AlfalfaGEDB | MsaG026698

M. sativa ssp. caerulea / MsaG026698

KEGG: -
GO: GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04690.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026698	XP_003613209.1	99.539	217	1	0	1	217	1	217	5.91e-160	451

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026698	sp\|Q9LDT3\|YAB4_ARATH	55.947	227	85	4	2	217	9	231	4.30e-72	221

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026698	tr\|G7K086\|G7K086_MEDTR	99.539	217	1	0	1	217	1	217	2.83e-160	451

TFs/TRs:

Gene ID	Type	Classification
MsaG026698	TF	C2C2-YABBY

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000164	MsaG026698	0.834809	4.403002e-56	1.466452e-53
MsaG000530	MsaG026698	0.824021	1.789466e-53	4.382968e-51
MsaG000690	MsaG026698	0.843675	2.261606e-58	9.924142e-56
MsaG000940	MsaG026698	0.811847	9.792845e-51	1.749628e-48
MsaG001910	MsaG026698	0.809635	2.931691e-50	4.962527e-48
MsaG002359	MsaG026698	0.804230	4.025921e-49	5.995651e-47
MsaG002548	MsaG026698	0.804771	3.108089e-49	4.687075e-47
MsaG004845	MsaG026698	0.808369	5.454474e-50	8.955482e-48
MsaG005460	MsaG026698	0.852679	7.559797e-61	4.497225e-58
MsaG005439	MsaG026698	0.844704	1.200723e-58	5.448660e-56
MsaG006239	MsaG026698	0.821778	5.926461e-53	1.366239e-50
MsaG006548	MsaG026698	0.808758	4.510703e-50	7.475876e-48
MsaG007434	MsaG026698	0.828302	1.735059e-54	4.785008e-52
MsaG007407	MsaG026698	0.836536	1.616162e-56	5.668934e-54
MsaG008337	MsaG026698	0.816231	1.067646e-51	2.129333e-49
MsaG008630	MsaG026698	0.809475	3.172214e-50	5.349144e-48
MsaG008991	MsaG026698	0.803964	4.568998e-49	6.762610e-47
MsaG009094	MsaG026698	0.856839	4.768185e-62	3.293765e-59
MsaG009196	MsaG026698	0.802080	1.115562e-48	1.581028e-46
MsaG009230	MsaG026698	0.804480	3.573259e-49	5.352232e-47
MsaG011226	MsaG026698	0.802017	1.149475e-48	1.626693e-46
MsaG011240	MsaG026698	0.864747	1.942044e-64	1.816328e-61
MsaG012141	MsaG026698	0.805225	2.500944e-49	3.811418e-47
MsaG012262	MsaG026698	0.809665	2.889023e-50	4.893825e-48
MsaG012450	MsaG026698	0.827959	2.096739e-54	5.727070e-52
MsaG013553	MsaG026698	0.802673	8.431931e-49	1.211356e-46
MsaG014337	MsaG026698	0.806241	1.533776e-49	2.393928e-47
MsaG016540	MsaG026698	0.819914	1.582987e-52	3.473587e-50
MsaG016835	MsaG026698	0.824737	1.216512e-53	3.038163e-51
MsaG016945	MsaG026698	0.831752	2.521711e-55	7.676932e-53
MsaG017063	MsaG026698	0.824548	1.346982e-53	3.346849e-51
MsaG017041	MsaG026698	0.806469	1.373706e-49	2.155724e-47
MsaG017887	MsaG026698	0.805593	2.095580e-49	3.221100e-47
MsaG018059	MsaG026698	0.810871	1.591481e-50	2.776087e-48
MsaG019110	MsaG026698	0.805821	1.877813e-49	2.901875e-47
MsaG019301	MsaG026698	0.809779	2.730622e-50	4.638418e-48
MsaG019325	MsaG026698	0.810353	2.057056e-50	3.543321e-48
MsaG019355	MsaG026698	0.833864	7.579453e-56	2.454085e-53
MsaG019473	MsaG026698	0.803734	5.097512e-49	7.504882e-47
MsaG019900	MsaG026698	0.820757	1.016475e-52	2.280766e-50
MsaG020483	MsaG026698	0.806398	1.421657e-49	2.227164e-47
MsaG020539	MsaG026698	0.807666	7.685279e-50	1.240673e-47
MsaG020982	MsaG026698	0.825016	1.046352e-53	2.633282e-51
MsaG021085	MsaG026698	0.824398	1.460834e-53	3.614824e-51
MsaG022426	MsaG026698	0.805643	2.045593e-49	3.148038e-47
MsaG022548	MsaG026698	0.807386	8.807132e-50	1.412284e-47
MsaG022979	MsaG026698	0.816382	9.879181e-52	1.977905e-49
MsaG023259	MsaG026698	0.805597	2.091559e-49	3.215213e-47
MsaG023575	MsaG026698	0.826952	3.645244e-54	9.680116e-52
MsaG025330	MsaG026698	0.815674	1.419342e-51	2.790952e-49
MsaG025416	MsaG026698	0.814209	2.989141e-51	5.664425e-49
MsaG025418	MsaG026698	0.823924	1.885591e-53	4.606004e-51
MsaG025475	MsaG026698	0.813214	4.937370e-51	9.125843e-49
MsaG025598	MsaG026698	0.801497	1.467765e-48	2.052754e-46
MsaG026283	MsaG026698	0.804812	3.047756e-49	4.600545e-47
MsaG026698	MsaG026897	0.829405	9.408740e-55	2.676870e-52
MsaG026698	MsaG027172	0.839429	2.937893e-57	1.126504e-54
MsaG026698	MsaG027462	0.803741	5.080477e-49	7.480927e-47
MsaG026698	MsaG027747	0.835022	3.894146e-56	1.305279e-53
MsaG026698	MsaG027868	0.829869	7.265893e-55	2.094988e-52
MsaG026698	MsaG028303	0.806991	1.066996e-49	1.695051e-47
MsaG026698	MsaG028967	0.831312	3.233705e-55	9.717319e-53
MsaG026698	MsaG029193	0.808280	5.696661e-50	9.333334e-48
MsaG026698	MsaG029199	0.819332	2.146566e-52	4.638873e-50
MsaG026698	MsaG029308	0.808248	5.788472e-50	9.476437e-48
MsaG026698	MsaG029366	0.810864	1.596677e-50	2.784721e-48
MsaG026698	MsaG029680	0.827950	2.106414e-54	5.752215e-52
MsaG026698	MsaG029734	0.801862	1.236377e-48	1.743594e-46
MsaG026698	MsaG029922	0.831791	2.466553e-55	7.517635e-53
MsaG026698	MsaG030592	0.828870	1.266346e-54	3.548562e-52
MsaG026698	MsaG030998	0.813213	4.939000e-51	9.128739e-49
MsaG026698	MsaG031819	0.802993	7.247711e-49	1.048900e-46
MsaG026698	MsaG032178	0.806165	1.590536e-49	2.478003e-47
MsaG026698	MsaG032815	0.807427	8.635483e-50	1.386107e-47
MsaG026698	MsaG033021	0.802653	8.511554e-49	1.222254e-46
MsaG026698	MsaG033451	0.803128	6.798669e-49	9.869833e-47
MsaG026698	MsaG033632	0.834174	6.344443e-56	2.073231e-53
MsaG026698	MsaG035155	0.809877	2.601701e-50	4.429774e-48
MsaG026698	MsaG035642	0.818187	3.895823e-52	8.170761e-50
MsaG026698	MsaG035804	0.810399	2.010731e-50	3.467410e-48
MsaG026698	MsaG035867	0.821898	5.561778e-53	1.286299e-50
MsaG026698	MsaG036108	0.804116	4.250956e-49	6.314046e-47
MsaG026698	MsaG036844	0.827293	3.024609e-54	8.108756e-52
MsaG026698	MsaG036980	0.802954	7.383285e-49	1.067537e-46
MsaG026698	MsaG037118	0.856170	7.481458e-62	5.043038e-59
MsaG026698	MsaG037122	0.832635	1.528828e-55	4.774757e-53
MsaG026698	MsaG037124	0.833669	8.476866e-56	2.729169e-53
MsaG026698	MsaG037226	0.844133	1.707029e-58	7.602563e-56
MsaG026698	MsaG037407	0.833796	7.882587e-56	2.547161e-53
MsaG026698	MsaG037412	0.863470	4.834975e-64	4.298757e-61
MsaG026698	MsaG037804	0.816259	1.052016e-51	2.099664e-49
MsaG026698	MsaG039395	0.823828	1.985334e-53	4.837143e-51
MsaG026698	MsaG039771	0.804510	3.522295e-49	5.279561e-47
MsaG026698	MsaG039779	0.809242	3.555863e-50	5.962116e-48
MsaG026698	MsaG039917	0.839640	2.591633e-57	1.000318e-54
MsaG026698	MsaG039930	0.807311	9.132877e-50	1.461902e-47
MsaG026698	MsaG040310	0.810362	2.048249e-50	3.528908e-48
MsaG026698	MsaG040673	0.813955	3.398719e-51	6.399745e-49
MsaG026698	MsaG041320	0.802432	9.449937e-49	1.350119e-46
MsaG026698	MsaG041599	0.808340	5.533992e-50	9.079621e-48
MsaG026698	MsaG041873	0.823731	2.091006e-53	5.081363e-51
MsaG026698	MsaG041878	0.817317	6.107299e-52	1.252529e-49
MsaG026698	MsaG043390	0.809855	2.630891e-50	4.477116e-48
MsaG026698	MsaG044119	0.824407	1.453498e-53	3.597540e-51
MsaG026698	MsaG044316	0.803909	4.692187e-49	6.935752e-47
MsaG026698	MsaG045212	0.801211	1.678624e-48	2.332426e-46
MsaG026698	MsaG045601	0.831063	3.719077e-55	1.109613e-52
MsaG026698	MsaG045922	0.866708	4.703114e-65	4.759826e-62
MsaG026698	MsaG046004	0.832569	1.587252e-55	4.947777e-53
MsaG026698	MsaG046214	0.836517	1.634361e-56	5.729462e-54
MsaG026698	MsaG046601	0.814656	2.383117e-51	4.566886e-49
MsaG026698	MsaG001943	0.816674	8.502675e-52	1.715064e-49
MsaG026698	MsaG004516	0.804352	3.797233e-49	5.671186e-47
MsaG026698	MsaG002445	0.803308	6.243071e-49	9.100873e-47
MsaG026698	MsaG006591	0.804729	3.171493e-49	4.777971e-47
MsaG026698	MsaG008053	0.847450	2.167087e-59	1.077375e-56
MsaG026698	MsaG008820	0.810409	2.000932e-50	3.451374e-48
MsaG026698	MsaG008180	0.812775	6.157100e-51	1.125590e-48
MsaG026698	MsaG014587	0.829931	7.016156e-55	2.026577e-52
MsaG026698	MsaG013062	0.821795	5.874385e-53	1.354810e-50
MsaG026698	MsaG012697	0.846754	3.355130e-59	1.629521e-56
MsaG026698	MsaG023305	0.803017	7.164702e-49	1.037465e-46
MsaG026698	MsaG020007	0.822998	3.096454e-53	7.376646e-51
MsaG026698	MsaG029639	0.815131	1.871716e-51	3.630040e-49
MsaG026698	MsaG033743	0.812091	8.668431e-51	1.557990e-48
MsaG026698	MsaG034616	0.830429	5.311691e-55	1.556169e-52
MsaG026698	MsaG032081	0.839567	2.705694e-57	1.041970e-54
MsaG026698	MsaG031429	0.848424	1.171032e-59	6.014723e-57
MsaG026698	MsaG033287	0.833839	7.689702e-56	2.487927e-53
MsaG026698	MsaG030569	0.804054	4.378763e-49	6.494698e-47
MsaG026698	MsaG043655	0.806386	1.429632e-49	2.239053e-47
MsaG026698	MsaG046894	0.836859	1.338226e-56	4.739954e-54

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026698	MtrunA17_Chr5g0413381	99.482	193	1	0	1	193	1	193	2.46e-144	400
MsaG026698	MtrunA17_Chr4g0063931	49.686	159	58	4	12	162	14	158	9.90e-45	147
MsaG026698	MtrunA17_Chr2g0322221	51.250	160	62	4	12	162	12	164	5.24e-44	145
MsaG026698	MtrunA17_Chr4g0025361	48.701	154	66	3	12	162	9	152	9.54e-41	137
MsaG026698	MtrunA17_Chr4g0011841	50.000	156	70	2	14	162	25	179	5.43e-40	136
MsaG026698	MtrunA17_Chr4g0056521	51.553	161	64	5	12	162	18	174	1.75e-39	135
MsaG026698	MtrunA17_Chr5g0419871	37.662	154	69	2	12	157	17	151	2.02e-27	102

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026698	AT1G23420.1	55.947	227	85	4	2	217	9	231	4.37e-73	221
MsaG026698	AT1G23420.2	55.947	227	85	4	2	217	40	262	5.81e-73	222
MsaG026698	AT2G26580.2	50.327	153	60	3	12	162	9	147	2.76e-46	151
MsaG026698	AT2G26580.1	50.327	153	60	3	12	162	9	147	2.76e-46	151
MsaG026698	AT2G45190.1	46.061	165	79	1	8	162	19	183	1.05e-42	144
MsaG026698	AT1G08465.1	49.677	155	66	4	12	162	8	154	7.65e-41	137
MsaG026698	AT4G00180.1	45.810	179	71	5	8	162	19	195	8.36e-39	134
MsaG026698	AT4G00180.2	43.976	166	67	5	21	162	1	164	6.60e-30	110
MsaG026698	AT1G69180.1	40.385	156	73	4	12	163	19	158	5.99e-29	107
MsaG026698	AT2G45190.2	63.636	66	24	0	97	162	54	119	4.09e-25	97.1

Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGCAGAGAAGAGATTAAA+AGG	0.220244	5:+26964758	MsaT026698.1:intron
CATCACCTTTGCACTGAGTT+GGG	0.247070	5:-26965023	None:intergenic
GCTTCCTTGTGAGCCATATC+AGG	0.254990	5:-26964796	None:intergenic
ACTCATGGTTACCATTAAAA+TGG	0.296363	5:-26964023	None:intergenic
CTTTCCAAGATGGAATTTCT+TGG	0.337983	5:-26965718	None:intergenic
GTCTTGTTTGCATCTTCATC+TGG	0.344790	5:-26964420	None:intergenic
GATGAGTAAGAGATGCTAAA+AGG	0.346967	5:-26964257	None:intergenic
GGTGTTCTTTGTCTCTTCTC+TGG	0.372695	5:-26964628	None:intergenic
TGTACATAGCAAATCTGTTC+TGG	0.376697	5:-26963983	None:intergenic
TCATCACCTTTGCACTGAGT+TGG	0.384038	5:-26965024	None:intergenic
TATTCATTCATTCACTCAAA+TGG	0.405002	5:-26965745	None:intergenic
TTATTGACTACATTGCTGAT+TGG	0.408933	5:-26964507	None:intergenic
CAGCTTCATGAGGGTCCACT+TGG	0.437038	5:-26965089	None:intergenic
ATCACCTTTGCACTGAGTTG+GGG	0.440172	5:-26965022	None:intergenic
GATCCACAAATTGATCTGTC+TGG	0.455209	5:-26965059	None:intergenic
ACAAGGATTCCGTGGAAGAA+AGG	0.512794	5:+26965693	MsaT026698.1:CDS
AGCATCTCTTACTCATCTTG+AGG	0.521370	5:+26964263	MsaT026698.1:CDS
GGTACCAAGAAATTCCATCT+TGG	0.522438	5:+26965714	MsaT026698.1:CDS
AGCTTCATGAGGGTCCACTT+GGG	0.522893	5:-26965088	None:intergenic
ACAATCAGAATAAGTCATCA+TGG	0.529221	5:-26964466	None:intergenic
AAATGGTGTCCTTTCCAAGA+TGG	0.529231	5:-26965728	None:intergenic
TAGCCAGACAGATCAATTTG+TGG	0.529249	5:+26965056	MsaT026698.1:CDS
AGAAGAGATTAAAAGGCTAA+AGG	0.529887	5:+26964765	MsaT026698.1:CDS
ATATTAATTACTTGATGAAG+CGG	0.533614	5:-26964663	None:intergenic
TTCTTGGTACCTTTCTTCCA+CGG	0.541076	5:-26965702	None:intergenic
CTTCCTTGTGAGCCATATCA+GGG	0.545406	5:-26964795	None:intergenic
GAGATGCTAAAAGGTGGAAA+GGG	0.553103	5:-26964248	None:intergenic
AGAGATGCTAAAAGGTGGAA+AGG	0.557063	5:-26964249	None:intergenic
GAGTAAGAGATGCTAAAAGG+TGG	0.562368	5:-26964254	None:intergenic
ACCATTGTCAAACTGCTGCA+TGG	0.563063	5:-26964159	None:intergenic
CAGGTGAATGAAGAAGAACA+AGG	0.564909	5:+26965676	MsaT026698.1:intron
GAAGAAGAACAAGGATTCCG+TGG	0.572480	5:+26965685	MsaT026698.1:CDS
AAACCCTGATATGGCTCACA+AGG	0.577441	5:+26964792	MsaT026698.1:CDS
CAAGAAATTCCATCTTGGAA+AGG	0.597804	5:+26965719	MsaT026698.1:CDS
TCACCTTTGCACTGAGTTGG+GGG	0.601505	5:-26965021	None:intergenic
GATGACTTATTCTGATTGTG+AGG	0.620697	5:+26964470	MsaT026698.1:CDS
CAGATTTGCTATGTACAATG+TGG	0.632418	5:+26963989	MsaT026698.1:CDS
AGTGGACCCTCATGAAGCTG+AGG	0.650640	5:+26965092	MsaT026698.1:CDS
TCCATGCAGCAGTTTGACAA+TGG	0.655787	5:+26964158	MsaT026698.1:CDS
ATGAAGCGGTTATAAGCTGA+TGG	0.663979	5:-26964649	None:intergenic
TGTGGATCTTGACTCCCAAG+TGG	0.667148	5:+26965074	MsaT026698.1:CDS
ATGCAGCAGTTTGACAATGG+TGG	0.669140	5:+26964161	MsaT026698.1:CDS
ATGGTGGTGACAGTAAGATG+TGG	0.764759	5:+26964177	MsaT026698.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	26963953	26965756	26963953	ID=MsaG026698
Chr5	mRNA	26963953	26965756	26963953	ID=MsaT026698.1;Parent=MsaG026698
Chr5	exon	26963953	26964033	26963953	ID=MsaT026698.1.exon1;Parent=MsaT026698.1
Chr5	CDS	26963953	26964033	26963953	ID=cds.MsaT026698.1;Parent=MsaT026698.1
Chr5	exon	26964150	26964284	26964150	ID=MsaT026698.1.exon2;Parent=MsaT026698.1
Chr5	CDS	26964150	26964284	26964150	ID=cds.MsaT026698.1;Parent=MsaT026698.1
Chr5	exon	26964402	26964531	26964402	ID=MsaT026698.1.exon3;Parent=MsaT026698.1
Chr5	CDS	26964402	26964531	26964402	ID=cds.MsaT026698.1;Parent=MsaT026698.1
Chr5	exon	26964626	26964674	26964626	ID=MsaT026698.1.exon4;Parent=MsaT026698.1
Chr5	CDS	26964626	26964674	26964626	ID=cds.MsaT026698.1;Parent=MsaT026698.1
Chr5	exon	26964765	26964840	26964765	ID=MsaT026698.1.exon5;Parent=MsaT026698.1
Chr5	CDS	26964765	26964840	26964765	ID=cds.MsaT026698.1;Parent=MsaT026698.1
Chr5	exon	26965009	26965113	26965009	ID=MsaT026698.1.exon6;Parent=MsaT026698.1
Chr5	CDS	26965009	26965113	26965009	ID=cds.MsaT026698.1;Parent=MsaT026698.1
Chr5	exon	26965679	26965756	26965679	ID=MsaT026698.1.exon7;Parent=MsaT026698.1
Chr5	CDS	26965679	26965756	26965679	ID=cds.MsaT026698.1;Parent=MsaT026698.1

Gene Sequence

>MsaT026698.1

ATGTCAACACTAAACCATCTTTTTGATCTTCCAGAACAGATTTGCTATGTACAATGTGGATTCTGCAATACCATTTTAATGGTAAGTGTTCCATGCAGCAGTTTGACAATGGTGGTGACAGTAAGATGTGGTCACTGCACAAGTCTCTTATCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTACTCATCTTGAGCAAAAAGAAAGTAGTAGTCCAGATGAAGATGCAAACAAGACTTTGAACAGTAATACTAGTGCATCCATGATGACTTATTCTGATTGTGAGGAAGATGATGTAATTCCAATCAGCAATGTAGTCAATAAACCACCAGAGAAGAGACAAAGAACACCATCAGCTTATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTAAAAACCCTGATATGGCTCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCTAATTGTCCCCCAACTCAGTGCAAAGGTGATGAAGAGAGCTGTAGCCAGACAGATCAATTTGTGGATCTTGACTCCCAAGTGGACCCTCATGAAGCTGAGGTGAATGAAGAAGAACAAGGATTCCGTGGAAGAAAGGTACCAAGAAATTCCATCTTGGAAAGGACACCATTTGAGTGA

Protein sequence

>MsaT026698.1

MSTLNHLFDLPEQICYVQCGFCNTILMVSVPCSSLTMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLEQKESSSPDEDANKTLNSNTSASMMTYSDCEEDDVIPISNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAKNPDMAHKEAFSTAAKNWANCPPTQCKGDEESCSQTDQFVDLDSQVDPHEAEVNEEEQGFRGRKVPRNSILERTPFE*