AlfalfaGEDB | MsaG026663

M. sativa ssp. caerulea / MsaG026663

KEGG: K15601
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02373.25

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026663	XP_003615216.2	89.270	699	48	1	1	672	139	837	0.0	1263

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026663	sp\|Q9SSE9\|JMJ25_ARATH	53.579	489	187	4	215	671	415	895	4.12e-160	490
MsaG026663	sp\|Q9SSE9\|JMJ25_ARATH	43.147	197	110	2	1	197	154	348	2.56e-45	177

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026663	tr\|G7KBD9\|G7KBD9_MEDTR	89.270	699	48	1	1	672	139	837	0.0	1263

TFs/TRs:

Gene ID	Type	Classification
MsaG026663	TR	Jumonji

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000798	MsaG026663	0.812331	7.688111e-51	1.390079e-48
MsaG001909	MsaG026663	0.803469	5.783698e-49	8.462666e-47
MsaG006240	MsaG026663	0.806298	1.492029e-49	2.331898e-47
MsaG007990	MsaG026663	0.802029	1.143068e-48	1.618061e-46
MsaG012058	MsaG026663	0.804295	3.902908e-49	5.821239e-47
MsaG013884	MsaG026663	0.813921	3.457938e-51	6.505664e-49
MsaG017119	MsaG026663	0.802905	7.556576e-49	1.091360e-46
MsaG018876	MsaG026663	0.800238	2.646257e-48	3.597063e-46
MsaG019013	MsaG026663	0.815123	1.879198e-51	3.643828e-49
MsaG019118	MsaG026663	0.819383	2.090309e-52	4.523192e-50
MsaG019122	MsaG026663	0.815217	1.791505e-51	3.482229e-49
MsaG020712	MsaG026663	0.800952	1.895493e-48	2.618437e-46
MsaG023689	MsaG026663	0.806217	1.551137e-49	2.419689e-47
MsaG023692	MsaG026663	0.803645	5.320025e-49	7.815824e-47
MsaG026662	MsaG026663	0.884101	5.484161e-71	1.202552e-67
MsaG026663	MsaG044938	0.800034	2.908990e-48	3.936191e-46
MsaG026663	MsaG045060	0.802270	1.020096e-48	1.452000e-46
MsaG026663	MsaG045061	0.821280	7.714817e-53	1.755267e-50
MsaG026663	MsaG045535	0.802651	8.522413e-49	1.223716e-46
MsaG026663	MsaG046018	0.806437	1.394973e-49	2.187451e-47
MsaG026663	MsaG032938	0.813887	3.516444e-51	6.610218e-49
MsaG026663	MsaG030575	0.814016	3.294507e-51	6.212773e-49
MsaG026663	MsaG038283	0.801933	1.195828e-48	1.689095e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026663	MtrunA17_Chr5g0426961	89.270	699	48	1	1	672	139	837	0.0	1263
MsaG026663	MtrunA17_Chr1g0211711	72.448	715	149	6	1	671	342	1052	0.0	1053
MsaG026663	MtrunA17_Chr1g0183311	67.746	741	167	4	2	671	144	883	0.0	978
MsaG026663	MtrunA17_Chr1g0211661	65.474	643	188	3	1	610	224	865	0.0	845
MsaG026663	MtrunA17_Chr1g0211691	65.954	608	154	8	1	558	341	945	0.0	775
MsaG026663	MtrunA17_Chr5g0420361	60.736	652	188	9	71	660	143	788	0.0	759
MsaG026663	MtrunA17_Chr6g0472441	56.968	653	187	12	73	660	87	710	0.0	684
MsaG026663	MtrunA17_Chr2g0289121	46.535	707	294	13	2	667	156	819	0.0	568
MsaG026663	MtrunA17_Chr4g0075261	43.166	739	305	14	2	667	168	864	0.0	556
MsaG026663	MtrunA17_Chr5g0448301	56.274	526	176	6	89	580	126	631	0.0	548
MsaG026663	MtrunA17_Chr1g0192011	34.548	741	365	14	2	668	267	961	6.72e-137	426
MsaG026663	MtrunA17_Chr7g0275771	41.652	569	267	11	1	524	139	687	1.92e-133	415
MsaG026663	MtrunA17_Chr7g0275771	61.176	170	63	1	502	668	756	925	1.90e-60	218
MsaG026663	MtrunA17_Chr2g0289031	53.316	392	152	3	305	667	4	393	2.76e-131	392
MsaG026663	MtrunA17_Chr2g0281051	31.160	767	416	14	2	671	207	958	1.38e-111	358
MsaG026663	MtrunA17_Chr1g0147021	42.026	533	239	13	2	500	870	1366	2.41e-110	365
MsaG026663	MtrunA17_Chr1g0147021	73.529	136	36	0	523	658	1551	1686	7.42e-58	212
MsaG026663	MtrunA17_Chr1g0211701	83.478	115	19	0	556	670	4	118	4.04e-63	206
MsaG026663	MtrunA17_Chr8g0364421	45.312	256	109	3	111	366	3	227	1.42e-62	207
MsaG026663	MtrunA17_Chr2g0289091	61.224	147	47	3	496	632	274	420	1.95e-49	178
MsaG026663	MtrunA17_Chr2g0289091	44.138	145	53	2	380	497	20	163	2.74e-28	118
MsaG026663	MtrunA17_Chr2g0289041	41.148	209	114	4	24	232	2	201	2.56e-44	157
MsaG026663	MtrunA17_Chr4g0048531	34.343	297	157	6	225	490	727	1016	7.87e-44	169
MsaG026663	MtrunA17_Chr4g0048531	52.703	148	66	2	522	666	1132	1278	5.04e-42	164
MsaG026663	MtrunA17_Chr4g0048531	38.323	167	97	3	2	163	260	425	5.33e-29	124
MsaG026663	MtrunA17_Chr8g0361381	43.850	187	74	2	305	464	26	208	2.69e-43	155
MsaG026663	MtrunA17_Chr7g0231061	53.333	165	50	2	370	507	12	176	5.63e-43	154
MsaG026663	MtrunA17_Chr8g0361391	69.474	95	28	1	516	610	44	137	8.39e-40	143
MsaG026663	MtrunA17_Chr8g0364411	53.982	113	51	1	2	114	33	144	1.72e-32	122
MsaG026663	MtrunA17_Chr1g0211671	77.419	62	14	0	609	670	15	76	4.32e-27	106
MsaG026663	MtrunA17_Chr8g0340381	51.163	129	25	2	404	509	36	149	3.40e-21	92.0
MsaG026663	MtrunA17_Chr3g0119761	61.667	60	23	0	450	509	55	114	1.62e-13	68.2
MsaG026663	MtrunA17_Chr2g0289101	32.558	129	81	3	135	262	8	131	2.61e-13	68.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026663	AT1G11950.1	46.562	698	321	9	1	667	192	868	0.0	607
MsaG026663	AT1G11950.3	46.562	698	321	9	1	667	192	868	0.0	607
MsaG026663	AT1G62310.1	45.718	689	318	11	1	651	208	878	0.0	582
MsaG026663	AT1G11950.2	44.057	631	301	9	1	600	192	801	2.50e-169	505
MsaG026663	AT3G07610.1	53.579	489	187	4	215	671	415	895	4.19e-161	490
MsaG026663	AT3G07610.1	43.147	197	110	2	1	197	154	348	2.60e-46	177
MsaG026663	AT3G07610.3	51.772	508	189	5	215	671	415	917	1.83e-154	474
MsaG026663	AT3G07610.3	43.147	197	110	2	1	197	154	348	2.16e-46	177
MsaG026663	AT4G00990.3	39.750	561	278	14	2	526	80	616	1.06e-114	362
MsaG026663	AT4G00990.3	60.177	113	40	2	504	616	671	778	3.40e-34	139
MsaG026663	AT4G00990.2	39.750	561	278	14	2	526	80	616	1.21e-114	362
MsaG026663	AT4G00990.2	63.810	105	33	2	504	608	671	770	2.36e-33	137
MsaG026663	AT4G00990.1	39.750	561	278	14	2	526	80	616	3.36e-114	363
MsaG026663	AT4G00990.1	60.976	164	59	2	504	667	671	829	2.10e-56	206
MsaG026663	AT1G09060.2	30.884	735	393	16	1	668	205	891	3.36e-107	346
MsaG026663	AT1G09060.1	30.884	735	393	16	1	668	205	891	3.36e-107	346
MsaG026663	AT1G09060.4	30.884	735	393	16	1	668	219	905	5.57e-107	346
MsaG026663	AT1G09060.3	30.884	735	393	16	1	668	219	905	5.57e-107	346
MsaG026663	AT4G21430.1	28.320	738	413	13	2	671	227	916	1.68e-83	283
MsaG026663	AT3G07610.2	50.530	283	106	3	215	470	415	690	1.13e-72	250
MsaG026663	AT3G07610.2	43.147	197	110	2	1	197	154	348	1.72e-46	176

Find 154 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTTCACCATGCAGATAATT+TGG	0.149377	5:-26396409	None:intergenic
AGTACATGCGCTCATCATTA+TGG	0.215750	5:-26396155	None:intergenic
GATCTTCATCACGATGATTT+AGG	0.227135	5:+26396799	MsaT026663.1:CDS
CTTCGTTGTGGGCAGCTTCT+AGG	0.236807	5:+26396346	MsaT026663.1:CDS
ATTCCTTAGATGGTGCTCTT+TGG	0.245043	5:+26398223	MsaT026663.1:CDS
TTCCTTAGATGGTGCTCTTT+GGG	0.262549	5:+26398224	MsaT026663.1:CDS
AATGTGCACCAATTCTTTAC+TGG	0.265399	5:+26397250	MsaT026663.1:CDS
AGTACATTGCTGACAATTAC+AGG	0.278275	5:-26396853	None:intergenic
GAACAAGAACAAGTCACTTT+TGG	0.279118	5:+26396942	MsaT026663.1:CDS
AGCATCAGGTGCTTTGTATC+TGG	0.288535	5:-26396446	None:intergenic
ATCCCAAGGATAATCATAAT+TGG	0.294597	5:+26397284	MsaT026663.1:CDS
TCACATTTAATCTCAGGTTT+TGG	0.298428	5:-26396541	None:intergenic
TACCTCCAATTTGTCCTCTA+TGG	0.305460	5:-26401177	None:intergenic
TCATATTGCTAAAGCAAAAC+TGG	0.318714	5:+26398074	MsaT026663.1:CDS
TCTATGGACCTGTGATTTAC+TGG	0.329135	5:-26401161	None:intergenic
GCTCTTGTTTGAATCCTGTT+AGG	0.338447	5:+26396689	MsaT026663.1:CDS
GGAGCTACATGGTGATATTC+AGG	0.343116	5:+26398158	MsaT026663.1:CDS
ATGCCCGATGGTTAGATAAA+AGG	0.344516	5:-26399680	None:intergenic
AGAAGCATTTCAGAGAATTC+AGG	0.344845	5:+26398292	MsaT026663.1:CDS
ATTCCTACATGGTCAAAATC+TGG	0.346904	5:+26396484	MsaT026663.1:CDS
ATCCCAAAGAGCACCATCTA+AGG	0.353655	5:-26398226	None:intergenic
CCTTCAGATTTCGGACTTGA+TGG	0.363042	5:-26399892	None:intergenic
GTTGATGGGGATTCCTTAGA+TGG	0.367964	5:+26398213	MsaT026663.1:CDS
CTTGGCTTCTATCTCCTTCT+CGG	0.376051	5:-26395815	None:intergenic
GTACATGCGCTCATCATTAT+GGG	0.392626	5:-26396154	None:intergenic
ATATCATCTCTATTCCTAAC+AGG	0.396727	5:-26396703	None:intergenic
AAGTATTGAAATTGAAAGAT+TGG	0.403818	5:+26397311	MsaT026663.1:CDS
ACTAACTCAGAGATGCATTC+TGG	0.406256	5:-26396598	None:intergenic
AGAGGACGTACCTGCATTGC+AGG	0.406514	5:+26398260	MsaT026663.1:CDS
AGGCCAATTATGATTATCCT+TGG	0.408256	5:-26397287	None:intergenic
CAGCTCTTTGCAAAGAATCC+AGG	0.410316	5:+26396746	MsaT026663.1:CDS
TCTTCCACATTTAATACGAT+TGG	0.410475	5:+26395777	MsaT026663.1:CDS
CTTCACCATGCAGATAATTT+GGG	0.410728	5:-26396408	None:intergenic
GCAACTCTTTGTACTGTCCT+AGG	0.413078	5:+26396770	MsaT026663.1:CDS
TTCAATGGCACTGGAGCAAA+GGG	0.413215	5:+26396827	MsaT026663.1:CDS
GAAAATAGTTTGTTGGTTGA+TGG	0.415576	5:+26398198	MsaT026663.1:CDS
TTGTGTACCCAGTAAAGAAT+TGG	0.417175	5:-26397258	None:intergenic
AATGTACTTGAATGTACATC+TGG	0.421952	5:+26396868	MsaT026663.1:CDS
CCGTGATCACATTTAATCTC+AGG	0.429409	5:-26396547	None:intergenic
AGGCACTTGATTGCTTAGAT+TGG	0.440544	5:+26396971	MsaT026663.1:CDS
TCAAGCTGGGCACCAGCATC+AGG	0.440923	5:-26396460	None:intergenic
TTCAGATATTCCTGCAATGC+AGG	0.441628	5:-26398270	None:intergenic
AAGAGCTTTGAGCATATACT+TGG	0.441941	5:-26395755	None:intergenic
CTTCAGATTTCGGACTTGAT+GGG	0.446013	5:-26399891	None:intergenic
TATGGATTTGCTGAGGAGCT+TGG	0.447060	5:+26397421	MsaT026663.1:CDS
AAGATAAACTCAAAATCAAA+TGG	0.449448	5:-26396379	None:intergenic
AATGTACATCTGGTTTAAGC+TGG	0.451500	5:+26396878	MsaT026663.1:CDS
GGAGCTTGGACGGGGTGATT+CGG	0.453767	5:+26397435	MsaT026663.1:CDS
GACAAAATCAAGTGCAACCT+TGG	0.456526	5:-26401084	None:intergenic
ATTTGCTGAGGAGCTTGGAC+GGG	0.458809	5:+26397426	MsaT026663.1:CDS
TCTGGCTTTAGAACTTCATC+AGG	0.461474	5:-26397373	None:intergenic
CAGGTCCATAGAGGACAAAT+TGG	0.466017	5:+26401172	MsaT026663.1:CDS
GGCCAATTATGATTATCCTT+GGG	0.468355	5:-26397286	None:intergenic
GCAAAGCTTGTTTGAAGTCA+CGG	0.474647	5:+26395575	MsaT026663.1:CDS
CATGCAGATAATTTGGGCCT+CGG	0.479508	5:-26396402	None:intergenic
GTCAAAGAAATGACAAGGGC+AGG	0.480713	5:+26395351	MsaT026663.1:CDS
ACGATTGGATCAAGAACAAA+TGG	0.480998	5:+26395792	MsaT026663.1:CDS
ACTACAGTCAATTAAAGAAA+AGG	0.482579	5:+26395696	MsaT026663.1:intron
AAAATAGTTTGTTGGTTGAT+GGG	0.484733	5:+26398199	MsaT026663.1:CDS
TGCGGAATTCCTCTGTCAAA+CGG	0.487229	5:-26401133	None:intergenic
GTTGCCGTGAGCTTCGTTGT+GGG	0.489346	5:+26396335	MsaT026663.1:CDS
TGTGATTTACTGGAAGTTTG+CGG	0.491065	5:-26401151	None:intergenic
ATGTGCACCAATTCTTTACT+GGG	0.492244	5:+26397251	MsaT026663.1:CDS
CACTGTTGAAAATAGTTTGT+TGG	0.496892	5:+26398191	MsaT026663.1:CDS
ATGGTCAAAATCTGGGTGGC+AGG	0.497130	5:+26396492	MsaT026663.1:CDS
ACCAACTTTACCTCCTCTAC+AGG	0.497149	5:-26398330	None:intergenic
GTTGTGGGCAGCTTCTAGGT+GGG	0.507656	5:+26396350	MsaT026663.1:CDS
GATTTGCTGAGGAGCTTGGA+CGG	0.507712	5:+26397425	MsaT026663.1:CDS
GGAAACCAACGATCATCATC+AGG	0.509624	5:+26395723	MsaT026663.1:CDS
TGTATGTAGGTATTGAGCCT+TGG	0.510562	5:+26399819	MsaT026663.1:intron
CGTTGTGGGCAGCTTCTAGG+TGG	0.513332	5:+26396349	MsaT026663.1:CDS
AACAGGATTCAAACAAGAGC+AGG	0.514173	5:-26396686	None:intergenic
TTTCAATGGCACTGGAGCAA+AGG	0.515097	5:+26396826	MsaT026663.1:CDS
GCTCCCTCTTGTCTTGCTCA+AGG	0.519343	5:-26398140	None:intergenic
CAACTCTTTGTACTGTCCTA+GGG	0.522501	5:+26396771	MsaT026663.1:CDS
TGTTGCCGTGAGCTTCGTTG+TGG	0.522924	5:+26396334	MsaT026663.1:CDS
AAAGATTGGCCTCCTTTCAA+AGG	0.523135	5:+26397325	MsaT026663.1:CDS
TCTTTCAATTTCAATACTTG+AGG	0.529125	5:-26397307	None:intergenic
TTCCTACATGGTCAAAATCT+GGG	0.531797	5:+26396485	MsaT026663.1:CDS
ACCATGTAGGAATCTCAAGC+TGG	0.533279	5:-26396474	None:intergenic
TTTGTCTCTCCTGAAAATGT+TGG	0.534278	5:+26401101	MsaT026663.1:CDS
TCAAGAACAAATGGCCGAGA+AGG	0.538911	5:+26395801	MsaT026663.1:CDS
TGATCCAATCGTATTAAATG+TGG	0.539950	5:-26395781	None:intergenic
GAGATAGAAGCCAAGTTACA+AGG	0.542112	5:+26395823	MsaT026663.1:CDS
AATGCACGCCACATGACAAA+CGG	0.544435	5:-26396904	None:intergenic
TTCAGATTTCGGACTTGATG+GGG	0.544450	5:-26399890	None:intergenic
GTCAATTAAAGAAAAGGAGG+AGG	0.545970	5:+26395702	MsaT026663.1:intron
TTTGCTGAGGAGCTTGGACG+GGG	0.546841	5:+26397427	MsaT026663.1:CDS
ATAATGATGAGCGCATGTAC+TGG	0.548032	5:+26396157	MsaT026663.1:CDS
AGCTCTTTGCAAAGAATCCA+GGG	0.549815	5:+26396747	MsaT026663.1:CDS
TGTCCATTGCTCTCCTGTAG+AGG	0.552261	5:+26398317	MsaT026663.1:CDS
TTAGATAAAAGGTCTGATCA+TGG	0.552811	5:-26399669	None:intergenic
AGGTTGAGAGCACCTTTGAA+AGG	0.553650	5:-26397337	None:intergenic
TCAGATGCACCAAATGCAAA+CGG	0.554343	5:+26395378	MsaT026663.1:CDS
TAAAAGGTCTGATCATGGAT+GGG	0.555220	5:-26399664	None:intergenic
ATAAAAGGTCTGATCATGGA+TGG	0.557609	5:-26399665	None:intergenic
CTCAACCTGATGATGATCGT+TGG	0.558986	5:-26395728	None:intergenic
AAGGTATCCTCGATTGAAAG+AGG	0.564928	5:+26395507	MsaT026663.1:intron
GCTGGGAGCCGTTTGTCATG+TGG	0.567136	5:+26396896	MsaT026663.1:CDS
AGCATTCTGTGCAGCTTCTG+TGG	0.567239	5:-26396291	None:intergenic
GCACCTTGAGCAAGACAAGA+GGG	0.570458	5:+26398137	MsaT026663.1:CDS
ATGTACATCTGGTTTAAGCT+GGG	0.572127	5:+26396879	MsaT026663.1:CDS
AGATACAAAGCACCTGATGC+TGG	0.574516	5:+26396448	MsaT026663.1:CDS
AGCTTCTGAACAAAAGTCCA+AGG	0.575249	5:-26399836	None:intergenic
CCTGAGATTAAATGTGATCA+CGG	0.577057	5:+26396547	MsaT026663.1:CDS
CATCAGGCAGCTTCACAGCA+AGG	0.577705	5:-26397357	None:intergenic
TGATGAAGATCTACAGCCCT+AGG	0.579045	5:-26396787	None:intergenic
CGAGGCCCAAATTATCTGCA+TGG	0.583825	5:+26396403	MsaT026663.1:CDS
AATTGTTCCTCTTTCAATCG+AGG	0.584177	5:-26395514	None:intergenic
GACGGGGTGATTCGGTGACT+AGG	0.584547	5:+26397443	MsaT026663.1:CDS
TGAGTTAGTATGTAAAGCAA+AGG	0.585122	5:+26396612	MsaT026663.1:CDS
AAATAGTTTGTTGGTTGATG+GGG	0.585934	5:+26398200	MsaT026663.1:CDS
GTCCATAGAGGACAAATTGG+AGG	0.587047	5:+26401175	MsaT026663.1:CDS
AGTAAATCACAGGTCCATAG+AGG	0.591019	5:+26401163	MsaT026663.1:CDS
CAAGACAAGAGGGAGCTACA+TGG	0.591607	5:+26398147	MsaT026663.1:CDS
GCTGCCCACAACGAAGCTCA+CGG	0.592775	5:-26396339	None:intergenic
TTGCAGTTACCACAGCAGAC+AGG	0.598583	5:-26395550	None:intergenic
GCAAACTTCCAGTAAATCAC+AGG	0.600882	5:+26401153	MsaT026663.1:CDS
TTGTGGGCAGCTTCTAGGTG+GGG	0.602777	5:+26396351	MsaT026663.1:CDS
AAAAGGTCTGATCATGGATG+GGG	0.603357	5:-26399663	None:intergenic
ACAGTCAATTAAAGAAAAGG+AGG	0.606305	5:+26395699	MsaT026663.1:intron
ACAGTACAAAGAGTTGCCCC+TGG	0.608816	5:-26396764	None:intergenic
CCCAGCTTGAGATTCCTACA+TGG	0.609328	5:+26396473	MsaT026663.1:CDS
TTGAGAGCACCTTTGAAAGG+AGG	0.613142	5:-26397334	None:intergenic
AACGAAGCTCACGGCAACAG+AGG	0.614200	5:-26396330	None:intergenic
GAGGCATGTCCTGTCTGCTG+TGG	0.617423	5:+26395541	MsaT026663.1:CDS
AGCACCTTGAGCAAGACAAG+AGG	0.618569	5:+26398136	MsaT026663.1:CDS
TATTGCTTATGGATTTGCTG+AGG	0.619448	5:+26397414	MsaT026663.1:CDS
GAAAGAGGAACAATTTGCTG+AGG	0.620045	5:+26395522	MsaT026663.1:CDS
TGAAGTTCTAAAGCCAGACA+TGG	0.620406	5:+26397378	MsaT026663.1:CDS
TCAAAGAAATGACAAGGGCA+GGG	0.621822	5:+26395352	MsaT026663.1:CDS
CCATGTAGGAATCTCAAGCT+GGG	0.624894	5:-26396473	None:intergenic
GGGTGGCAGGCTGATAGTGA+CGG	0.631761	5:+26396505	MsaT026663.1:CDS
CTACATGGTGATATTCAGGA+TGG	0.633510	5:+26398162	MsaT026663.1:CDS
AATGAAACTTCAAAATGCAG+AGG	0.634474	5:+26396648	MsaT026663.1:CDS
CCATTGCTCTCCTGTAGAGG+AGG	0.634485	5:+26398320	MsaT026663.1:CDS
CCATCAAGTCCGAAATCTGA+AGG	0.635792	5:+26399892	MsaT026663.1:CDS
TCAATGTCAAAGAAATGACA+AGG	0.646775	5:+26395346	MsaT026663.1:CDS
TCAGATTTCGGACTTGATGG+GGG	0.647731	5:-26399889	None:intergenic
CACGGCAACAGAGGAGACAA+AGG	0.649807	5:-26396321	None:intergenic
CCTCCTCTACAGGAGAGCAA+TGG	0.652097	5:-26398320	None:intergenic
TGGGTACACAAATTATCCCA+AGG	0.662170	5:+26397270	MsaT026663.1:CDS
TGAGTGCTTCCGTTTGACAG+AGG	0.665002	5:+26401124	MsaT026663.1:CDS
GAAGTTCTAAAGCCAGACAT+GGG	0.665837	5:+26397379	MsaT026663.1:CDS
TACATGCGCTCATCATTATG+GGG	0.667563	5:-26396153	None:intergenic
ATGATATACACAATAACACA+AGG	0.668038	5:+26396719	MsaT026663.1:CDS
CGTATATGCTATGATTGATG+TGG	0.680480	5:+26401631	MsaT026663.1:CDS
TGATTGCTTAGATTGGTGCG+AGG	0.693830	5:+26396978	MsaT026663.1:CDS
CAATGTCAAAGAAATGACAA+GGG	0.710751	5:+26395347	MsaT026663.1:CDS
CTACATGGTCAAAATCTGGG+TGG	0.720269	5:+26396488	MsaT026663.1:CDS
GCTCTTTGCAAAGAATCCAG+GGG	0.726479	5:+26396748	MsaT026663.1:CDS
CTGCGTCAGACATATCACAA+TGG	0.731463	5:-26397468	None:intergenic
TGATATACACAATAACACAA+GGG	0.738813	5:+26396720	MsaT026663.1:CDS
TCAATGGCACTGGAGCAAAG+GGG	0.769506	5:+26396828	MsaT026663.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	26395338	26401685	26395338	ID=MsaG026663
Chr5	mRNA	26395338	26401685	26395338	ID=MsaT026663.1;Parent=MsaG026663
Chr5	exon	26395338	26395432	26395338	ID=MsaT026663.1.exon1;Parent=MsaT026663.1
Chr5	CDS	26395338	26395432	26395338	ID=cds.MsaT026663.1;Parent=MsaT026663.1
Chr5	exon	26395510	26395609	26395510	ID=MsaT026663.1.exon2;Parent=MsaT026663.1
Chr5	CDS	26395510	26395609	26395510	ID=cds.MsaT026663.1;Parent=MsaT026663.1
Chr5	exon	26395703	26395844	26395703	ID=MsaT026663.1.exon3;Parent=MsaT026663.1
Chr5	CDS	26395703	26395844	26395703	ID=cds.MsaT026663.1;Parent=MsaT026663.1
Chr5	exon	26396115	26396178	26396115	ID=MsaT026663.1.exon4;Parent=MsaT026663.1
Chr5	CDS	26396115	26396178	26396115	ID=cds.MsaT026663.1;Parent=MsaT026663.1
Chr5	exon	26396261	26396999	26396261	ID=MsaT026663.1.exon5;Parent=MsaT026663.1
Chr5	CDS	26396261	26396999	26396261	ID=cds.MsaT026663.1;Parent=MsaT026663.1
Chr5	exon	26397241	26397489	26397241	ID=MsaT026663.1.exon6;Parent=MsaT026663.1
Chr5	CDS	26397241	26397489	26397241	ID=cds.MsaT026663.1;Parent=MsaT026663.1
Chr5	exon	26398060	26398341	26398060	ID=MsaT026663.1.exon7;Parent=MsaT026663.1
Chr5	CDS	26398060	26398341	26398060	ID=cds.MsaT026663.1;Parent=MsaT026663.1
Chr5	exon	26399655	26399727	26399655	ID=MsaT026663.1.exon8;Parent=MsaT026663.1
Chr5	CDS	26399655	26399727	26399655	ID=cds.MsaT026663.1;Parent=MsaT026663.1
Chr5	exon	26399828	26399913	26399828	ID=MsaT026663.1.exon9;Parent=MsaT026663.1
Chr5	CDS	26399828	26399913	26399828	ID=cds.MsaT026663.1;Parent=MsaT026663.1
Chr5	exon	26401077	26401196	26401077	ID=MsaT026663.1.exon10;Parent=MsaT026663.1
Chr5	CDS	26401077	26401196	26401077	ID=cds.MsaT026663.1;Parent=MsaT026663.1
Chr5	exon	26401617	26401685	26401617	ID=MsaT026663.1.exon11;Parent=MsaT026663.1
Chr5	CDS	26401617	26401685	26401617	ID=cds.MsaT026663.1;Parent=MsaT026663.1

Gene Sequence

>MsaT026663.1

ATGTGTCATCAATGTCAAAGAAATGACAAGGGCAGGGTTGTCAGATGCACCAAATGCAAACGGAAAAGATATTGTGTAGACTGTATAAAAAATTGGTATCCTCGATTGAAAGAGGAACAATTTGCTGAGGCATGTCCTGTCTGCTGTGGTAACTGCAATTGCAAAGCTTGTTTGAAGTCACGGAAACTTATCGATTCAATTAAAGAAAAGGAGGAGGAAACCAACGATCATCATCAGGTTGAGCGCTCCAAGTATATGCTCAAAGCTCTTCTTCCACATTTAATACGATTGGATCAAGAACAAATGGCCGAGAAGGAGATAGAAGCCAAGTTACAAGGTCTCTCACTCTCTGAGCTAAAAATTAAAAAATCAAATCCCCATAATGATGAGCGCATGTACTGTGACAACTGCAAAACATCAATATTTGACTACCACAGAAGCTGCACAGAATGCTCTTTTGACCTTTGTCTCCTCTGTTGCCGTGAGCTTCGTTGTGGGCAGCTTCTAGGTGGGGCAGATCCATTTGATTTTGAGTTTATCTTCCGAGGCCCAAATTATCTGCATGGTGAAGTTGCGAAGAAAGTAACCAGATACAAAGCACCTGATGCTGGTGCCCAGCTTGAGATTCCTACATGGTCAAAATCTGGGTGGCAGGCTGATAGTGACGGCAATATTCCCTGTCCAAAACCTGAGATTAAATGTGATCACGGTTACCTTGAACTGAAAAGCGTATTTTCGCCAGAATGCATCTCTGAGTTAGTATGTAAAGCAAAGGAACTTGCAGATTCAATGAAACTTCAAAATGCAGAGGTGACTCTTGATAATACCTGCTCTTGTTTGAATCCTGTTAGGAATAGAGATGATATACACAATAACACAAGGGAAGCAGCTCTTTGCAAAGAATCCAGGGGCAACTCTTTGTACTGTCCTAGGGCTGTAGATCTTCATCACGATGATTTAGGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAGCCGTTTGTCATGTGGCGTGCATTTCGTCAAATAAACAAGAACAAGAACAAGTCACTTTTGGATGTTAAGGCACTTGATTGCTTAGATTGGTGCGAGATAGATATTAATGTGCACCAATTCTTTACTGGGTACACAAATTATCCCAAGGATAATCATAATTGGCCTCAAGTATTGAAATTGAAAGATTGGCCTCCTTTCAAAGGTGCTCTCAACCTTGCTGTGAAGCTGCCTGATGAAGTTCTAAAGCCAGACATGGGACCAAAAACATATATTGCTTATGGATTTGCTGAGGAGCTTGGACGGGGTGATTCGGTGACTAGGCTCCATTGTGATATGTCTGACGCAGTAAATGTGTTGACTCATATTGCTAAAGCAAAACTGGATCGTGTTATTATTGACGCAATTAAGAAATTGAAACAAAAGCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATATTCAGGATGGAGAGACCACTGTTGAAAATAGTTTGTTGGTTGATGGGGATTCCTTAGATGGTGCTCTTTGGGATATTTTTCGGAGAGAGGACGTACCTGCATTGCAGGAATATCTGAAGAAGCATTTCAGAGAATTCAGGCATGTCCATTGCTCTCCTGTAGAGGAGGTTATTCACCCCATCCATGATCAGACCTTTTATCTAACCATCGGGCATAAGAAAAAGCTGAAGGAAGAGTATGGTATTGAGCCTTGGACTTTTGTTCAGAAGCTTGGAGATGCAGTTTTCATTTCAGCTGGTTGCCCCCATCAAGTCCGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGCTTCCGTTTGACAGAGGAATTCCGCAAACTTCCAGTAAATCACAGGTCCATAGAGGACAAATTGGAGGTGAAGAAAATGATCGTATATGCTATGATTGATGTGGTCAAAAAGTTGGAGAAAGCAAGGAGCCAATGA

Protein sequence

>MsaT026663.1

MCHQCQRNDKGRVVRCTKCKRKRYCVDCIKNWYPRLKEEQFAEACPVCCGNCNCKACLKSRKLIDSIKEKEEETNDHHQVERSKYMLKALLPHLIRLDQEQMAEKEIEAKLQGLSLSELKIKKSNPHNDERMYCDNCKTSIFDYHRSCTECSFDLCLLCCRELRCGQLLGGADPFDFEFIFRGPNYLHGEVAKKVTRYKAPDAGAQLEIPTWSKSGWQADSDGNIPCPKPEIKCDHGYLELKSVFSPECISELVCKAKELADSMKLQNAEVTLDNTCSCLNPVRNRDDIHNNTREAALCKESRGNSLYCPRAVDLHHDDLGHFQWHWSKGEPVIVSNVLECTSGLSWEPFVMWRAFRQINKNKNKSLLDVKALDCLDWCEIDINVHQFFTGYTNYPKDNHNWPQVLKLKDWPPFKGALNLAVKLPDEVLKPDMGPKTYIAYGFAEELGRGDSVTRLHCDMSDAVNVLTHIAKAKLDRVIIDAIKKLKQKHLEQDKRELHGDIQDGETTVENSLLVDGDSLDGALWDIFRREDVPALQEYLKKHFREFRHVHCSPVEEVIHPIHDQTFYLTIGHKKKLKEEYGIEPWTFVQKLGDAVFISAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPVNHRSIEDKLEVKKMIVYAMIDVVKKLEKARSQ*