AlfalfaGEDB | MsaG026730

M. sativa ssp. caerulea / MsaG026730

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:1901363
PFAM: PF04770.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026730	XP_003615230.1	84.387	269	12	3	14	253	1	268	5.45e-132	384

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026730	sp\|Q9SB61\|ZHD2_ARATH	45.122	246	94	6	20	253	4	220	1.04e-53	176

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026730	tr\|G7KBF3\|G7KBF3_MEDTR	84.387	269	12	3	14	253	1	268	2.60e-132	384

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TFs/TRs:

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Gene ID	Type	Classification
MsaG026730	TF	zf-HD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG007404	MsaG026730	0.959347	8.616428e-117	4.261515e-111
MsaG007405	MsaG026730	0.914430	4.791702e-84	6.088199e-80
MsaG007406	MsaG026730	0.945259	1.309427e-103	1.974803e-98
MsaG010191	MsaG026730	0.874261	1.600700e-67	2.228637e-64
MsaG012005	MsaG026730	0.896049	1.208880e-75	4.932152e-72
MsaG012006	MsaG026730	0.887051	4.348654e-72	1.102208e-68
MsaG023394	MsaG026730	0.956023	2.666973e-113	9.935872e-108
MsaG023596	MsaG026730	0.941103	2.203218e-100	2.273731e-95
MsaG023597	MsaG026730	0.920217	4.332365e-87	8.300792e-83
MsaG023600	MsaG026730	0.949662	2.586089e-107	5.696060e-102

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026730	MtrunA17_Chr5g0427051	84.387	269	12	3	14	253	1	268	5.02e-136	384
MsaG026730	MtrunA17_Chr3g0133181	56.148	244	73	4	33	249	34	270	2.83e-76	232
MsaG026730	MtrunA17_Chr5g0412501	46.226	212	69	6	71	253	77	272	2.59e-42	145
MsaG026730	MtrunA17_Chr1g0188441	39.474	190	100	4	69	252	6	186	5.34e-37	129
MsaG026730	MtrunA17_Chr4g0076821	36.441	236	95	6	71	252	112	346	5.08e-35	128
MsaG026730	MtrunA17_Chr7g0217231	35.814	215	90	4	69	252	85	282	8.57e-33	122
MsaG026730	MtrunA17_Chr2g0315941	36.000	200	109	3	72	252	68	267	2.01e-31	117
MsaG026730	MtrunA17_Chr5g0404271	34.722	216	95	6	68	252	95	295	1.25e-30	115
MsaG026730	MtrunA17_Chr8g0367691	35.323	201	110	4	71	252	68	267	1.12e-28	109
MsaG026730	MtrunA17_Chr6g0479901	33.708	178	81	4	72	248	19	160	1.69e-21	88.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG026730	AT4G24660.1	45.122	246	94	6	20	253	4	220	1.06e-54	176
MsaG026730	AT4G24660.2	44.215	242	94	6	20	249	4	216	1.61e-51	168
MsaG026730	AT2G02540.2	37.398	246	126	7	31	252	43	284	2.90e-46	157
MsaG026730	AT2G02540.1	37.398	246	126	7	31	252	43	284	2.90e-46	157
MsaG026730	AT5G65410.1	43.299	194	102	3	63	253	66	254	1.25e-40	141
MsaG026730	AT1G14440.1	38.265	196	105	4	70	252	88	280	3.91e-38	135
MsaG026730	AT1G14440.2	38.265	196	105	4	70	252	88	280	3.91e-38	135
MsaG026730	AT2G18350.1	39.247	186	103	3	71	252	81	260	8.12e-36	128
MsaG026730	AT3G50890.1	39.791	191	98	5	71	251	59	242	1.54e-33	122
MsaG026730	AT5G15210.1	36.548	197	96	4	67	246	51	235	5.53e-28	108

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Find 73 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCACCGTCGGAGTTGA+CGG	0.443498	5:+27560789	MsaT026730.1:CDS
AACCCTAGCAGTAGCGGTGG+AGG	0.514729	5:+27561226	MsaT026730.1:CDS
AACGGTCTGTGATGTGCCAC+CGG	0.497928	5:-27561145	None:intergenic
AAGAATCACGCCGTTAGCTT+CGG	0.428386	5:+27560870	MsaT026730.1:CDS
AAGGCGAGAATTGATTGCTG+TGG	0.722344	5:-27561063	None:intergenic
AATAGAATTTGATGAACAAG+AGG	0.563290	5:+27560680	MsaT026730.1:CDS
AATCACGCCGTTAGCTTCGG+TGG	0.536570	5:+27560873	MsaT026730.1:CDS
ACAGAGCAGCGCGAGATGCT+AGG	0.535949	5:+27560250	MsaT026730.1:CDS
AGAATTGATTGCTGTGGTGA+TGG	0.582941	5:-27561057	None:intergenic
AGAGAAATGTTCTTAAAGTT+TGG	0.256503	5:+27561413	MsaT026730.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	27560240	27561474	27560240	ID=MsaG026730
Chr5	mRNA	27560240	27561474	27560240	ID=MsaT026730.1;Parent=MsaG026730
Chr5	exon	27560240	27560274	27560240	ID=MsaT026730.1.exon1;Parent=MsaT026730.1
Chr5	CDS	27560240	27560274	27560240	ID=cds.MsaT026730.1;Parent=MsaT026730.1
Chr5	exon	27560677	27560962	27560677	ID=MsaT026730.1.exon2;Parent=MsaT026730.1
Chr5	CDS	27560677	27560962	27560677	ID=cds.MsaT026730.1;Parent=MsaT026730.1
Chr5	exon	27561034	27561474	27561034	ID=MsaT026730.1.exon3;Parent=MsaT026730.1
Chr5	CDS	27561034	27561474	27561034	ID=cds.MsaT026730.1;Parent=MsaT026730.1

Gene Sequence

>MsaT026730.1

ATGAAGACAGACAGAGCAGCGCGAGATGCTAGGAGTGAAATAGAATTTGATGAACAAGAGGAACAAGAAGAGGAGATGGAGATTCCAGAAACACAAACACCAGTGCCAACGAGTTATGACTCACTTGGTAACTCAGCTTCACGTTCAAAACTCACCGTCGGAGTTGACGGAAGGAAAGGTAACGGCAACGGCGGTTTTGTTTCGACGGTGAGGTACCGAGAATGTCAGAAGAATCACGCCGTTAGCTTCGGTGGCCATGCTGTTGACGGTTGTTGCGAGTTTATCGCTGCCGGTGAAGAAGGAACACTTGAAGCTGTGCTTCCATCACCTCCACCGCCGCAATACCATCACCACAGCAATCAATTCTCGCCTTACTACCACCGTGCTCCTCCTTCCACAGCCGGTTACCTTCACCACCATCATCTTGCAACTCCGGTGGCACATCACAGACCGTTGGCTCTCCCTGCTGCTGCTTCCGGTGGTGGAATGAGCAGAGAAGATGATGATATGTCAAACCCTAGCAGTAGCGGTGGAGGAGGTGGTGGTGGTAGTGGTGGTGGTGGATCAAGGAAGAGATTCAGAACAAAATTCACTCAGGAACAGAAAGAGAAGTTGCTGGCTTTTGCTGAAGAACATGGTTGGAGAATTCAGAAACAAGATGAAGCTGCTATAGAACAGTTTTGTGCTGAGAATTGTATCAAGAGAAATGTTCTTAAAGTTTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA

Protein sequence

>MsaT026730.1

MKTDRAARDARSEIEFDEQEEQEEEMEIPETQTPVPTSYDSLGNSASRSKLTVGVDGRKGNGNGGFVSTVRYRECQKNHAVSFGGHAVDGCCEFIAAGEEGTLEAVLPSPPPPQYHHHSNQFSPYYHRAPPSTAGYLHHHHLATPVAHHRPLALPAAASGGGMSREDDDMSNPSSSGGGGGGGSGGGGSRKRFRTKFTQEQKEKLLAFAEEHGWRIQKQDEAAIEQFCAENCIKRNVLKVWMHNNKNTLGKKP*