12 62.0
MsaG026655 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 1.99e-12 64.3
MsaG026655 MtrunA17_Chr4g0044071 54.717 53 24 0 9 61 2 54 2.12e-12 62.0
MsaG026655 MtrunA17_Chr5g0427921 50.000 54 27 0 9 62 2 55 3.50e-12 60.1
MsaG026655 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 5.19e-12 63.5
MsaG026655 MtrunA17_Chr4g0061671 53.704 54 25 0 9 62 2 55 5.88e-12 62.4
MsaG026655 MtrunA17_Chr3g0122251 53.704 54 25 0 9 62 2 55 1.63e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG026655 AT5G60440.1 48.187 193 90 5 5 193 3 189 4.35e-50 166
MsaG026655 AT1G01530.1 42.857 189 98 4 4 191 2 181 3.02e-39 136
MsaG026655 AT1G65360.1 38.298 235 124 5 5 230 3 225 5.61e-38 132
MsaG026655 AT2G24840.1 46.875 160 76 4 9 163 63 218 1.14e-37 132
MsaG026655 AT4G36590.1 42.073 164 85 3 5 160 3 164 2.16e-31 116
MsaG026655 AT3G04100.1 30.052 193 127 3 2 186 7 199 6.27e-25 98.2
MsaG026655 AT1G28460.1 35.000 140 88 1 5 141 4 143 1.13e-19 83.6
MsaG026655 AT1G72350.1 54.795 73 31 1 9 81 43 113 1.38e-19 84.3
MsaG026655 AT2G34440.1 31.757 148 99 2 9 156 2 147 2.12e-19 82.8
MsaG026655 AT3G66656.1 36.134 119 72 1 9 123 2 120 1.37e-18 80.5
MsaG026655 AT2G45650.1 54.412 68 31 0 9 76 2 69 6.64e-17 77.8
MsaG026655 AT5G51870.5 37.795 127 59 3 5 123 21 135 1.67e-16 75.5
MsaG026655 AT2G45660.2 52.941 68 32 0 10 77 3 70 2.27e-16 74.3
MsaG026655 AT1G29962.1 31.288 163 103 4 5 161 4 163 3.07e-16 74.7
MsaG026655 AT2G45660.1 52.941 68 32 0 10 77 3 70 5.54e-16 74.3
MsaG026655 AT4G09960.2 50.000 68 34 0 9 76 2 69 6.35e-16 74.3
MsaG026655 AT4G09960.1 50.000 68 34 0 9 76 2 69 7.90e-16 74.3
MsaG026655 AT4G09960.6 50.000 68 34 0 9 76 3 70 7.94e-16 74.3
MsaG026655 AT4G09960.5 50.000 68 34 0 9 76 12 79 9.77e-16 74.3
MsaG026655 AT5G51870.2 37.705 122 56 3 10 123 3 112 1.02e-15 72.8
MsaG026655 AT1G28450.1 32.168 143 91 3 5 141 4 146 1.10e-15 73.2
MsaG026655 AT4G09960.3 50.000 68 34 0 9 76 28 95 1.26e-15 74.3
MsaG026655 AT5G10140.2 49.275 69 34 1 9 76 2 70 1.33e-15 72.4
MsaG026655 AT4G22950.2 46.575 73 39 0 10 82 3 75 1.39e-15 72.4
MsaG026655 AT5G51870.1 55.224 67 30 0 10 76 3 69 1.81e-15 72.8
MsaG026655 AT5G51870.3 54.286 70 32 0 7 76 10 79 1.98e-15 73.2
MsaG026655 AT5G10140.4 49.275 69 34 1 9 76 2 70 2.13e-15 72.4
MsaG026655 AT5G10140.1 49.275 69 34 1 9 76 2 70 2.48e-15 72.4
MsaG026655 AT5G10140.3 49.275 69 34 1 9 76 2 70 2.55e-15 72.0
MsaG026655 AT4G09960.4 50.000 68 34 0 9 76 97 164 2.74e-15 74.3
MsaG026655 AT5G51870.4 55.224 67 30 0 10 76 3 69 3.20e-15 72.4
MsaG026655 AT4G22950.3 47.887 71 37 0 10 80 3 73 3.58e-15 72.4
MsaG026655 AT4G22950.1 47.887 71 37 0 10 80 3 73 3.58e-15 72.4
MsaG026655 AT3G57230.2 47.059 68 36 0 9 76 2 69 5.74e-15 70.1
MsaG026655 AT4G18960.1 48.000 75 39 0 2 76 11 85 7.35e-15 72.0
MsaG026655 AT5G62165.14 49.254 67 34 0 10 76 3 69 1.10e-14 68.2
MsaG026655 AT2G42830.1 46.053 76 41 0 1 76 9 84 1.10e-14 71.6
MsaG026655 AT3G57390.3 51.471 68 33 0 9 76 2 69 1.17e-14 71.2
MsaG026655 AT2G42830.2 46.053 76 41 0 1 76 9 84 1.20e-14 71.6
MsaG026655 AT3G58780.1 49.296 71 36 0 6 76 14 84 1.21e-14 71.2
MsaG026655 AT3G58780.5 49.296 71 36 0 6 76 20 90 1.35e-14 71.2
MsaG026655 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.40e-14 69.7
MsaG026655 AT4G37940.4 48.529 68 35 0 9 76 2 69 1.42e-14 70.5
MsaG026655 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.71e-14 70.9
MsaG026655 AT5G13790.1 51.471 68 33 0 9 76 2 69 1.76e-14 71.2
MsaG026655 AT3G57230.1 47.059 68 36 0 9 76 2 69 1.87e-14 70.9
MsaG026655 AT3G57230.4 47.059 68 36 0 9 76 2 69 1.87e-14 70.9
MsaG026655 AT5G13790.2 51.471 68 33 0 9 76 2 69 1.89e-14 71.2
MsaG026655 AT2G22540.3 50.000 68 34 0 9 76 2 69 1.97e-14 70.9
MsaG026655 AT2G22540.1 50.000 68 34 0 9 76 2 69 1.97e-14 70.9
MsaG026655 AT5G62165.17 49.254 67 34 0 10 76 3 69 2.12e-14 68.9
MsaG026655 AT5G62165.12 49.254 67 34 0 10 76 3 69 2.12e-14 68.9
MsaG026655 AT5G62165.11 49.254 67 34 0 10 76 3 69 2.12e-14 68.9
MsaG026655 AT5G65050.2 46.377 69 36 1 9 76 2 70 2.40e-14 69.3
MsaG026655 AT3G57390.1 51.471 68 33 0 9 76 2 69 2.49e-14 70.9
MsaG026655 AT5G62165.6 49.254 67 34 0 10 76 3 69 2.57e-14 68.6
MsaG026655 AT5G62165.9 49.254 67 34 0 10 76 3 69 2.57e-14 68.6
MsaG026655 AT5G62165.7 49.254 67 34 0 10 76 3 69 2.57e-14 68.6
MsaG026655 AT5G62165.8 49.254 67 34 0 10 76 3 69 2.57e-14 68.6
MsaG026655 AT5G62165.13 49.254 67 34 0 10 76 3 69 2.57e-14 68.6
MsaG026655 AT3G58780.4 49.296 71 36 0 6 76 14 84 2.80e-14 70.9
MsaG026655 AT1G77980.1 50.000 72 33 2 9 78 2 72 2.90e-14 71.2
MsaG026655 AT4G24540.1 50.000 68 34 0 9 76 2 69 3.80e-14 69.7
MsaG026655 AT5G65050.5 46.377 69 36 1 9 76 2 70 4.00e-14 68.9
MsaG026655 AT5G23260.1 48.000 75 37 1 5 77 14 88 4.14e-14 70.1
MsaG026655 AT3G54340.1 48.571 70 34 1 9 76 2 71 4.22e-14 69.7
MsaG026655 AT5G23260.4 48.000 75 37 1 5 77 14 88 4.25e-14 70.1
MsaG026655 AT5G65050.3 46.377 69 36 1 9 76 2 70 4.40e-14 68.9
MsaG026655 AT5G65050.1 46.377 69 36 1 9 76 2 70 4.88e-14 68.6
MsaG026655 AT1G77950.3 34.711 121 75 3 9 127 2 120 5.01e-14 69.7
MsaG026655 AT1G77950.2 34.711 121 75 3 9 127 2 120 5.01e-14 69.7
MsaG026655 AT1G77950.1 34.711 121 75 3 9 127 2 120 5.01e-14 69.7
MsaG026655 AT1G77950.4 34.711 121 75 3 9 127 2 120 5.01e-14 69.7
MsaG026655 AT5G62165.10 49.254 67 34 0 10 76 3 69 5.23e-14 68.9
MsaG026655 AT5G62165.4 49.254 67 34 0 10 76 3 69 5.23e-14 68.9
MsaG026655 AT1G22130.1 48.750 80 37 3 9 86 2 79 5.38e-14 70.5
MsaG026655 AT5G62165.3 49.254 67 34 0 10 76 3 69 6.21e-14 68.9
MsaG026655 AT5G62165.1 49.254 67 34 0 10 76 3 69 6.21e-14 68.9
MsaG026655 AT5G62165.2 49.254 67 34 0 10 76 3 69 6.21e-14 68.9
MsaG026655 AT5G51860.2 34.177 158 96 2 10 163 3 156 9.51e-14 68.2
MsaG026655 AT3G61120.1 50.000 68 34 0 9 76 2 69 9.87e-14 68.9
MsaG026655 AT3G30260.1 46.377 69 36 1 9 76 2 70 1.07e-13 68.9
MsaG026655 AT5G51860.1 34.177 158 96 2 10 163 3 156 1.17e-13 68.2
MsaG026655 AT2G22630.1 47.059 68 36 0 9 76 2 69 1.38e-13 68.2
MsaG026655 AT2G22630.2 47.059 68 36 0 9 76 2 69 1.38e-13 68.2
MsaG026655 AT5G23260.3 49.296 71 34 1 9 77 2 72 1.40e-13 68.2
MsaG026655 AT5G23260.2 49.296 71 34 1 9 77 2 72 1.57e-13 68.6
MsaG026655 AT5G65060.2 46.377 69 36 1 9 76 2 70 1.61e-13 67.0
MsaG026655 AT5G65060.1 46.377 69 36 1 9 76 2 70 1.73e-13 67.4
MsaG026655 AT5G65060.3 46.377 69 36 1 9 76 2 70 1.89e-13 67.0
MsaG026655 AT1G26310.1 47.826 69 35 1 9 76 2 70 2.37e-13 67.8
MsaG026655 AT5G60910.1 47.826 69 35 1 9 76 2 70 2.85e-13 67.4
MsaG026655 AT1G47760.1 33.043 115 67 2 9 115 2 114 3.57e-13 66.2
MsaG026655 AT2G22540.2 50.000 68 29 1 9 76 2 64 3.63e-13 67.0
MsaG026655 AT4G11880.2 47.222 72 37 1 10 80 3 74 3.65e-13 66.2
MsaG026655 AT4G11880.3 47.222 72 37 1 10 80 3 74 3.65e-13 66.2
MsaG026655 AT2G14210.1 47.826 69 35 1 9 76 2 70 3.91e-13 67.0
MsaG026655 AT2G14210.2 47.826 69 35 1 9 76 2 70 4.74e-13 66.6
MsaG026655 AT5G15800.1 49.275 69 34 1 9 76 2 70 5.11e-13 67.0
MsaG026655 AT4G11880.4 47.222 72 37 1 10 80 3 74 5.63e-13 66.2
MsaG026655 AT4G11880.1 47.222 72 37 1 10 80 3 74 5.63e-13 66.2
MsaG026655 AT5G15800.2 49.275 69 34 1 9 76 2 70 7.36e-13 66.6
MsaG026655 AT1G69120.2 44.928 69 37 1 9 76 2 70 8.68e-13 66.2
MsaG026655 AT5G20240.2 47.143 70 35 1 9 76 2 71 9.96e-13 64.3
MsaG026655 AT1G17310.1 51.351 74 34 1 8 81 47 118 1.00e-12 65.5
MsaG026655 AT1G71692.1 44.286 70 38 1 9 77 2 71 1.09e-12 65.5
MsaG026655 AT1G17310.2 51.351 74 34 1 8 81 58 129 1.43e-12 65.5
MsaG026655 AT1G69120.1 44.928 69 37 1 9 76 2 70 1.48e-12 65.9
MsaG026655 AT5G20240.1 47.143 70 35 1 9 76 2 71 1.51e-12 65.1
MsaG026655 AT5G65070.4 43.478 69 38 1 9 76 2 70 4.19e-12 62.4
MsaG026655 AT3G58780.2 54.386 57 26 0 6 62 14 70 5.23e-12 63.9
MsaG026655 AT3G58780.3 54.386 57 26 0 6 62 14 70 6.62e-12 63.9
MsaG026655 AT5G65070.1 43.478 69 38 1 9 76 2 70 7.94e-12 62.8
MsaG026655 AT2G03710.3 45.714 70 36 2 9 76 2 71 8.50e-12 62.4
MsaG026655 AT3G02310.2 44.928 69 37 1 9 76 2 70 1.08e-11 62.4
MsaG026655 AT1G18750.4 30.556 216 110 13 9 195 2 206 1.09e-11 63.9
MsaG026655 AT1G18750.1 30.556 216 110 13 9 195 2 206 1.13e-11 63.9
MsaG026655 AT1G24260.3 55.556 54 24 0 9 62 2 55 1.26e-11 62.8
MsaG026655 AT2G03710.2 45.714 70 36 1 9 76 2 71 1.26e-11 63.2
MsaG026655 AT1G24260.1 55.556 54 24 0 9 62 2 55 1.30e-11 63.2
MsaG026655 AT2G03710.1 45.714 70 36 2 9 76 2 71 1.31e-11 63.2
MsaG026655 AT1G24260.2 55.556 54 24 0 9 62 2 55 1.35e-11 62.8
MsaG026655 AT5G65070.2 43.478 69 38 1 9 76 2 70 1.37e-11 62.8
MsaG026655 AT5G65080.3 40.260 77 45 1 1 76 1 77 1.54e-11 62.0
MsaG026655 AT5G65070.5 43.478 69 38 1 9 76 2 70 1.59e-11 62.0
MsaG026655 AT3G02310.1 44.928 69 37 1 9 76 2 70 1.93e-11 62.4
MsaG026655 AT1G46408.1 34.127 126 68 4 10 127 5 123 2.21e-11 62.4
MsaG026655 AT5G65080.2 45.161 62 34 0 1 62 1 62 2.78e-11 61.2
MsaG026655 AT2G03060.3 29.885 174 96 8 9 164 2 167 2.88e-11 62.8
MsaG026655 AT2G03060.7 29.885 174 96 8 9 164 2 167 2.88e-11 62.8
MsaG026655 AT2G03060.1 29.885 174 96 8 9 164 2 167 2.88e-11 62.8
MsaG026655 AT2G03060.2 29.885 174 96 8 9 164 2 167 3.00e-11 62.8
MsaG026655 AT5G65070.3 50.909 55 27 0 9 63 2 56 3.89e-11 61.2

Find 60 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTGATAACATTGAAATTC+AGG 0.196230 5:+26299806 MsaT026655.1:CDS
CTTATTTGGCTTCAACAATA+TGG 0.200420 5:+26299965 MsaT026655.1:CDS
ATGTTTCAACCTCACTTATT+TGG 0.211284 5:+26299951 MsaT026655.1:CDS
ATCGCGTGATCTCGTCGTTT+TGG 0.284953 5:-26299557 None:intergenic
TCTATGACCGTTTCAACATT+TGG 0.310111 5:-26299510 None:intergenic
TCCCTTTGATAGGATGAATA+TGG 0.327781 5:+26299725 MsaT026655.1:CDS
GGTGGACTTGTCCCTTTGAT+AGG 0.330711 5:+26299715 MsaT026655.1:CDS
CTTCCATTTCATGTTGGAAA+TGG 0.331329 5:+26299846 MsaT026655.1:CDS
CTATGACCGTTTCAACATTT+GGG 0.363837 5:-26299509 None:intergenic
GAACCATTTCCAACATGAAA+TGG 0.375054 5:-26299849 None:intergenic
TGGATCATTCAAGAAGGCTT+TGG 0.378658 5:+26299755 MsaT026655.1:CDS
TTATTTGGCTTCAACAATAT+GGG 0.380387 5:+26299966 MsaT026655.1:CDS
AGCGAGCTTTGCACCCTTTG+TGG 0.386397 5:+26299429 MsaT026655.1:CDS
CCTCATTATTCTTTCGCTGT+TGG 0.412952 5:-26299683 None:intergenic
CAACATGAAATGGAAGGGAT+TGG 0.437827 5:-26299839 None:intergenic
ATGCTCAAACTGCATGTTTG+AGG 0.448301 5:-26299874 None:intergenic
ATAAGTGAGGTTGAAACATT+GGG 0.452897 5:-26299947 None:intergenic
GCTGATAACATTGAAATTCA+GGG 0.483862 5:+26299807 MsaT026655.1:CDS
CATAGACCGTTATCTCTCTC+AGG 0.484381 5:+26299527 MsaT026655.1:CDS
GAAGGTGGGCATGGTCCCCA+TGG 0.487450 5:+26299993 MsaT026655.1:CDS
AATAAGTGAGGTTGAAACAT+TGG 0.488497 5:-26299948 None:intergenic
AACATGAAATGGAAGGGATT+GGG 0.490116 5:-26299838 None:intergenic
GTTGGCTCAGCTCATTTGCA+TGG 0.491376 5:-26299665 None:intergenic
ATCATTCAAGAAGGCTTTGG+AGG 0.495610 5:+26299758 MsaT026655.1:CDS
AACAATATGGGAGGAGAAGG+TGG 0.496190 5:+26299978 MsaT026655.1:CDS
GACCATATTCATCCTATCAA+AGG 0.516254 5:-26299727 None:intergenic
AGCAACATATGCACCACAAA+GGG 0.521852 5:-26299442 None:intergenic
AAGGTGGGCATGGTCCCCAT+GGG 0.524166 5:+26299994 MsaT026655.1:CDS
TACATTGACTCGTATGAAAG+AGG 0.527218 5:+26299623 MsaT026655.1:CDS
TGGTCACCCAAATGTTGAAA+CGG 0.531224 5:+26299503 MsaT026655.1:CDS
CAATCCCTTCCATTTCATGT+TGG 0.532436 5:+26299840 MsaT026655.1:CDS
CCTTCTTGAATGATCCAAGT+TGG 0.533724 5:-26299749 None:intergenic
ACCATATTCATCCTATCAAA+GGG 0.536947 5:-26299726 None:intergenic
ATGGGAGGAGAAGGTGGGCA+TGG 0.547684 5:+26299984 MsaT026655.1:CDS
TTCAACAATATGGGAGGAGA+AGG 0.556945 5:+26299975 MsaT026655.1:CDS
AGGATGAATATGGTCCAACT+TGG 0.567940 5:+26299735 MsaT026655.1:CDS
CCAACTTGGATCATTCAAGA+AGG 0.570743 5:+26299749 MsaT026655.1:CDS
CATTTCCAACATGAAATGGA+AGG 0.571593 5:-26299845 None:intergenic
GCTCGGATCAAAAGAACCCA+TGG 0.573893 5:-26300010 None:intergenic
GTGGCACCTGAGAGAGATAA+CGG 0.575928 5:-26299533 None:intergenic
ATTTCCAACATGAAATGGAA+GGG 0.576763 5:-26299844 None:intergenic
ATCATTAAGCTCACGCACAC+TGG 0.588533 5:-26299601 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.591444 5:+26299391 MsaT026655.1:CDS
CTTTCTTGAATAGCCCACTA+CGG 0.597990 5:-26299404 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.601112 5:+26299390 MsaT026655.1:CDS
TTTGGCTTCAACAATATGGG+AGG 0.603260 5:+26299969 MsaT026655.1:CDS
ATTGAAAAGACCTTCTCACT+AGG 0.603331 5:-26299480 None:intergenic
AGAAAGATCGAATCTTGTTG+AGG 0.605809 5:-26299906 None:intergenic
ACAATATGGGAGGAGAAGGT+GGG 0.607591 5:+26299979 MsaT026655.1:CDS
TATATCCTCACCTAGTGAGA+AGG 0.609022 5:+26299470 MsaT026655.1:CDS
CTCGGATCAAAAGAACCCAT+GGG 0.613719 5:-26300009 None:intergenic
TCGAGCGGAAAGAAAACTCA+AGG 0.622335 5:+26299315 MsaT026655.1:CDS
GCTCACGCACACTGGCATGA+CGG 0.625752 5:-26299593 None:intergenic
AAAGACCTTCTCACTAGGTG+AGG 0.635520 5:-26299475 None:intergenic
CCAACAGCGAAAGAATAATG+AGG 0.639394 5:+26299683 MsaT026655.1:CDS
GAGCAACATATGCACCACAA+AGG 0.640810 5:-26299443 None:intergenic
TGTGCTTCAACCATGTCGAG+CGG 0.661849 5:+26299300 None:intergenic
TTGTTGAAGCCAAATAAGTG+AGG 0.672964 5:-26299960 None:intergenic
CGAGATCACGCGATTCATCG+AGG 0.745713 5:+26299566 MsaT026655.1:CDS
TCGGATCAAAAGAACCCATG+GGG 0.747336 5:-26300008 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr5 gene 26299312 26300025 26299312 ID=MsaG026655
Chr5 mRNA 26299312 26300025 26299312 ID=MsaT026655.1;Parent=MsaG026655
Chr5 exon 26299312 26300025 26299312 ID=MsaT026655.1.exon1;Parent=MsaT026655.1
Chr5 CDS 26299312 26300025 26299312 ID=cds.MsaT026655.1;Parent=MsaT026655.1
Gene Sequence

>MsaT026655.1

ATGTCGAGCGGAAAGAAAACTCAAGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAATCTTCAAGTAACTTTCTCGAAGCGCCGTAGTGGGCTATTCAAGAAAGCTAGCGAGCTTTGCACCCTTTGTGGTGCATATGTTGCTCTAATTATATCCTCACCTAGTGAGAAGGTCTTTTCAATTGGTCACCCAAATGTTGAAACGGTCATAGACCGTTATCTCTCTCAGGTGCCACCCCAAAACGACGAGATCACGCGATTCATCGAGGCTTACCGTCATGCCAGTGTGCGTGAGCTTAATGATACATTGACTCGTATGAAAGAGGCACTAGACATTGACAAGAACCATGCAAATGAGCTGAGCCAACAGCGAAAGAATAATGAGGCTCATTTTTGGTGGACTTGTCCCTTTGATAGGATGAATATGGTCCAACTTGGATCATTCAAGAAGGCTTTGGAGGATCTTCAAAAACTCGTTGCACATTATGCTGATAACATTGAAATTCAGGGTACTTCTACCCAATCCCTTCCATTTCATGTTGGAAATGGTTCATCCTCAAACATGCAGTTTGAGCATCAGCAAAATCCTCAACAAGATTCGATCTTTCTAGCACAATTTTTACGGAACCCAATGTTTCAACCTCACTTATTTGGCTTCAACAATATGGGAGGAGAAGGTGGGCATGGTCCCCATGGGTTCTTTTGA
Protein sequence

>MsaT026655.1

MSSGKKTQGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYVALIISSPSEKVFSIGHPNVETVIDRYLSQVPPQNDEITRFIEAYRHASVRELNDTLTRMKEALDIDKNHANELSQQRKNNEAHFWWTCPFDRMNMVQLGSFKKALEDLQKLVAHYADNIEIQGTSTQSLPFHVGNGSSSNMQFEHQQNPQQDSIFLAQFLRNPMFQPHLFGFNNMGGEGGHGPHGFF*